RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GALNT6Q8NCL4 622 aa8.79□□□□□ -1
VPS29-205ENST00000548539 OCSTAMPQ9BR26 566 aa8.79□□□□□ -1
VPS29-205ENST00000548539 IGF1RP08069 1367 aa8.78□□□□□ -1
VPS29-205ENST00000548539 ERVH48-1M5A8F1 160 aa8.78□□□□□ -1
VPS29-205ENST00000548539 LILRA1O75019 489 aa8.78□□□□□ -1
VPS29-205ENST00000548539 BCRP11274 1271 aa8.78□□□□□ -1
VPS29-205ENST00000548539 TRIM22Q8IYM9 498 aa8.78□□□□□ -1
VPS29-205ENST00000548539 KDF1Q8NAX2 398 aaPredicted RBP8.78□□□□□ -1
VPS29-205ENST00000548539 ZNF837Q96EG3 531 aaPredicted RBP8.78□□□□□ -1
VPS29-205ENST00000548539 GPR25O00155 361 aa8.77□□□□□ -1.01
VPS29-205ENST00000548539 RHOQP17081 205 aa8.77□□□□□ -1.01
VPS29-205ENST00000548539 DZIP3Q86Y13 1208 aaKnown RBP8.77□□□□□ -1.01
VPS29-205ENST00000548539 RNF144AP50876 292 aaPredicted RBP8.76□□□□□ -1.01
VPS29-205ENST00000548539 RIPOR1Q6ZS17 1223 aa8.76□□□□□ -1.01
VPS29-205ENST00000548539 TRIM52Q96A61 297 aa8.76□□□□□ -1.01
VPS29-205ENST00000548539 ITGB2P05107 769 aa8.75□□□□□ -1.01
VPS29-205ENST00000548539 DBN1Q16643 649 aa8.75□□□□□ -1.01
VPS29-205ENST00000548539 SLC24A3Q9HC58 644 aa8.75□□□□□ -1.01
VPS29-205ENST00000548539 H7C1W4 665 aa8.74□□□□□ -1.01
VPS29-205ENST00000548539 PROCP04070 461 aa8.74□□□□□ -1.01
VPS29-205ENST00000548539 PNMA1Q8ND90 353 aa8.74□□□□□ -1.01
VPS29-205ENST00000548539 TRERF1Q96PN7 1200 aa8.74□□□□□ -1.01
VPS29-205ENST00000548539 PPP2R2DQ66LE6 453 aa8.73□□□□□ -1.01
VPS29-205ENST00000548539 ACDQ96AP0 544 aa8.73□□□□□ -1.01
VPS29-205ENST00000548539 GTPBP3Q969Y2 492 aaKnown RBP8.72□□□□□ -1.01
VPS29-205ENST00000548539 CYLDQ9NQC7 956 aa8.72□□□□□ -1.01
VPS29-205ENST00000548539 LRRC4BQ9NT99 713 aa8.72□□□□□ -1.01
VPS29-205ENST00000548539 ESPNB1AK53 854 aa8.71□□□□□ -1.02
VPS29-205ENST00000548539 K7ELQ4 463 aaPredicted RBP8.71□□□□□ -1.02
VPS29-205ENST00000548539 GAS2L1Q99501 681 aaPredicted RBP8.71□□□□□ -1.02
VPS29-205ENST00000548539 ATP1B4Q9UN42 357 aaPredicted RBP8.71□□□□□ -1.02
VPS29-205ENST00000548539 NSFL1CQ9UNZ2 370 aaKnown RBP8.71□□□□□ -1.02
VPS29-205ENST00000548539 DYRK1BQ9Y463 629 aa8.71□□□□□ -1.02
VPS29-205ENST00000548539 ATP5J2-PTCD1G3V325 749 aa8.7□□□□□ -1.02
VPS29-205ENST00000548539 MX2P20592 715 aa8.7□□□□□ -1.02
VPS29-205ENST00000548539 SEPT12Q8IYM1 358 aa8.7□□□□□ -1.02
VPS29-205ENST00000548539 MEN1O00255 615 aa8.69□□□□□ -1.02
VPS29-205ENST00000548539 AP1G2O75843 785 aa8.69□□□□□ -1.02
VPS29-205ENST00000548539 GPC1P35052 558 aa8.69□□□□□ -1.02
VPS29-205ENST00000548539 BRPF1P55201 1214 aaPredicted RBP8.68□□□□□ -1.02
VPS29-205ENST00000548539 POU4F2Q12837 409 aa8.68□□□□□ -1.02
VPS29-205ENST00000548539 SKIV2LQ15477 1246 aaKnown RBP8.68□□□□□ -1.02
VPS29-205ENST00000548539 EPS8L1Q8TE68 723 aa8.68□□□□□ -1.02
VPS29-205ENST00000548539 OIP5O43482 229 aa8.67□□□□□ -1.02
VPS29-205ENST00000548539 SLC27A3Q5K4L6 730 aa8.67□□□□□ -1.02
VPS29-205ENST00000548539 A0A1W2PRU2 124 aa8.66□□□□□ -1.02
VPS29-205ENST00000548539 NEUROD2Q15784 382 aa8.66□□□□□ -1.02
VPS29-205ENST00000548539 FBXO31Q5XUX0 539 aaPredicted RBP8.66□□□□□ -1.02
VPS29-205ENST00000548539 BAG6P46379 1132 aa8.65□□□□□ -1.02
VPS29-205ENST00000548539 PROCA1Q8NCQ7 364 aaPredicted RBP8.65□□□□□ -1.02
VPS29-205ENST00000548539 NLRP3Q96P20 1036 aa8.65□□□□□ -1.02
VPS29-205ENST00000548539 OXCT2Q9BYC2 517 aaPredicted RBP8.65□□□□□ -1.02
VPS29-205ENST00000548539 MAP2K3P46734 347 aa8.64□□□□□ -1.03
VPS29-205ENST00000548539 SNRPNP63162 240 aaKnown RBP8.64□□□□□ -1.03
VPS29-205ENST00000548539 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS29-205ENST00000548539 NUCKS1Q9H1E3 243 aaKnown RBP8.64□□□□□ -1.03
VPS29-205ENST00000548539 MKL2Q9ULH7 1088 aa8.64□□□□□ -1.03
VPS29-205ENST00000548539 KRBA1A5PL33 1030 aa8.63□□□□□ -1.03
VPS29-205ENST00000548539 TMEM132AQ24JP5 1023 aa8.63□□□□□ -1.03
VPS29-205ENST00000548539 NBPF10Q6P3W6 841 aaKnown RBP8.63□□□□□ -1.03
VPS29-205ENST00000548539 ALYREFQ86V81 257 aaKnown RBP8.63□□□□□ -1.03
VPS29-205ENST00000548539 Q8N3U1 123 aa8.63□□□□□ -1.03
VPS29-205ENST00000548539 NBPF15Q8N660 670 aa8.63□□□□□ -1.03
VPS29-205ENST00000548539 GIGYF1O75420 1035 aaPredicted RBP8.62□□□□□ -1.03
VPS29-205ENST00000548539 SH3D19Q5HYK7 790 aa8.62□□□□□ -1.03
VPS29-205ENST00000548539 HMX1Q9NP08 348 aaPredicted RBP8.62□□□□□ -1.03
VPS29-205ENST00000548539 TIMMDC1Q9NPL8 285 aa8.62□□□□□ -1.03
VPS29-205ENST00000548539 F11P03951 625 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 FURINP09958 794 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 WDR44Q5JSH3 913 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 CCDC125Q86Z20 511 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 GRIP2Q9C0E4 1043 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 RRAGCQ9HB90 399 aa8.61□□□□□ -1.03
VPS29-205ENST00000548539 USP17L8P0C7I0 530 aa8.6□□□□□ -1.03
VPS29-205ENST00000548539 CC2D2BQ6DHV5 1058 aa8.6□□□□□ -1.03
VPS29-205ENST00000548539 CFHR5Q9BXR6 569 aa8.6□□□□□ -1.03
VPS29-205ENST00000548539 GTF3C3Q9Y5Q9 886 aa8.6□□□□□ -1.03
VPS29-205ENST00000548539 SPATA31C2B4DYI2 1134 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 SHISA8B8ZZ34 492 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 ERVK-9P63128 1117 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 CLN3Q13286 438 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 TAS1R3Q7RTX0 852 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 PCDHB9Q9Y5E1 797 aa8.59□□□□□ -1.03
VPS29-205ENST00000548539 CYP2U1Q7Z449 544 aa8.58□□□□□ -1.04
VPS29-205ENST00000548539 GDF2Q9UK05 429 aaPredicted RBP8.58□□□□□ -1.04
VPS29-205ENST00000548539 PHF24Q9UPV7 400 aa8.58□□□□□ -1.04
VPS29-205ENST00000548539 WASLO00401 505 aaPredicted RBP8.57□□□□□ -1.04
VPS29-205ENST00000548539 COL8A1P27658 744 aa8.57□□□□□ -1.04
VPS29-205ENST00000548539 RNF20Q5VTR2 975 aa8.57□□□□□ -1.04
VPS29-205ENST00000548539 EDARADDQ8WWZ3 215 aa8.57□□□□□ -1.04
VPS29-205ENST00000548539 KLRG1Q96E93 195 aa8.57□□□□□ -1.04
VPS29-205ENST00000548539 ESF1Q9H501 851 aaKnown RBP8.57□□□□□ -1.04
VPS29-205ENST00000548539 ZBBXA8MT70 800 aa8.56□□□□□ -1.04
VPS29-205ENST00000548539 AMPD1P23109 780 aa8.55□□□□□ -1.04
VPS29-205ENST00000548539 GRIN2CQ14957 1233 aa8.55□□□□□ -1.04
VPS29-205ENST00000548539 C1orf229Q6ZS94 237 aaPredicted RBP8.55□□□□□ -1.04
VPS29-205ENST00000548539 GPBP1L1Q9HC44 474 aaPredicted RBP8.55□□□□□ -1.04
VPS29-205ENST00000548539 DDRGK1Q96HY6 314 aa8.54□□□□□ -1.04
VPS29-205ENST00000548539 PSMG3-AS1Q96PY0 264 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms