RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 RGL3Q3MIN7 710 aa9.81□□□□□ -0.84
LIMA1-204ENST00000549064 PHRF1Q9P1Y6 1649 aaKnown RBP9.81□□□□□ -0.84
LIMA1-204ENST00000549064 PDE3BQ13370 1112 aa9.8□□□□□ -0.84
LIMA1-204ENST00000549064 ANO8Q9HCE9 1232 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-204ENST00000549064 BMP2KQ9NSY1 1161 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-204ENST00000549064 PIK3C2GO75747 1445 aa9.8□□□□□ -0.84
LIMA1-204ENST00000549064 SBF2Q86WG5 1849 aa9.79□□□□□ -0.84
LIMA1-204ENST00000549064 KIAA0232Q92628 1395 aa9.79□□□□□ -0.84
LIMA1-204ENST00000549064 ZBTB7AO95365 584 aa9.79□□□□□ -0.84
LIMA1-204ENST00000549064 MICALL2Q8IY33 904 aa9.79□□□□□ -0.84
LIMA1-204ENST00000549064 TMC2Q8TDI7 906 aa9.79□□□□□ -0.84
LIMA1-204ENST00000549064 RGPD3A6NKT7 1758 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-204ENST00000549064 RGPD4Q7Z3J3 1758 aa9.78□□□□□ -0.84
LIMA1-204ENST00000549064 TRIM35Q9UPQ4 493 aa9.78□□□□□ -0.84
LIMA1-204ENST00000549064 ANKARQ7Z5J8 1434 aa9.78□□□□□ -0.84
LIMA1-204ENST00000549064 ACIN1Q9UKV3 1341 aaKnown RBP9.78□□□□□ -0.84
LIMA1-204ENST00000549064 GPRASP1Q5JY77 1395 aa9.77□□□□□ -0.84
LIMA1-204ENST00000549064 SPATA31E1Q6ZUB1 1445 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 SSH2Q76I76 1423 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 PTGER2P43116 358 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 SIRT1Q96EB6 747 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 PRAM1Q96QH2 718 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 PRR36Q9H6K5 1346 aa9.77□□□□□ -0.85
LIMA1-204ENST00000549064 ANKRD30BQ9BXX2 1392 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 PEAK1Q9H792 1746 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 PARP4Q9UKK3 1724 aaKnown RBP9.76□□□□□ -0.85
LIMA1-204ENST00000549064 GRXCR2A6NFK2 248 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 ZC3H6P61129 1189 aaKnown RBP9.76□□□□□ -0.85
LIMA1-204ENST00000549064 FOXK1P85037 733 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 PLPP6Q8IY26 295 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 SYT17Q9BSW7 474 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 HIRIP3Q9BW71 556 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-204ENST00000549064 FAM117AQ9C073 453 aa9.76□□□□□ -0.85
LIMA1-204ENST00000549064 FHDC1Q9C0D6 1143 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-204ENST00000549064 NUTM2GQ5VZR2 741 aa9.75□□□□□ -0.85
LIMA1-204ENST00000549064 LARP1Q6PKG0 1096 aaKnown RBP9.75□□□□□ -0.85
LIMA1-204ENST00000549064 PTF1AQ7RTS3 328 aa9.75□□□□□ -0.85
LIMA1-204ENST00000549064 PPARGC1BQ86YN6 1023 aaKnown RBP9.75□□□□□ -0.85
LIMA1-204ENST00000549064 LMO7Q8WWI1 1683 aa9.74□□□□□ -0.85
LIMA1-204ENST00000549064 C19orf67A6NJJ6 358 aa9.74□□□□□ -0.85
LIMA1-204ENST00000549064 EVA1CP58658 441 aa9.74□□□□□ -0.85
LIMA1-204ENST00000549064 CFAP70Q5T0N1 1121 aa9.74□□□□□ -0.85
LIMA1-204ENST00000549064 ZMYND15Q9H091 742 aa9.74□□□□□ -0.85
LIMA1-204ENST00000549064 GOLGB1Q14789 3259 aaKnown RBP9.74□□□□□ -0.85
LIMA1-204ENST00000549064 DLC1Q96QB1 1528 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 TULP4Q9NRJ4 1543 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 GIGYF1O75420 1035 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-204ENST00000549064 TCP11L2Q8N4U5 519 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 NGDNQ8NEJ9 315 aaKnown RBP9.73□□□□□ -0.85
LIMA1-204ENST00000549064 CCDC102AQ96A19 550 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 C14orf93Q9H972 538 aaKnown RBP9.73□□□□□ -0.85
LIMA1-204ENST00000549064 POGKQ9P215 609 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 LRRC37A3O60309 1634 aa9.73□□□□□ -0.85
LIMA1-204ENST00000549064 DHX57Q6P158 1386 aaKnown RBP9.73□□□□□ -0.85
LIMA1-204ENST00000549064 C2orf72A6NCS6 295 aa9.72□□□□□ -0.85
LIMA1-204ENST00000549064 PDCD7Q8N8D1 485 aaKnown RBP9.72□□□□□ -0.85
LIMA1-204ENST00000549064 SHANK3Q9BYB0 1731 aa9.72□□□□□ -0.85
LIMA1-204ENST00000549064 MINK1Q8N4C8 1332 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-204ENST00000549064 OVOS2A0A0G2JMS6 1433 aa9.72□□□□□ -0.85
LIMA1-204ENST00000549064 OVOS2A0A0J9YW53 1432 aa9.72□□□□□ -0.85
LIMA1-204ENST00000549064 OVOS2Q6IE36 1432 aa9.72□□□□□ -0.85
LIMA1-204ENST00000549064 ITSN1Q15811 1721 aa9.71□□□□□ -0.85
LIMA1-204ENST00000549064 ZNF316A6NFI3 1004 aaPredicted RBP9.71□□□□□ -0.86
LIMA1-204ENST00000549064 PLSCR1O15162 318 aa9.71□□□□□ -0.86
LIMA1-204ENST00000549064 GALR2O43603 387 aaPredicted RBP9.71□□□□□ -0.86
LIMA1-204ENST00000549064 WNK3Q9BYP7 1800 aa9.7□□□□□ -0.86
LIMA1-204ENST00000549064 MAP3K9P80192 1104 aa9.7□□□□□ -0.86
LIMA1-204ENST00000549064 MAP2K5Q13163 448 aa9.7□□□□□ -0.86
LIMA1-204ENST00000549064 RSPH6AQ9H0K4 717 aa9.7□□□□□ -0.86
LIMA1-204ENST00000549064 AKAP12Q02952 1782 aa9.7□□□□□ -0.86
LIMA1-204ENST00000549064 PLEKHG3A1L390 1219 aa9.69□□□□□ -0.86
LIMA1-204ENST00000549064 ATP7BP35670 1465 aa9.69□□□□□ -0.86
LIMA1-204ENST00000549064 ADGRB1O14514 1584 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 COL5A2P05997 1499 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-204ENST00000549064 EIF3AQ14152 1382 aaKnown RBP9.68□□□□□ -0.86
LIMA1-204ENST00000549064 WASLO00401 505 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-204ENST00000549064 IRF6O14896 467 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 SLC15A2Q16348 729 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 GPR162Q16538 588 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 PARP9Q8IXQ6 854 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 STK32BQ9NY57 414 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 TRAK1Q9UPV9 953 aa9.68□□□□□ -0.86
LIMA1-204ENST00000549064 KIF3CO14782 793 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 OSBPP22059 807 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 FECHP22830 423 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 TXNRD1Q16881 649 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 MTFR1LQ9H019 292 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 THRAP3Q9Y2W1 955 aaKnown RBP9.67□□□□□ -0.86
LIMA1-204ENST00000549064 BOLA1Q9Y3E2 137 aa9.67□□□□□ -0.86
LIMA1-204ENST00000549064 GNPATO15228 680 aa9.66□□□□□ -0.86
LIMA1-204ENST00000549064 DDRGK1Q96HY6 314 aa9.66□□□□□ -0.86
LIMA1-204ENST00000549064 TOPAZ1Q8N9V7 1692 aa9.66□□□□□ -0.86
LIMA1-204ENST00000549064 CRB1P82279 1406 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 CPDO75976 1380 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 ZBTB7CA1YPR0 619 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 C11orf95C9JLR9 678 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-204ENST00000549064 ATN1P54259 1190 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-204ENST00000549064 DDB1Q16531 1140 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 AMHR2Q16671 573 aa9.65□□□□□ -0.86
LIMA1-204ENST00000549064 PELP1Q8IZL8 1130 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms