RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 NBPF6Q5VWK0 638 aa16.35■□□□□ 0.21
SMARCD1-208ENST00000550280 NBPF4Q96M43 638 aa16.35■□□□□ 0.21
SMARCD1-208ENST00000550280 QSER1Q2KHR3 1735 aa16.34■□□□□ 0.21
SMARCD1-208ENST00000550280 FYB1O15117 783 aa16.34■□□□□ 0.21
SMARCD1-208ENST00000550280 SLC27A3Q5K4L6 730 aa16.34■□□□□ 0.21
SMARCD1-208ENST00000550280 LY75O60449 1722 aa16.33■□□□□ 0.21
SMARCD1-208ENST00000550280 AMPHP49418 695 aa16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 USHBP1Q8N6Y0 703 aa16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 ZCRB1Q8TBF4 217 aaKnown RBP16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 GGNBP2Q9H3C7 697 aa16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 RTL1A6NKG5 1358 aa16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 GOLGB1Q14789 3259 aaKnown RBP16.33■□□□□ 0.2
SMARCD1-208ENST00000550280 SYTL4Q96C24 671 aaPredicted RBP16.32■□□□□ 0.2
SMARCD1-208ENST00000550280 SLC16A10Q8TF71 515 aa16.3■□□□□ 0.2
SMARCD1-208ENST00000550280 USP47Q96K76 1375 aa16.29■□□□□ 0.2
SMARCD1-208ENST00000550280 HSP90AB2PQ58FF8 381 aa16.29■□□□□ 0.2
SMARCD1-208ENST00000550280 NLGN2Q8NFZ4 835 aa16.29■□□□□ 0.2
SMARCD1-208ENST00000550280 KAT6BQ8WYB5 2073 aa16.29■□□□□ 0.2
SMARCD1-208ENST00000550280 TFCP2L1Q9NZI6 479 aa16.28■□□□□ 0.2
SMARCD1-208ENST00000550280 COL23A1Q86Y22 540 aaPredicted RBP16.27■□□□□ 0.2
SMARCD1-208ENST00000550280 CARD14Q9BXL6 1004 aa16.27■□□□□ 0.2
SMARCD1-208ENST00000550280 CCNL1Q9UK58 526 aaPredicted RBP16.27■□□□□ 0.2
SMARCD1-208ENST00000550280 INSRP06213 1382 aa16.26■□□□□ 0.19
SMARCD1-208ENST00000550280 CYP27B1O15528 508 aa16.25■□□□□ 0.19
SMARCD1-208ENST00000550280 TMF1P82094 1093 aa16.25■□□□□ 0.19
SMARCD1-208ENST00000550280 AMIGO3Q86WK7 504 aa16.25■□□□□ 0.19
SMARCD1-208ENST00000550280 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
SMARCD1-208ENST00000550280 CHD4Q14839 1912 aa16.24■□□□□ 0.19
SMARCD1-208ENST00000550280 KLHL34Q8N239 644 aa16.24■□□□□ 0.19
SMARCD1-208ENST00000550280 EMILIN1Q9Y6C2 1016 aa16.24■□□□□ 0.19
SMARCD1-208ENST00000550280 NCAPD2Q15021 1401 aa16.24■□□□□ 0.19
SMARCD1-208ENST00000550280 FLT4P35916 1363 aa16.24■□□□□ 0.19
SMARCD1-208ENST00000550280 CGNL1Q0VF96 1302 aa16.23■□□□□ 0.19
SMARCD1-208ENST00000550280 POLD1P28340 1107 aa16.23■□□□□ 0.19
SMARCD1-208ENST00000550280 GPR162Q16538 588 aa16.23■□□□□ 0.19
SMARCD1-208ENST00000550280 RAPGEF4Q8WZA2 1011 aa16.23■□□□□ 0.19
SMARCD1-208ENST00000550280 KIF20BQ96Q89 1820 aa16.22■□□□□ 0.19
SMARCD1-208ENST00000550280 SLC24A1O60721 1099 aa16.22■□□□□ 0.19
SMARCD1-208ENST00000550280 YBX3P16989 372 aaKnown RBP eCLIP16.22■□□□□ 0.19
SMARCD1-208ENST00000550280 TATP17735 454 aaPredicted RBP16.22■□□□□ 0.19
SMARCD1-208ENST00000550280 MSL1Q68DK7 614 aa16.22■□□□□ 0.19
SMARCD1-208ENST00000550280 SMG6Q86US8 1419 aaKnown RBP16.21■□□□□ 0.19
SMARCD1-208ENST00000550280 KIF24Q5T7B8 1368 aa16.21■□□□□ 0.19
SMARCD1-208ENST00000550280 PALLDQ8WX93 1383 aa16.21■□□□□ 0.19
SMARCD1-208ENST00000550280 C5P01031 1676 aa16.21■□□□□ 0.18
SMARCD1-208ENST00000550280 PCDH11XQ9BZA7 1347 aa16.2■□□□□ 0.18
SMARCD1-208ENST00000550280 PCDH11YQ9BZA8 1340 aa16.2■□□□□ 0.18
SMARCD1-208ENST00000550280 NSD3Q9BZ95 1437 aa16.2■□□□□ 0.18
SMARCD1-208ENST00000550280 PKD1L3Q7Z443 1732 aa16.2■□□□□ 0.18
SMARCD1-208ENST00000550280 SMIM5Q71RC9 77 aa16.2■□□□□ 0.18
SMARCD1-208ENST00000550280 C1QTNF8P60827 252 aa16.19■□□□□ 0.18
SMARCD1-208ENST00000550280 TAF1LQ8IZX4 1826 aa16.18■□□□□ 0.18
SMARCD1-208ENST00000550280 MPRIPQ6WCQ1 1025 aa16.18■□□□□ 0.18
SMARCD1-208ENST00000550280 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
SMARCD1-208ENST00000550280 ANKRD26Q9UPS8 1709 aa16.18■□□□□ 0.18
SMARCD1-208ENST00000550280 MSH5O43196 834 aa16.17■□□□□ 0.18
SMARCD1-208ENST00000550280 PIGBQ92521 554 aa16.17■□□□□ 0.18
SMARCD1-208ENST00000550280 C4BP0C0L5 1744 aa16.16■□□□□ 0.18
SMARCD1-208ENST00000550280 NKX1-1Q15270 411 aaPredicted RBP16.16■□□□□ 0.18
SMARCD1-208ENST00000550280 MAP2P11137 1827 aaKnown RBP16.15■□□□□ 0.18
SMARCD1-208ENST00000550280 ITGB4P16144 1822 aa16.15■□□□□ 0.18
SMARCD1-208ENST00000550280 EYA1Q99502 592 aa16.15■□□□□ 0.18
SMARCD1-208ENST00000550280 SENP3-EIF4A1A0A087X0R7 540 aa16.14■□□□□ 0.17
SMARCD1-208ENST00000550280 WASHC2AQ641Q2 1341 aa16.14■□□□□ 0.17
SMARCD1-208ENST00000550280 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
SMARCD1-208ENST00000550280 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
SMARCD1-208ENST00000550280 UBR3Q6ZT12 1888 aa16.12■□□□□ 0.17
SMARCD1-208ENST00000550280 PPM1GO15355 546 aaPredicted RBP16.12■□□□□ 0.17
SMARCD1-208ENST00000550280 LINC00116Q8NCU8 138 aa16.12■□□□□ 0.17
SMARCD1-208ENST00000550280 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
SMARCD1-208ENST00000550280 ITPK1Q13572 414 aa16.11■□□□□ 0.17
SMARCD1-208ENST00000550280 ASAP1Q9ULH1 1129 aa16.11■□□□□ 0.17
SMARCD1-208ENST00000550280 CD2APQ9Y5K6 639 aa16.11■□□□□ 0.17
SMARCD1-208ENST00000550280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.1■□□□□ 0.17
SMARCD1-208ENST00000550280 PHF14O94880 888 aa16.1■□□□□ 0.17
SMARCD1-208ENST00000550280 SMARCC1Q92922 1105 aaPredicted RBP16.1■□□□□ 0.17
SMARCD1-208ENST00000550280 LOC102724428A0A0B4J2F2 783 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 GRIN3BO60391 1043 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 GIGYF1O75420 1035 aaPredicted RBP16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 PHKG2P15735 406 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 SIK1P57059 783 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 EIF4A2Q14240 407 aaKnown RBP16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 FLAD1Q8NFF5 587 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 AK7Q96M32 723 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 ADCY9O60503 1353 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 ATP10DQ9P241 1426 aa16.09■□□□□ 0.17
SMARCD1-208ENST00000550280 SLC4A9Q96Q91 983 aa16.08■□□□□ 0.16
SMARCD1-208ENST00000550280 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.08■□□□□ 0.16
SMARCD1-208ENST00000550280 SPG7Q9UQ90 795 aa16.08■□□□□ 0.16
SMARCD1-208ENST00000550280 ATG3Q9NT62 314 aa16.07■□□□□ 0.16
SMARCD1-208ENST00000550280 WWC3Q9ULE0 1092 aa16.07■□□□□ 0.16
SMARCD1-208ENST00000550280 KDRP35968 1356 aa16.07■□□□□ 0.16
SMARCD1-208ENST00000550280 CEP350Q5VT06 3117 aa16.07■□□□□ 0.16
SMARCD1-208ENST00000550280 SSFA2P28290 1259 aa16.06■□□□□ 0.16
SMARCD1-208ENST00000550280 IGSF1Q8N6C5 1336 aa16.05■□□□□ 0.16
SMARCD1-208ENST00000550280 IFNL2Q8IZJ0 200 aa16.05■□□□□ 0.16
SMARCD1-208ENST00000550280 TMOD3Q9NYL9 352 aa16.05■□□□□ 0.16
SMARCD1-208ENST00000550280 TNNT2P45379 298 aaPredicted RBP16.04■□□□□ 0.16
SMARCD1-208ENST00000550280 KDM6AO15550 1401 aaPredicted RBP16.03■□□□□ 0.16
SMARCD1-208ENST00000550280 KIAA1551Q9HCM1 1747 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms