RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 ARHGAP45Q92619 1136 aa17.21■□□□□ 0.35
PTCH1-215ENST00000547672 NBPF4Q96M43 638 aa17.21■□□□□ 0.35
PTCH1-215ENST00000547672 MED1Q15648 1581 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-215ENST00000547672 MAP3K5Q99683 1374 aa17.2■□□□□ 0.34
PTCH1-215ENST00000547672 ZC3H6P61129 1189 aaKnown RBP17.2■□□□□ 0.34
PTCH1-215ENST00000547672 FTSJ3Q8IY81 847 aaKnown RBP17.2■□□□□ 0.34
PTCH1-215ENST00000547672 VAMP4O75379 141 aa17.19■□□□□ 0.34
PTCH1-215ENST00000547672 TWISTNBQ3B726 338 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-215ENST00000547672 FAM83GA6ND36 823 aa17.18■□□□□ 0.34
PTCH1-215ENST00000547672 TAF7Q15545 349 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-215ENST00000547672 AKAP4Q5JQC9 854 aa17.18■□□□□ 0.34
PTCH1-215ENST00000547672 C1orf141Q5JVX7 400 aa17.18■□□□□ 0.34
PTCH1-215ENST00000547672 DZIP1LQ8IYY4 767 aaKnown RBP17.18■□□□□ 0.34
PTCH1-215ENST00000547672 SSH1Q8WYL5 1049 aa17.18■□□□□ 0.34
PTCH1-215ENST00000547672 THUMPD2Q9BTF0 503 aaKnown RBP17.18■□□□□ 0.34
PTCH1-215ENST00000547672 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTCH1-215ENST00000547672 NCAPD2Q15021 1401 aa17.18■□□□□ 0.34
PTCH1-215ENST00000547672 ATF7IPQ6VMQ6 1270 aa17.17■□□□□ 0.34
PTCH1-215ENST00000547672 MCM10Q7L590 875 aa17.17■□□□□ 0.34
PTCH1-215ENST00000547672 RAPGEF4Q8WZA2 1011 aa17.17■□□□□ 0.34
PTCH1-215ENST00000547672 DDX17Q92841 729 aaKnown RBP17.17■□□□□ 0.34
PTCH1-215ENST00000547672 LRRC59Q96AG4 307 aaKnown RBP17.17■□□□□ 0.34
PTCH1-215ENST00000547672 ERBB3P21860 1342 aa17.17■□□□□ 0.34
PTCH1-215ENST00000547672 CSB-PGBD3P0DP91 1061 aa17.16■□□□□ 0.34
PTCH1-215ENST00000547672 DCTN1Q14203 1278 aa17.16■□□□□ 0.34
PTCH1-215ENST00000547672 C20orf194Q5TEA3 1177 aa17.16■□□□□ 0.34
PTCH1-215ENST00000547672 TSPYL4Q9UJ04 414 aa17.16■□□□□ 0.34
PTCH1-215ENST00000547672 SPG7Q9UQ90 795 aa17.16■□□□□ 0.34
PTCH1-215ENST00000547672 CRB1P82279 1406 aa17.15■□□□□ 0.34
PTCH1-215ENST00000547672 TATP17735 454 aaPredicted RBP17.15■□□□□ 0.34
PTCH1-215ENST00000547672 CENPQQ7L2Z9 268 aaPredicted RBP17.15■□□□□ 0.34
PTCH1-215ENST00000547672 NLRP2Q9NX02 1062 aa17.15■□□□□ 0.34
PTCH1-215ENST00000547672 FAM208AQ9UK61 1670 aaKnown RBP17.15■□□□□ 0.34
PTCH1-215ENST00000547672 PLEKHG5O94827 1062 aa17.14■□□□□ 0.33
PTCH1-215ENST00000547672 API5Q9BZZ5 524 aaKnown RBP17.14■□□□□ 0.33
PTCH1-215ENST00000547672 DDX19BQ9UMR2 479 aa17.14■□□□□ 0.33
PTCH1-215ENST00000547672 AXIN2Q9Y2T1 843 aa17.14■□□□□ 0.33
PTCH1-215ENST00000547672 ZNF530Q6P9A1 599 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-215ENST00000547672 USHBP1Q8N6Y0 703 aa17.13■□□□□ 0.33
PTCH1-215ENST00000547672 PRDM11Q9NQV5 511 aa17.13■□□□□ 0.33
PTCH1-215ENST00000547672 NOB1Q9ULX3 412 aaKnown RBP17.13■□□□□ 0.33
PTCH1-215ENST00000547672 OVOS2A0A0G2JMS6 1433 aa17.13■□□□□ 0.33
PTCH1-215ENST00000547672 HSP90AB1P08238 724 aaKnown RBP17.12■□□□□ 0.33
PTCH1-215ENST00000547672 MVPQ14764 893 aaKnown RBP17.12■□□□□ 0.33
PTCH1-215ENST00000547672 CLUAP1Q96AJ1 413 aa17.12■□□□□ 0.33
PTCH1-215ENST00000547672 BCL2L13Q9BXK5 485 aa17.12■□□□□ 0.33
PTCH1-215ENST00000547672 NHSL1Q5SYE7 1610 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 CAMTA1Q9Y6Y1 1673 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 TEFQ10587 303 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 MRPL50Q8N5N7 158 aaKnown RBP17.11■□□□□ 0.33
PTCH1-215ENST00000547672 C8orf58Q8NAV2 365 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 CABLES1Q8TDN4 633 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 PANK1Q8TE04 598 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 COG6Q9Y2V7 657 aa17.11■□□□□ 0.33
PTCH1-215ENST00000547672 TOM1O60784 492 aa17.1■□□□□ 0.33
PTCH1-215ENST00000547672 IL17REQ8NFR9 667 aa17.1■□□□□ 0.33
PTCH1-215ENST00000547672 HOXB7P09629 217 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 TRIM27P14373 513 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 CCDC30Q5VVM6 783 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 TSPYL6Q8N831 410 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 STK31Q9BXU1 1019 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 RWDD1Q9H446 243 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-215ENST00000547672 PTPRCP08575 1304 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 CEMIPQ8WUJ3 1361 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 COL18A1P39060 1754 aa17.09■□□□□ 0.33
PTCH1-215ENST00000547672 ELL2O00472 640 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-215ENST00000547672 TCERG1O14776 1098 aaKnown RBP17.08■□□□□ 0.32
PTCH1-215ENST00000547672 EVA1CP58658 441 aa17.08■□□□□ 0.32
PTCH1-215ENST00000547672 CRYBG1Q9Y4K1 1723 aa17.07■□□□□ 0.32
PTCH1-215ENST00000547672 WDR17Q8IZU2 1322 aa17.07■□□□□ 0.32
PTCH1-215ENST00000547672 LTBP4Q8N2S1 1624 aa17.07■□□□□ 0.32
PTCH1-215ENST00000547672 CHRNA2Q15822 529 aa17.06■□□□□ 0.32
PTCH1-215ENST00000547672 IFNL2Q8IZJ0 200 aa17.06■□□□□ 0.32
PTCH1-215ENST00000547672 CERKQ8TCT0 537 aa17.06■□□□□ 0.32
PTCH1-215ENST00000547672 RGPD5Q99666 1765 aa17.06■□□□□ 0.32
PTCH1-215ENST00000547672 LMO7Q8WWI1 1683 aa17.06■□□□□ 0.32
PTCH1-215ENST00000547672 RNMTO43148 476 aaKnown RBP17.05■□□□□ 0.32
PTCH1-215ENST00000547672 ITPRIPQ8IWB1 547 aa17.05■□□□□ 0.32
PTCH1-215ENST00000547672 CARD10Q9BWT7 1032 aa17.05■□□□□ 0.32
PTCH1-215ENST00000547672 LRRC37A3O60309 1634 aa17.05■□□□□ 0.32
PTCH1-215ENST00000547672 RGPD2P0DJD1 1756 aa17.05■□□□□ 0.32
PTCH1-215ENST00000547672 AHDC1Q5TGY3 1603 aaPredicted RBP17.04■□□□□ 0.32
PTCH1-215ENST00000547672 TOM1L2Q6ZVM7 507 aa17.04■□□□□ 0.32
PTCH1-215ENST00000547672 BTBD11A6QL63 1104 aa17.03■□□□□ 0.32
PTCH1-215ENST00000547672 RLBP1P12271 317 aa17.03■□□□□ 0.32
PTCH1-215ENST00000547672 KDM2BQ8NHM5 1336 aa17.02■□□□□ 0.32
PTCH1-215ENST00000547672 DCAF5Q96JK2 942 aa17.02■□□□□ 0.32
PTCH1-215ENST00000547672 MIS18AQ9NYP9 233 aa17.02■□□□□ 0.32
PTCH1-215ENST00000547672 CACNA1FO60840 1977 aa17.02■□□□□ 0.31
PTCH1-215ENST00000547672 SLC4A2P04920 1241 aa17.01■□□□□ 0.31
PTCH1-215ENST00000547672 MPRIPQ6WCQ1 1025 aa17.01■□□□□ 0.31
PTCH1-215ENST00000547672 TMEM57Q8N5G2 664 aa17.01■□□□□ 0.31
PTCH1-215ENST00000547672 LGR6Q9HBX8 967 aa17.01■□□□□ 0.31
PTCH1-215ENST00000547672 ROBO1Q9Y6N7 1651 aa17.01■□□□□ 0.31
PTCH1-215ENST00000547672 ABCC4O15439 1325 aa17■□□□□ 0.31
PTCH1-215ENST00000547672 PHKG2P15735 406 aa16.99■□□□□ 0.31
PTCH1-215ENST00000547672 INTS3Q68E01 1043 aaKnown RBP16.99■□□□□ 0.31
PTCH1-215ENST00000547672 ZCRB1Q8TBF4 217 aaKnown RBP16.99■□□□□ 0.31
PTCH1-215ENST00000547672 TSHZ2Q9NRE2 1034 aa16.99■□□□□ 0.31
PTCH1-215ENST00000547672 ZBTB40Q9NUA8 1239 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms