RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 COL24A1Q17RW2 1714 aa13.94□□□□□ -0.18
TRAFD1-207ENST00000550051 FAM208AQ9UK61 1670 aaKnown RBP13.94□□□□□ -0.18
TRAFD1-207ENST00000550051 PRIM1P49642 420 aaKnown RBP13.93□□□□□ -0.18
TRAFD1-207ENST00000550051 TESK2Q96S53 571 aa13.92□□□□□ -0.18
TRAFD1-207ENST00000550051 ANKRD36BQ8N2N9 1353 aa13.92□□□□□ -0.18
TRAFD1-207ENST00000550051 MAP3K19Q56UN5 1328 aa13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 PNPLA7Q6ZV29 1317 aa13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 HOXC9P31274 260 aa13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 ZCRB1Q8TBF4 217 aaKnown RBP13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 LTV1Q96GA3 475 aaPredicted RBP13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 COG3Q96JB2 828 aa13.91□□□□□ -0.18
TRAFD1-207ENST00000550051 POLD1P28340 1107 aa13.9□□□□□ -0.18
TRAFD1-207ENST00000550051 AMPHP49418 695 aa13.9□□□□□ -0.18
TRAFD1-207ENST00000550051 GPR162Q16538 588 aa13.9□□□□□ -0.18
TRAFD1-207ENST00000550051 TFCP2L1Q9NZI6 479 aa13.9□□□□□ -0.18
TRAFD1-207ENST00000550051 LY75O60449 1722 aa13.9□□□□□ -0.18
TRAFD1-207ENST00000550051 C1QTNF8P60827 252 aa13.89□□□□□ -0.19
TRAFD1-207ENST00000550051 CGNL1Q0VF96 1302 aa13.89□□□□□ -0.19
TRAFD1-207ENST00000550051 NSD2O96028 1365 aa13.88□□□□□ -0.19
TRAFD1-207ENST00000550051 ST20-MTHFSA0A0A6YYL1 179 aa13.88□□□□□ -0.19
TRAFD1-207ENST00000550051 FBLN1P23142 703 aa13.88□□□□□ -0.19
TRAFD1-207ENST00000550051 SYTL4Q96C24 671 aaPredicted RBP13.88□□□□□ -0.19
TRAFD1-207ENST00000550051 RGPD2P0DJD1 1756 aa13.88□□□□□ -0.19
TRAFD1-207ENST00000550051 HMGB2P26583 209 aaKnown RBP13.87□□□□□ -0.19
TRAFD1-207ENST00000550051 KCNQ4P56696 695 aa13.87□□□□□ -0.19
TRAFD1-207ENST00000550051 TONSLQ96HA7 1378 aa13.86□□□□□ -0.19
TRAFD1-207ENST00000550051 TUBGCP6Q96RT7 1819 aa13.86□□□□□ -0.19
TRAFD1-207ENST00000550051 FYB1O15117 783 aa13.86□□□□□ -0.19
TRAFD1-207ENST00000550051 MYCNP04198 464 aaPredicted RBP13.86□□□□□ -0.19
TRAFD1-207ENST00000550051 SHANK3Q9BYB0 1731 aa13.86□□□□□ -0.19
TRAFD1-207ENST00000550051 DOT1LQ8TEK3 1739 aa13.85□□□□□ -0.19
TRAFD1-207ENST00000550051 NBPF6Q5VWK0 638 aa13.85□□□□□ -0.19
TRAFD1-207ENST00000550051 NBPF4Q96M43 638 aa13.85□□□□□ -0.19
TRAFD1-207ENST00000550051 CCNL1Q9UK58 526 aaPredicted RBP13.85□□□□□ -0.19
TRAFD1-207ENST00000550051 RTL1A6NKG5 1358 aa13.84□□□□□ -0.19
TRAFD1-207ENST00000550051 COL23A1Q86Y22 540 aaPredicted RBP13.84□□□□□ -0.19
TRAFD1-207ENST00000550051 MEGF6O75095 1541 aa13.84□□□□□ -0.19
TRAFD1-207ENST00000550051 USP47Q96K76 1375 aa13.83□□□□□ -0.19
TRAFD1-207ENST00000550051 GRIN3BO60391 1043 aa13.83□□□□□ -0.2
TRAFD1-207ENST00000550051 NLGN2Q8NFZ4 835 aa13.83□□□□□ -0.2
TRAFD1-207ENST00000550051 RAPGEF4Q8WZA2 1011 aa13.83□□□□□ -0.2
TRAFD1-207ENST00000550051 SENP3-EIF4A1A0A087X0R7 540 aa13.82□□□□□ -0.2
TRAFD1-207ENST00000550051 RRS1Q15050 365 aaKnown RBP13.82□□□□□ -0.2
TRAFD1-207ENST00000550051 KLHL34Q8N239 644 aa13.82□□□□□ -0.2
TRAFD1-207ENST00000550051 TATP17735 454 aaPredicted RBP13.81□□□□□ -0.2
TRAFD1-207ENST00000550051 FLAD1Q8NFF5 587 aa13.81□□□□□ -0.2
TRAFD1-207ENST00000550051 GGNBP2Q9H3C7 697 aa13.81□□□□□ -0.2
TRAFD1-207ENST00000550051 INSRP06213 1382 aa13.81□□□□□ -0.2
TRAFD1-207ENST00000550051 KIF24Q5T7B8 1368 aa13.81□□□□□ -0.2
TRAFD1-207ENST00000550051 TMF1P82094 1093 aa13.8□□□□□ -0.2
TRAFD1-207ENST00000550051 HSP90AB2PQ58FF8 381 aa13.8□□□□□ -0.2
TRAFD1-207ENST00000550051 PELP1Q8IZL8 1130 aaKnown RBP13.8□□□□□ -0.2
TRAFD1-207ENST00000550051 CD2APQ9Y5K6 639 aa13.8□□□□□ -0.2
TRAFD1-207ENST00000550051 GIGYF1O75420 1035 aaPredicted RBP13.79□□□□□ -0.2
TRAFD1-207ENST00000550051 YBX3P16989 372 aaKnown RBP eCLIP13.79□□□□□ -0.22e-6■■■■□ 20.1
TRAFD1-207ENST00000550051 USHBP1Q8N6Y0 703 aa13.79□□□□□ -0.2
TRAFD1-207ENST00000550051 SMG6Q86US8 1419 aaKnown RBP13.79□□□□□ -0.2
TRAFD1-207ENST00000550051 GOLGB1Q14789 3259 aaKnown RBP13.78□□□□□ -0.2
TRAFD1-207ENST00000550051 PCDH11XQ9BZA7 1347 aa13.78□□□□□ -0.2
TRAFD1-207ENST00000550051 PCDH11YQ9BZA8 1340 aa13.78□□□□□ -0.2
TRAFD1-207ENST00000550051 TAF1LQ8IZX4 1826 aa13.78□□□□□ -0.2
TRAFD1-207ENST00000550051 CYP27B1O15528 508 aa13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 C5P01031 1676 aa13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 NKX1-1Q15270 411 aaPredicted RBP13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 CDCA8Q53HL2 280 aa13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 MPRIPQ6WCQ1 1025 aa13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 SMARCC1Q92922 1105 aaPredicted RBP13.77□□□□□ -0.21
TRAFD1-207ENST00000550051 FLT4P35916 1363 aa13.76□□□□□ -0.21
TRAFD1-207ENST00000550051 ITGB4P16144 1822 aa13.76□□□□□ -0.21
TRAFD1-207ENST00000550051 PALLDQ8WX93 1383 aa13.75□□□□□ -0.21
TRAFD1-207ENST00000550051 MSL1Q68DK7 614 aa13.75□□□□□ -0.21
TRAFD1-207ENST00000550051 CARD14Q9BXL6 1004 aa13.75□□□□□ -0.21
TRAFD1-207ENST00000550051 U3KPZ7 1027 aaPredicted RBP13.75□□□□□ -0.21
TRAFD1-207ENST00000550051 PIGBQ92521 554 aa13.74□□□□□ -0.21
TRAFD1-207ENST00000550051 KIF20BQ96Q89 1820 aa13.74□□□□□ -0.21
TRAFD1-207ENST00000550051 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.73□□□□□ -0.214e-6■□□□□ 11.2
TRAFD1-207ENST00000550051 NCAPD2Q15021 1401 aa13.73□□□□□ -0.21
TRAFD1-207ENST00000550051 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
TRAFD1-207ENST00000550051 C4BP0C0L5 1744 aa13.72□□□□□ -0.21
TRAFD1-207ENST00000550051 PKD1L3Q7Z443 1732 aa13.72□□□□□ -0.21
TRAFD1-207ENST00000550051 WASHC2AQ641Q2 1341 aa13.71□□□□□ -0.21
TRAFD1-207ENST00000550051 AK7Q96M32 723 aa13.71□□□□□ -0.21
TRAFD1-207ENST00000550051 EMILIN1Q9Y6C2 1016 aa13.71□□□□□ -0.21
TRAFD1-207ENST00000550051 UBR3Q6ZT12 1888 aa13.71□□□□□ -0.21
TRAFD1-207ENST00000550051 MAP2P11137 1827 aaKnown RBP13.71□□□□□ -0.22
TRAFD1-207ENST00000550051 TOGARAM1Q9Y4F4 1720 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 LOC102724428A0A0B4J2F2 783 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 SSFA2P28290 1259 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 SIK1P57059 783 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 AMIGO3Q86WK7 504 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 NSD3Q9BZ95 1437 aa13.7□□□□□ -0.22
TRAFD1-207ENST00000550051 EYA1Q99502 592 aa13.69□□□□□ -0.22
TRAFD1-207ENST00000550051 ATP10DQ9P241 1426 aa13.69□□□□□ -0.22
TRAFD1-207ENST00000550051 ADCY9O60503 1353 aa13.68□□□□□ -0.22
TRAFD1-207ENST00000550051 ANKRD26Q9UPS8 1709 aa13.67□□□□□ -0.22
TRAFD1-207ENST00000550051 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
TRAFD1-207ENST00000550051 SMIM5Q71RC9 77 aa13.67□□□□□ -0.22
TRAFD1-207ENST00000550051 IFNL2Q8IZJ0 200 aa13.67□□□□□ -0.22
TRAFD1-207ENST00000550051 LINC00116Q8NCU8 138 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms