RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PPM1GO15355 546 aaPredicted RBP22.56■■□□□ 1.2
VPS29-207ENST00000549970 SHANK3Q9BYB0 1731 aa22.56■■□□□ 1.2
VPS29-207ENST00000549970 RAPGEF4Q8WZA2 1011 aa22.55■■□□□ 1.2
VPS29-207ENST00000549970 STK32BQ9NY57 414 aa22.54■■□□□ 1.2
VPS29-207ENST00000549970 SYTL4Q96C24 671 aaPredicted RBP22.53■■□□□ 1.2
VPS29-207ENST00000549970 SPON1Q9HCB6 807 aa22.53■■□□□ 1.2
VPS29-207ENST00000549970 DOT1LQ8TEK3 1739 aa22.52■■□□□ 1.2
VPS29-207ENST00000549970 TATP17735 454 aaPredicted RBP22.52■■□□□ 1.2
VPS29-207ENST00000549970 PANK3Q9H999 370 aa22.52■■□□□ 1.2
VPS29-207ENST00000549970 MAP2P11137 1827 aaKnown RBP22.52■■□□□ 1.2
VPS29-207ENST00000549970 ANKRD26Q9UPS8 1709 aa22.51■■□□□ 1.19
VPS29-207ENST00000549970 CASZ1Q86V15 1759 aa22.51■■□□□ 1.19
VPS29-207ENST00000549970 SLC15A2Q16348 729 aa22.51■■□□□ 1.19
VPS29-207ENST00000549970 PDGFDQ9GZP0 370 aaPredicted RBP22.51■■□□□ 1.19
VPS29-207ENST00000549970 TNNT2P45379 298 aaPredicted RBP22.5■■□□□ 1.19
VPS29-207ENST00000549970 PRIM1P49642 420 aaKnown RBP22.5■■□□□ 1.19
VPS29-207ENST00000549970 POLKQ9UBT6 870 aa22.48■■□□□ 1.19
VPS29-207ENST00000549970 PPP1R1BQ9UD71 204 aaPredicted RBP22.48■■□□□ 1.19
VPS29-207ENST00000549970 WASHC2AQ641Q2 1341 aa22.48■■□□□ 1.19
VPS29-207ENST00000549970 PAPPAQ13219 1627 aa22.47■■□□□ 1.19
VPS29-207ENST00000549970 ZBTB7AO95365 584 aa22.47■■□□□ 1.19
VPS29-207ENST00000549970 LRRC4BQ9NT99 713 aa22.46■■□□□ 1.19
VPS29-207ENST00000549970 NSD2O96028 1365 aa22.46■■□□□ 1.19
VPS29-207ENST00000549970 PCDH11XQ9BZA7 1347 aa22.45■■□□□ 1.18
VPS29-207ENST00000549970 PCDH11YQ9BZA8 1340 aa22.45■■□□□ 1.18
VPS29-207ENST00000549970 ZNF827Q17R98 1081 aa22.43■■□□□ 1.18
VPS29-207ENST00000549970 NCAPD2Q15021 1401 aa22.42■■□□□ 1.18
VPS29-207ENST00000549970 KCNQ4P56696 695 aa22.42■■□□□ 1.18
VPS29-207ENST00000549970 SLC27A3Q5K4L6 730 aa22.42■■□□□ 1.18
VPS29-207ENST00000549970 EYA1Q99502 592 aa22.42■■□□□ 1.18
VPS29-207ENST00000549970 ATF5Q9Y2D1 282 aaPredicted RBP22.42■■□□□ 1.18
VPS29-207ENST00000549970 LY75O60449 1722 aa22.4■■□□□ 1.18
VPS29-207ENST00000549970 PKD1L3Q7Z443 1732 aa22.4■■□□□ 1.18
VPS29-207ENST00000549970 CYP27B1O15528 508 aa22.4■■□□□ 1.18
VPS29-207ENST00000549970 EIF4A2Q14240 407 aaKnown RBP22.4■■□□□ 1.18
VPS29-207ENST00000549970 KIF7Q2M1P5 1343 aa22.39■■□□□ 1.18
VPS29-207ENST00000549970 KNSTRNQ9Y448 316 aa22.39■■□□□ 1.17
VPS29-207ENST00000549970 MORC1Q86VD1 984 aa22.38■■□□□ 1.17
VPS29-207ENST00000549970 PTGER2P43116 358 aa22.37■■□□□ 1.17
VPS29-207ENST00000549970 AKT1S1Q96B36 256 aa22.37■■□□□ 1.17
VPS29-207ENST00000549970 MTFR1LQ9H019 292 aa22.37■■□□□ 1.17
VPS29-207ENST00000549970 CCNL1Q9UK58 526 aaPredicted RBP22.37■■□□□ 1.17
VPS29-207ENST00000549970 SPG7Q9UQ90 795 aa22.37■■□□□ 1.17
VPS29-207ENST00000549970 MPRIPQ6WCQ1 1025 aa22.36■■□□□ 1.17
VPS29-207ENST00000549970 TOGARAM1Q9Y4F4 1720 aa22.36■■□□□ 1.17
VPS29-207ENST00000549970 TFCP2L1Q9NZI6 479 aa22.33■■□□□ 1.17
VPS29-207ENST00000549970 ITGB4P16144 1822 aa22.33■■□□□ 1.16
VPS29-207ENST00000549970 QSER1Q2KHR3 1735 aa22.32■■□□□ 1.16
VPS29-207ENST00000549970 TUBGCP6Q96RT7 1819 aa22.32■■□□□ 1.16
VPS29-207ENST00000549970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.32■■□□□ 1.16
VPS29-207ENST00000549970 PNPLA7Q6ZV29 1317 aa22.31■■□□□ 1.16
VPS29-207ENST00000549970 IGSF1Q8N6C5 1336 aa22.31■■□□□ 1.16
VPS29-207ENST00000549970 PALLDQ8WX93 1383 aa22.31■■□□□ 1.16
VPS29-207ENST00000549970 NKX1-1Q15270 411 aaPredicted RBP22.31■■□□□ 1.16
VPS29-207ENST00000549970 AMER1Q5JTC6 1135 aaPredicted RBP22.3■■□□□ 1.16
VPS29-207ENST00000549970 SGIP1Q9BQI5 828 aa22.3■■□□□ 1.16
VPS29-207ENST00000549970 IFNL2Q8IZJ0 200 aa22.29■■□□□ 1.16
VPS29-207ENST00000549970 PHKG2P15735 406 aa22.28■■□□□ 1.16
VPS29-207ENST00000549970 PIGBQ92521 554 aa22.28■■□□□ 1.16
VPS29-207ENST00000549970 FHDC1Q9C0D6 1143 aaPredicted RBP22.27■■□□□ 1.16
VPS29-207ENST00000549970 C5P01031 1676 aa22.26■■□□□ 1.15
VPS29-207ENST00000549970 DCAF8L1A6NGE4 600 aa22.26■■□□□ 1.15
VPS29-207ENST00000549970 SLC16A10Q8TF71 515 aa22.26■■□□□ 1.15
VPS29-207ENST00000549970 SMARCC1Q92922 1105 aaPredicted RBP22.26■■□□□ 1.15
VPS29-207ENST00000549970 AEBP1Q8IUX7 1158 aa22.25■■□□□ 1.15
VPS29-207ENST00000549970 ARXQ96QS3 562 aa22.25■■□□□ 1.15
VPS29-207ENST00000549970 TMOD3Q9NYL9 352 aa22.25■■□□□ 1.15
VPS29-207ENST00000549970 PLEKHG2Q9H7P9 1386 aa22.25■■□□□ 1.15
VPS29-207ENST00000549970 MSH5O43196 834 aa22.24■■□□□ 1.15
VPS29-207ENST00000549970 SYT17Q9BSW7 474 aa22.24■■□□□ 1.15
VPS29-207ENST00000549970 TAF1LQ8IZX4 1826 aa22.24■■□□□ 1.15
VPS29-207ENST00000549970 PLEKHO1Q53GL0 409 aaPredicted RBP22.23■■□□□ 1.15
VPS29-207ENST00000549970 CC2D1BQ5T0F9 858 aaKnown RBP22.23■■□□□ 1.15
VPS29-207ENST00000549970 PER1O15534 1290 aaPredicted RBP22.22■■□□□ 1.15
VPS29-207ENST00000549970 POLD1P28340 1107 aa22.21■■□□□ 1.15
VPS29-207ENST00000549970 IL13P35225 146 aa22.21■■□□□ 1.15
VPS29-207ENST00000549970 SULT6B1Q6IMI4 303 aa22.21■■□□□ 1.15
VPS29-207ENST00000549970 COL23A1Q86Y22 540 aaPredicted RBP22.21■■□□□ 1.15
VPS29-207ENST00000549970 MTHFSP49914 203 aa22.2■■□□□ 1.14
VPS29-207ENST00000549970 CNGB1Q14028 1251 aaPredicted RBP22.2■■□□□ 1.14
VPS29-207ENST00000549970 ZNF530Q6P9A1 599 aaPredicted RBP22.2■■□□□ 1.14
VPS29-207ENST00000549970 ASAP1Q9ULH1 1129 aa22.2■■□□□ 1.14
VPS29-207ENST00000549970 C4BP0C0L5 1744 aa22.2■■□□□ 1.14
VPS29-207ENST00000549970 UTRNP46939 3433 aa22.19■■□□□ 1.14
VPS29-207ENST00000549970 HMGB2P26583 209 aaKnown RBP22.19■■□□□ 1.14
VPS29-207ENST00000549970 AMOTQ4VCS5 1084 aa22.19■■□□□ 1.14
VPS29-207ENST00000549970 KLHL34Q8N239 644 aa22.19■■□□□ 1.14
VPS29-207ENST00000549970 COL24A1Q17RW2 1714 aa22.19■■□□□ 1.14
VPS29-207ENST00000549970 LOC102724428A0A0B4J2F2 783 aa22.18■■□□□ 1.14
VPS29-207ENST00000549970 HSP90AB1P08238 724 aaKnown RBP22.18■■□□□ 1.14
VPS29-207ENST00000549970 SIK1P57059 783 aa22.18■■□□□ 1.14
VPS29-207ENST00000549970 AK7Q96M32 723 aa22.18■■□□□ 1.14
VPS29-207ENST00000549970 DCAF5Q96JK2 942 aa22.17■■□□□ 1.14
VPS29-207ENST00000549970 ATG3Q9NT62 314 aa22.17■■□□□ 1.14
VPS29-207ENST00000549970 KDRP35968 1356 aa22.16■■□□□ 1.14
VPS29-207ENST00000549970 ERVV-2B6SEH9 535 aa22.16■■□□□ 1.14
VPS29-207ENST00000549970 MSL1Q68DK7 614 aa22.16■■□□□ 1.14
VPS29-207ENST00000549970 KDM6AO15550 1401 aaPredicted RBP22.15■■□□□ 1.14
VPS29-207ENST00000549970 MAP3K5Q99683 1374 aa22.15■■□□□ 1.14
VPS29-207ENST00000549970 YY1P25490 414 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms