RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	LRRC4B	Q9NT99	713 aa		32.16	■■■□□ 2.74
SMARCD1-204	ENST00000547637	HMGB2	P26583	209 aa	Known RBP	32.15	■■■□□ 2.74
SMARCD1-204	ENST00000547637	ZNF827	Q17R98	1081 aa		32.13	■■■□□ 2.73
SMARCD1-204	ENST00000547637	SGIP1	Q9BQI5	828 aa		32.13	■■■□□ 2.73
SMARCD1-204	ENST00000547637	TFCP2L1	Q9NZI6	479 aa		32.13	■■■□□ 2.73
SMARCD1-204	ENST00000547637	POLD1	P28340	1107 aa		32.12	■■■□□ 2.73
SMARCD1-204	ENST00000547637	AKT1S1	Q96B36	256 aa		32.12	■■■□□ 2.73
SMARCD1-204	ENST00000547637	PAPPA	Q13219	1627 aa		32.11	■■■□□ 2.73
SMARCD1-204	ENST00000547637	TAT	P17735	454 aa	Predicted RBP	32.11	■■■□□ 2.73
SMARCD1-204	ENST00000547637	NBPF6	Q5VWK0	638 aa		32.11	■■■□□ 2.73
SMARCD1-204	ENST00000547637	NBPF4	Q96M43	638 aa		32.11	■■■□□ 2.73
SMARCD1-204	ENST00000547637	TIMELESS	Q9UNS1	1208 aa		32.09	■■■□□ 2.73
SMARCD1-204	ENST00000547637	RGPD2	P0DJD1	1756 aa		32.07	■■■□□ 2.72
SMARCD1-204	ENST00000547637	KIF24	Q5T7B8	1368 aa		32.07	■■■□□ 2.72
SMARCD1-204	ENST00000547637	CCNL1	Q9UK58	526 aa	Predicted RBP	32.06	■■■□□ 2.72
SMARCD1-204	ENST00000547637	INSR	P06213	1382 aa		32.06	■■■□□ 2.72
SMARCD1-204	ENST00000547637	USHBP1	Q8N6Y0	703 aa		32.05	■■■□□ 2.72
SMARCD1-204	ENST00000547637	FLT4	P35916	1363 aa		32.05	■■■□□ 2.72
SMARCD1-204	ENST00000547637	MEGF6	O75095	1541 aa		32.05	■■■□□ 2.72
SMARCD1-204	ENST00000547637	MAP3K5	Q99683	1374 aa		32.04	■■■□□ 2.72
SMARCD1-204	ENST00000547637	HSP90AB2P	Q58FF8	381 aa		32.03	■■■□□ 2.72
SMARCD1-204	ENST00000547637	DOT1L	Q8TEK3	1739 aa		32.03	■■■□□ 2.72
SMARCD1-204	ENST00000547637	PNPLA7	Q6ZV29	1317 aa		32.01	■■■□□ 2.72
SMARCD1-204	ENST00000547637	PCDH11X	Q9BZA7	1347 aa		32.01	■■■□□ 2.72
SMARCD1-204	ENST00000547637	PCDH11Y	Q9BZA8	1340 aa		32.01	■■■□□ 2.72
SMARCD1-204	ENST00000547637	QSER1	Q2KHR3	1735 aa		32	■■■□□ 2.71
SMARCD1-204	ENST00000547637	KCNQ4	P56696	695 aa		32	■■■□□ 2.71
SMARCD1-204	ENST00000547637	KLHL34	Q8N239	644 aa		32	■■■□□ 2.71
SMARCD1-204	ENST00000547637	KIF20B	Q96Q89	1820 aa		32	■■■□□ 2.71
SMARCD1-204	ENST00000547637	GPR162	Q16538	588 aa		31.99	■■■□□ 2.71
SMARCD1-204	ENST00000547637	MSH5	O43196	834 aa		31.98	■■■□□ 2.71
SMARCD1-204	ENST00000547637	NSD2	O96028	1365 aa		31.97	■■■□□ 2.71
SMARCD1-204	ENST00000547637	LY75	O60449	1722 aa		31.96	■■■□□ 2.71
SMARCD1-204	ENST00000547637	SHANK3	Q9BYB0	1731 aa		31.95	■■■□□ 2.71
SMARCD1-204	ENST00000547637	PPM1G	O15355	546 aa	Predicted RBP	31.95	■■■□□ 2.71
SMARCD1-204	ENST00000547637	NSD3	Q9BZ95	1437 aa		31.94	■■■□□ 2.7
SMARCD1-204	ENST00000547637	CARD14	Q9BXL6	1004 aa		31.94	■■■□□ 2.7
SMARCD1-204	ENST00000547637	CHD4	Q14839	1912 aa		31.94	■■■□□ 2.7
SMARCD1-204	ENST00000547637	MPRIP	Q6WCQ1	1025 aa		31.92	■■■□□ 2.7
SMARCD1-204	ENST00000547637	ZNF784	Q8NCA9	323 aa	Predicted RBP	31.92	■■■□□ 2.7
SMARCD1-204	ENST00000547637	CLSPN	Q9HAW4	1339 aa		31.92	■■■□□ 2.7
SMARCD1-204	ENST00000547637	FLAD1	Q8NFF5	587 aa		31.91	■■■□□ 2.7
SMARCD1-204	ENST00000547637	SMARCC1	Q92922	1105 aa	Predicted RBP	31.91	■■■□□ 2.7
SMARCD1-204	ENST00000547637	SPG7	Q9UQ90	795 aa		31.9	■■■□□ 2.7
SMARCD1-204	ENST00000547637	EMILIN1	Q9Y6C2	1016 aa		31.9	■■■□□ 2.7
SMARCD1-204	ENST00000547637	PELP1	Q8IZL8	1130 aa	Known RBP	31.88	■■■□□ 2.69
SMARCD1-204	ENST00000547637	PALLD	Q8WX93	1383 aa		31.86	■■■□□ 2.69
SMARCD1-204	ENST00000547637	WASHC2A	Q641Q2	1341 aa		31.86	■■■□□ 2.69
SMARCD1-204	ENST00000547637	COL23A1	Q86Y22	540 aa	Predicted RBP	31.86	■■■□□ 2.69
SMARCD1-204	ENST00000547637	POLR3GL	Q9BT43	218 aa		31.86	■■■□□ 2.69
SMARCD1-204	ENST00000547637	CYP27B1	O15528	508 aa		31.85	■■■□□ 2.69
SMARCD1-204	ENST00000547637	TUBGCP6	Q96RT7	1819 aa		31.84	■■■□□ 2.69
SMARCD1-204	ENST00000547637	PCGF6	Q9BYE7	350 aa		31.84	■■■□□ 2.69
SMARCD1-204	ENST00000547637	COL24A1	Q17RW2	1714 aa		31.83	■■■□□ 2.69
SMARCD1-204	ENST00000547637	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.81	■■■□□ 2.68	7e-6	■■□□□ 12.8
SMARCD1-204	ENST00000547637	NKX1-1	Q15270	411 aa	Predicted RBP	31.8	■■■□□ 2.68
SMARCD1-204	ENST00000547637	AK7	Q96M32	723 aa		31.8	■■■□□ 2.68
SMARCD1-204	ENST00000547637	GRIN3B	O60391	1043 aa		31.79	■■■□□ 2.68
SMARCD1-204	ENST00000547637	MAP2	P11137	1827 aa	Known RBP	31.79	■■■□□ 2.68
SMARCD1-204	ENST00000547637	EYA1	Q99502	592 aa		31.78	■■■□□ 2.68
SMARCD1-204	ENST00000547637	C5	P01031	1676 aa		31.77	■■■□□ 2.68
SMARCD1-204	ENST00000547637	IFNL2	Q8IZJ0	200 aa		31.76	■■■□□ 2.67
SMARCD1-204	ENST00000547637	PIGB	Q92521	554 aa		31.76	■■■□□ 2.67
SMARCD1-204	ENST00000547637	TMOD3	Q9NYL9	352 aa		31.76	■■■□□ 2.67
SMARCD1-204	ENST00000547637	POLK	Q9UBT6	870 aa		31.76	■■■□□ 2.67
SMARCD1-204	ENST00000547637	EIF4G2	P78344	907 aa	Known RBP eCLIP	31.75	■■■□□ 2.67
SMARCD1-204	ENST00000547637	MSL1	Q68DK7	614 aa		31.75	■■■□□ 2.67
SMARCD1-204	ENST00000547637	NLGN2	Q8NFZ4	835 aa		31.75	■■■□□ 2.67
SMARCD1-204	ENST00000547637	ITGB4	P16144	1822 aa		31.74	■■■□□ 2.67
SMARCD1-204	ENST00000547637	PKD1L3	Q7Z443	1732 aa		31.74	■■■□□ 2.67
SMARCD1-204	ENST00000547637	NCAPD2	Q15021	1401 aa		31.74	■■■□□ 2.67
SMARCD1-204	ENST00000547637	UTRN	P46939	3433 aa		31.73	■■■□□ 2.67
SMARCD1-204	ENST00000547637	TNNT2	P45379	298 aa	Predicted RBP	31.72	■■■□□ 2.67
SMARCD1-204	ENST00000547637	CD2AP	Q9Y5K6	639 aa		31.72	■■■□□ 2.67
SMARCD1-204	ENST00000547637	TAF1L	Q8IZX4	1826 aa		31.71	■■■□□ 2.67
SMARCD1-204	ENST00000547637	ANKRD26	Q9UPS8	1709 aa		31.7	■■■□□ 2.67
SMARCD1-204	ENST00000547637	LOC102724428	A0A0B4J2F2	783 aa		31.69	■■■□□ 2.66
SMARCD1-204	ENST00000547637	SIK1	P57059	783 aa		31.69	■■■□□ 2.66
SMARCD1-204	ENST00000547637	PHKG2	P15735	406 aa		31.68	■■■□□ 2.66
SMARCD1-204	ENST00000547637	PHF14	O94880	888 aa		31.67	■■■□□ 2.66
SMARCD1-204	ENST00000547637	EIF4A2	Q14240	407 aa	Known RBP	31.67	■■■□□ 2.66
SMARCD1-204	ENST00000547637	C4B	P0C0L5	1744 aa		31.66	■■■□□ 2.66
SMARCD1-204	ENST00000547637	SSFA2	P28290	1259 aa		31.66	■■■□□ 2.66
SMARCD1-204	ENST00000547637	PLEKHG2	Q9H7P9	1386 aa		31.66	■■■□□ 2.66
SMARCD1-204	ENST00000547637	TOGARAM1	Q9Y4F4	1720 aa		31.66	■■■□□ 2.66
SMARCD1-204	ENST00000547637	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	31.65	■■■□□ 2.66
SMARCD1-204	ENST00000547637	HSP90AB1	P08238	724 aa	Known RBP	31.65	■■■□□ 2.66
SMARCD1-204	ENST00000547637	ATP6V1A	P38606	617 aa		31.64	■■■□□ 2.66
SMARCD1-204	ENST00000547637	C1QTNF8	P60827	252 aa		31.64	■■■□□ 2.66
SMARCD1-204	ENST00000547637	PANK3	Q9H999	370 aa		31.64	■■■□□ 2.66
SMARCD1-204	ENST00000547637	GIGYF1	O75420	1035 aa	Predicted RBP	31.62	■■■□□ 2.65
SMARCD1-204	ENST00000547637	HSPA5	P11021	654 aa	Known RBP	31.62	■■■□□ 2.65
SMARCD1-204	ENST00000547637	ASAP1	Q9ULH1	1129 aa		31.62	■■■□□ 2.65
SMARCD1-204	ENST00000547637	YBX3	P16989	372 aa	Known RBP eCLIP	31.61	■■■□□ 2.65
SMARCD1-204	ENST00000547637	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.61	■■■□□ 2.65
SMARCD1-204	ENST00000547637	ERVV-2	B6SEH9	535 aa		31.59	■■■□□ 2.65
SMARCD1-204	ENST00000547637	LINC00116	Q8NCU8	138 aa		31.59	■■■□□ 2.65
SMARCD1-204	ENST00000547637	GNPAT	O15228	680 aa		31.58	■■■□□ 2.65
SMARCD1-204	ENST00000547637	AMOT	Q4VCS5	1084 aa		31.58	■■■□□ 2.65
SMARCD1-204	ENST00000547637	MORC1	Q86VD1	984 aa		31.58	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 477.7 ms