RNA–Protein interactions for RNA: ENST00000550379.1

RNF41-208, Transcript of ring finger protein 41, human

TSL 3

Gene RNF41, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF41-208	ENST00000550379	RAPGEF4	Q8WZA2	1011 aa		10.12	□□□□□ -0.79
RNF41-208	ENST00000550379	NLRP2	Q9NX02	1062 aa		10.12	□□□□□ -0.79
RNF41-208	ENST00000550379	TRIM35	Q9UPQ4	493 aa		10.12	□□□□□ -0.79
RNF41-208	ENST00000550379	ATRN	O75882	1429 aa		10.12	□□□□□ -0.79
RNF41-208	ENST00000550379	DLG5	Q8TDM6	1919 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	ADAMTS2	O95450	1211 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	TAT	P17735	454 aa	Predicted RBP	10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	AKAP4	Q5JQC9	854 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	TOM1L2	Q6ZVM7	507 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	NGLY1	Q96IV0	654 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	SPG7	Q9UQ90	795 aa		10.11	□□□□□ -0.79
RNF41-208	ENST00000550379	WNK3	Q9BYP7	1800 aa		10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	HSP90AB1	P08238	724 aa	Known RBP	10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	ZNF853	P0CG23	659 aa		10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	CSB-PGBD3	P0DP91	1061 aa		10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	MTHFSD	Q2M296	383 aa	Known RBP	10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	TRPC5	Q9UL62	973 aa	Predicted RBP	10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	MEGF6	O75095	1541 aa		10.1	□□□□□ -0.79
RNF41-208	ENST00000550379	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	GNAT3	A8MTJ3	354 aa		10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	NUTM2E	B1AL46	878 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	RIPK4	P57078	832 aa		10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	ZNF772	Q68DY9	489 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	LTV1	Q96GA3	475 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	USP21	Q9UK80	565 aa		10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	MAP3K5	Q99683	1374 aa		10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	THSD7A	Q9UPZ6	1657 aa		10.09	□□□□□ -0.79
RNF41-208	ENST00000550379	SOS1	Q07889	1333 aa	Predicted RBP	10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	PCDH11X	Q9BZA7	1347 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	PCDH11Y	Q9BZA8	1340 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	LRRC37A3	O60309	1634 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379		E9PSI1	815 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	CT47B1	P0C2W7	299 aa	Predicted RBP	10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	GOLGA2	Q08379	1002 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	CCDC146	Q8IYE0	955 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	IFNL2	Q8IZJ0	200 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	ZCRB1	Q8TBF4	217 aa	Known RBP	10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	DCAF5	Q96JK2	942 aa		10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	GJD4	Q96KN9	370 aa	Predicted RBP	10.08	□□□□□ -0.8
RNF41-208	ENST00000550379	AFF2	P51816	1311 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	TNS2	Q63HR2	1409 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	MRC1	P22897	1456 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	PHKG2	P15735	406 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	SLFN5	Q08AF3	891 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	ZNF428	Q96B54	188 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	CFAP44	Q96MT7	982 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	C8orf37	Q96NL8	207 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	IFT57	Q9NWB7	429 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	SHANK3	Q9BYB0	1731 aa		10.07	□□□□□ -0.8
RNF41-208	ENST00000550379	SCN11A	Q9UI33	1791 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	ZBTB7C	A1YPR0	619 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	ERVV-2	B6SEH9	535 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	CHL1	O00533	1208 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	CYP27B1	O15528	508 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	IL17RE	Q8NFR9	667 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	STRN4	Q9NRL3	753 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	KAT6B	Q8WYB5	2073 aa		10.06	□□□□□ -0.8
RNF41-208	ENST00000550379	GLI3	P10071	1580 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	EXOC5	O00471	708 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	GNAI1	P63096	354 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	C1orf141	Q5JVX7	400 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	DUSP27	Q5VZP5	1158 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	USHBP1	Q8N6Y0	703 aa		10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	RTF1	Q92541	710 aa	Known RBP	10.05	□□□□□ -0.8
RNF41-208	ENST00000550379	SIPA1L3	O60292	1781 aa	Predicted RBP	10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	RNMT	O43148	476 aa	Known RBP	10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	MEX3C	Q5U5Q3	659 aa	Known RBP	10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	MYH16	Q9H6N6	1097 aa		10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	VIRMA	Q69YN4	1812 aa	Known RBP	10.04	□□□□□ -0.8
RNF41-208	ENST00000550379	HEG1	Q9ULI3	1381 aa		10.03	□□□□□ -0.8
RNF41-208	ENST00000550379	RBM6	P78332	1123 aa	Known RBP	10.03	□□□□□ -0.8
RNF41-208	ENST00000550379	TAF7	Q15545	349 aa	Predicted RBP	10.03	□□□□□ -0.8
RNF41-208	ENST00000550379	CHMP4A	Q9BY43	222 aa		10.03	□□□□□ -0.8
RNF41-208	ENST00000550379	QTRT2	Q9H974	415 aa	Known RBP	10.03	□□□□□ -0.8
RNF41-208	ENST00000550379	KDM6A	O15550	1401 aa	Predicted RBP	10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	PLEKHG5	O94827	1062 aa		10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	CENPB	P07199	599 aa	Predicted RBP	10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	HOXB7	P09629	217 aa		10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	BRPF1	P55201	1214 aa	Predicted RBP	10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	DDB1	Q16531	1140 aa		10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	CACNA1F	O60840	1977 aa		10.02	□□□□□ -0.81
RNF41-208	ENST00000550379	SLC52A2	Q9HAB3	445 aa		10.01	□□□□□ -0.81
RNF41-208	ENST00000550379	RRP7A	Q9Y3A4	280 aa	Known RBP	10.01	□□□□□ -0.81
RNF41-208	ENST00000550379	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10	□□□□□ -0.81
RNF41-208	ENST00000550379	RGS17	Q9UGC6	210 aa	Predicted RBP	10	□□□□□ -0.81
RNF41-208	ENST00000550379	RNF123	Q5XPI4	1314 aa		10	□□□□□ -0.81
RNF41-208	ENST00000550379	KDM3B	Q7LBC6	1761 aa		9.99	□□□□□ -0.81
RNF41-208	ENST00000550379	NEUROD2	Q15784	382 aa		9.99	□□□□□ -0.81
RNF41-208	ENST00000550379	CDCA7L	Q96GN5	454 aa		9.99	□□□□□ -0.81
RNF41-208	ENST00000550379	LGR6	Q9HBX8	967 aa		9.99	□□□□□ -0.81
RNF41-208	ENST00000550379	ZNF831	Q5JPB2	1677 aa		9.99	□□□□□ -0.81
RNF41-208	ENST00000550379	CIC	Q96RK0	1608 aa	Predicted RBP	9.98	□□□□□ -0.81
RNF41-208	ENST00000550379	HMGB2	P26583	209 aa	Known RBP	9.98	□□□□□ -0.81
RNF41-208	ENST00000550379	TEF	Q10587	303 aa		9.98	□□□□□ -0.81
RNF41-208	ENST00000550379	FAM98C	Q17RN3	349 aa	Known RBP	9.98	□□□□□ -0.81
RNF41-208	ENST00000550379	MCM10	Q7L590	875 aa		9.98	□□□□□ -0.81
RNF41-208	ENST00000550379	MARCH10	Q8NA82	808 aa	Predicted RBP	9.98	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 158.9 ms