RNA–Protein interactions for RNA: ENST00000552465.1

CACNB3-222, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 3

Gene CACNB3, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-222ENST00000552465 NSD2O96028 1365 aa23.91■■□□□ 1.42
CACNB3-222ENST00000552465 QSER1Q2KHR3 1735 aa23.91■■□□□ 1.42
CACNB3-222ENST00000552465 GIGYF1O75420 1035 aaPredicted RBP23.91■■□□□ 1.42
CACNB3-222ENST00000552465 COG3Q96JB2 828 aa23.91■■□□□ 1.42
CACNB3-222ENST00000552465 COL24A1Q17RW2 1714 aa23.9■■□□□ 1.42
CACNB3-222ENST00000552465 FBLN1P23142 703 aa23.9■■□□□ 1.42
CACNB3-222ENST00000552465 AMPHP49418 695 aa23.9■■□□□ 1.42
CACNB3-222ENST00000552465 CCNL1Q9UK58 526 aaPredicted RBP23.9■■□□□ 1.42
CACNB3-222ENST00000552465 COL23A1Q86Y22 540 aaPredicted RBP23.87■■□□□ 1.41
CACNB3-222ENST00000552465 FAM208AQ9UK61 1670 aaKnown RBP23.86■■□□□ 1.41
CACNB3-222ENST00000552465 MSH5O43196 834 aa23.86■■□□□ 1.41
CACNB3-222ENST00000552465 GRIN3BO60391 1043 aa23.86■■□□□ 1.41
CACNB3-222ENST00000552465 YBX3P16989 372 aaKnown RBP eCLIP23.86■■□□□ 1.41
CACNB3-222ENST00000552465 MEGF6O75095 1541 aa23.84■■□□□ 1.41
CACNB3-222ENST00000552465 USP47Q96K76 1375 aa23.84■■□□□ 1.41
CACNB3-222ENST00000552465 NBPF6Q5VWK0 638 aa23.84■■□□□ 1.41
CACNB3-222ENST00000552465 NBPF4Q96M43 638 aa23.84■■□□□ 1.41
CACNB3-222ENST00000552465 TESK2Q96S53 571 aa23.84■■□□□ 1.41
CACNB3-222ENST00000552465 LY75O60449 1722 aa23.83■■□□□ 1.41
CACNB3-222ENST00000552465 TUBGCP6Q96RT7 1819 aa23.82■■□□□ 1.4
CACNB3-222ENST00000552465 DOT1LQ8TEK3 1739 aa23.82■■□□□ 1.4
CACNB3-222ENST00000552465 CGNL1Q0VF96 1302 aa23.82■■□□□ 1.4
CACNB3-222ENST00000552465 ST20-MTHFSA0A0A6YYL1 179 aa23.8■■□□□ 1.4
CACNB3-222ENST00000552465 RRS1Q15050 365 aaKnown RBP23.8■■□□□ 1.4
CACNB3-222ENST00000552465 MSL1Q68DK7 614 aa23.8■■□□□ 1.4
CACNB3-222ENST00000552465 RTL1A6NKG5 1358 aa23.79■■□□□ 1.4
CACNB3-222ENST00000552465 SHANK3Q9BYB0 1731 aa23.79■■□□□ 1.4
CACNB3-222ENST00000552465 USHBP1Q8N6Y0 703 aa23.79■■□□□ 1.4
CACNB3-222ENST00000552465 RAPGEF4Q8WZA2 1011 aa23.79■■□□□ 1.4
CACNB3-222ENST00000552465 SLC24A1O60721 1099 aa23.78■■□□□ 1.4
CACNB3-222ENST00000552465 TONSLQ96HA7 1378 aa23.78■■□□□ 1.4
CACNB3-222ENST00000552465 FYB1O15117 783 aa23.77■■□□□ 1.4
CACNB3-222ENST00000552465 CD2APQ9Y5K6 639 aa23.77■■□□□ 1.4
CACNB3-222ENST00000552465 TATP17735 454 aaPredicted RBP23.76■■□□□ 1.39
CACNB3-222ENST00000552465 HMGB2P26583 209 aaKnown RBP23.76■■□□□ 1.39
CACNB3-222ENST00000552465 FLAD1Q8NFF5 587 aa23.76■■□□□ 1.39
CACNB3-222ENST00000552465 RGPD2P0DJD1 1756 aa23.75■■□□□ 1.39
CACNB3-222ENST00000552465 GGNBP2Q9H3C7 697 aa23.75■■□□□ 1.39
CACNB3-222ENST00000552465 SMG6Q86US8 1419 aaKnown RBP23.73■■□□□ 1.39
CACNB3-222ENST00000552465 HSP90AB2PQ58FF8 381 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 IFFO2Q5TF58 517 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 MPRIPQ6WCQ1 1025 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 PCDH11XQ9BZA7 1347 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 PCDH11YQ9BZA8 1340 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 PALLDQ8WX93 1383 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 ATP10DQ9P241 1426 aa23.72■■□□□ 1.39
CACNB3-222ENST00000552465 INSRP06213 1382 aa23.7■■□□□ 1.38
CACNB3-222ENST00000552465 CYP27B1O15528 508 aa23.69■■□□□ 1.38
CACNB3-222ENST00000552465 SMARCC1Q92922 1105 aaPredicted RBP23.68■■□□□ 1.38
CACNB3-222ENST00000552465 GPBP1L1Q9HC44 474 aaPredicted RBP23.68■■□□□ 1.38
CACNB3-222ENST00000552465 C5P01031 1676 aa23.67■■□□□ 1.38
CACNB3-222ENST00000552465 AMIGO3Q86WK7 504 aa23.66■■□□□ 1.38
CACNB3-222ENST00000552465 AK7Q96M32 723 aa23.66■■□□□ 1.38
CACNB3-222ENST00000552465 FLT4P35916 1363 aa23.65■■□□□ 1.38
CACNB3-222ENST00000552465 TMF1P82094 1093 aa23.65■■□□□ 1.38
CACNB3-222ENST00000552465 KIF24Q5T7B8 1368 aa23.65■■□□□ 1.38
CACNB3-222ENST00000552465 PIGBQ92521 554 aa23.64■■□□□ 1.37
CACNB3-222ENST00000552465 ADCY9O60503 1353 aa23.64■■□□□ 1.37
CACNB3-222ENST00000552465 SMIM5Q71RC9 77 aa23.63■■□□□ 1.37
CACNB3-222ENST00000552465 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.62■■□□□ 1.37
CACNB3-222ENST00000552465 PHF14O94880 888 aa23.62■■□□□ 1.37
CACNB3-222ENST00000552465 NKX1-1Q15270 411 aaPredicted RBP23.62■■□□□ 1.37
CACNB3-222ENST00000552465 GOLGB1Q14789 3259 aaKnown RBP23.62■■□□□ 1.37
CACNB3-222ENST00000552465 IGSF1Q8N6C5 1336 aa23.61■■□□□ 1.37
CACNB3-222ENST00000552465 ZNF526Q8TF50 670 aaPredicted RBP23.61■■□□□ 1.37
CACNB3-222ENST00000552465 C4BP0C0L5 1744 aa23.6■■□□□ 1.37
CACNB3-222ENST00000552465 TAF1LQ8IZX4 1826 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 HSPA6P17066 643 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 SSFA2P28290 1259 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 WWC3Q9ULE0 1092 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 EMILIN1Q9Y6C2 1016 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 NSD3Q9BZ95 1437 aa23.59■■□□□ 1.37
CACNB3-222ENST00000552465 LOC102724428A0A0B4J2F2 783 aa23.58■■□□□ 1.37
CACNB3-222ENST00000552465 SIK1P57059 783 aa23.58■■□□□ 1.37
CACNB3-222ENST00000552465 LINC00116Q8NCU8 138 aa23.58■■□□□ 1.37
CACNB3-222ENST00000552465 SPG7Q9UQ90 795 aa23.58■■□□□ 1.37
CACNB3-222ENST00000552465 CARD14Q9BXL6 1004 aa23.57■■□□□ 1.36
CACNB3-222ENST00000552465 CDCA8Q53HL2 280 aa23.56■■□□□ 1.36
CACNB3-222ENST00000552465 TOGARAM1Q9Y4F4 1720 aa23.56■■□□□ 1.36
CACNB3-222ENST00000552465 NCAPD2Q15021 1401 aa23.55■■□□□ 1.36
CACNB3-222ENST00000552465 PPM1GO15355 546 aaPredicted RBP23.54■■□□□ 1.36
CACNB3-222ENST00000552465 TMOD3Q9NYL9 352 aa23.54■■□□□ 1.36
CACNB3-222ENST00000552465 GNPATO15228 680 aa23.53■■□□□ 1.36
CACNB3-222ENST00000552465 ITPK1Q13572 414 aa23.53■■□□□ 1.36
CACNB3-222ENST00000552465 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.53■■□□□ 1.36
CACNB3-222ENST00000552465 ASAP1Q9ULH1 1129 aa23.53■■□□□ 1.36
CACNB3-222ENST00000552465 ITGB4P16144 1822 aa23.53■■□□□ 1.36
CACNB3-222ENST00000552465 UBR3Q6ZT12 1888 aa23.52■■□□□ 1.36
CACNB3-222ENST00000552465 ATP6V1AP38606 617 aa23.52■■□□□ 1.36
CACNB3-222ENST00000552465 PKD1L3Q7Z443 1732 aa23.52■■□□□ 1.36
CACNB3-222ENST00000552465 WASHC2AQ641Q2 1341 aa23.52■■□□□ 1.36
CACNB3-222ENST00000552465 KIF3CO14782 793 aa23.51■■□□□ 1.35
CACNB3-222ENST00000552465 EYA1Q99502 592 aa23.51■■□□□ 1.35
CACNB3-222ENST00000552465 KIF20BQ96Q89 1820 aa23.49■■□□□ 1.35
CACNB3-222ENST00000552465 MMP10P09238 476 aa23.49■■□□□ 1.35
CACNB3-222ENST00000552465 PHKG2P15735 406 aa23.49■■□□□ 1.35
CACNB3-222ENST00000552465 IFNL2Q8IZJ0 200 aa23.49■■□□□ 1.35
CACNB3-222ENST00000552465 ATG3Q9NT62 314 aa23.49■■□□□ 1.35
CACNB3-222ENST00000552465 MAP2P11137 1827 aaKnown RBP23.49■■□□□ 1.35
CACNB3-222ENST00000552465 CEP350Q5VT06 3117 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms