RNA–Protein interactions for RNA: ENST00000547615.1

PTCH1-214, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 525 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-214ENST00000547615 SYTL4Q96C24 671 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-214ENST00000547615 GPBP1L1Q9HC44 474 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-214ENST00000547615 CD2APQ9Y5K6 639 aa11.68□□□□□ -0.54
PTCH1-214ENST00000547615 C5P01031 1676 aa11.68□□□□□ -0.54
PTCH1-214ENST00000547615 DDX54Q8TDD1 881 aaKnown RBP11.67□□□□□ -0.54
PTCH1-214ENST00000547615 L3MBTL2Q969R5 705 aa11.67□□□□□ -0.54
PTCH1-214ENST00000547615 CCNL1Q9UK58 526 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-214ENST00000547615 CD163L1Q9NR16 1453 aa11.66□□□□□ -0.54
PTCH1-214ENST00000547615 TMC1Q8TDI8 760 aa11.66□□□□□ -0.54
PTCH1-214ENST00000547615 ATP10DQ9P241 1426 aa11.66□□□□□ -0.54
PTCH1-214ENST00000547615 MSH5O43196 834 aa11.65□□□□□ -0.54
PTCH1-214ENST00000547615 NME9Q86XW9 330 aa11.65□□□□□ -0.54
PTCH1-214ENST00000547615 ZCRB1Q8TBF4 217 aaKnown RBP11.65□□□□□ -0.54
PTCH1-214ENST00000547615 COG3Q96JB2 828 aa11.65□□□□□ -0.54
PTCH1-214ENST00000547615 HSPA6P17066 643 aa11.64□□□□□ -0.55
PTCH1-214ENST00000547615 A0A1W2PP64 1363 aa11.64□□□□□ -0.55
PTCH1-214ENST00000547615 NSD2O96028 1365 aa11.64□□□□□ -0.55
PTCH1-214ENST00000547615 KIF24Q5T7B8 1368 aa11.64□□□□□ -0.55
PTCH1-214ENST00000547615 PCDH11XQ9BZA7 1347 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 PCDH11YQ9BZA8 1340 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 AMPHP49418 695 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 PRIM1P49642 420 aaKnown RBP11.63□□□□□ -0.55
PTCH1-214ENST00000547615 NLGN2Q8NFZ4 835 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 RAPGEF4Q8WZA2 1011 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 ADCY9O60503 1353 aa11.63□□□□□ -0.55
PTCH1-214ENST00000547615 SMARCC1Q92922 1105 aaPredicted RBP11.62□□□□□ -0.55
PTCH1-214ENST00000547615 CARD11Q9BXL7 1154 aa11.62□□□□□ -0.55
PTCH1-214ENST00000547615 TAF1LQ8IZX4 1826 aa11.61□□□□□ -0.55
PTCH1-214ENST00000547615 YBX3P16989 372 aaKnown RBP eCLIP11.61□□□□□ -0.55
PTCH1-214ENST00000547615 TATP17735 454 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-214ENST00000547615 HOXC9P31274 260 aa11.6□□□□□ -0.55
PTCH1-214ENST00000547615 COL23A1Q86Y22 540 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-214ENST00000547615 C4BP0C0L5 1744 aa11.6□□□□□ -0.55
PTCH1-214ENST00000547615 CICQ96RK0 1608 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-214ENST00000547615 MEGF6O75095 1541 aa11.6□□□□□ -0.55
PTCH1-214ENST00000547615 PALLDQ8WX93 1383 aa11.59□□□□□ -0.55
PTCH1-214ENST00000547615 PLEKHG2Q9H7P9 1386 aa11.59□□□□□ -0.55
PTCH1-214ENST00000547615 LTV1Q96GA3 475 aaPredicted RBP11.59□□□□□ -0.55
PTCH1-214ENST00000547615 AK7Q96M32 723 aa11.59□□□□□ -0.55
PTCH1-214ENST00000547615 MAP3K19Q56UN5 1328 aa11.59□□□□□ -0.55
PTCH1-214ENST00000547615 SSFA2P28290 1259 aa11.58□□□□□ -0.56
PTCH1-214ENST00000547615 APLP1P51693 650 aa11.58□□□□□ -0.56
PTCH1-214ENST00000547615 SLC12A5Q9H2X9 1139 aa11.58□□□□□ -0.56
PTCH1-214ENST00000547615 INSRP06213 1382 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 FLT4P35916 1363 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 UBR3Q6ZT12 1888 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 PKD1L3Q7Z443 1732 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 GOLGB1Q14789 3259 aaKnown RBP11.56□□□□□ -0.56
PTCH1-214ENST00000547615 RGPD2P0DJD1 1756 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 IGSF1Q8N6C5 1336 aa11.56□□□□□ -0.56
PTCH1-214ENST00000547615 TONSLQ96HA7 1378 aa11.55□□□□□ -0.56
PTCH1-214ENST00000547615 KIF20BQ96Q89 1820 aa11.54□□□□□ -0.56
PTCH1-214ENST00000547615 KCNQ4P56696 695 aa11.54□□□□□ -0.56
PTCH1-214ENST00000547615 CDCA8Q53HL2 280 aa11.54□□□□□ -0.56
PTCH1-214ENST00000547615 MSL1Q68DK7 614 aa11.54□□□□□ -0.56
PTCH1-214ENST00000547615 ITGB4P16144 1822 aa11.53□□□□□ -0.56
PTCH1-214ENST00000547615 KIF13BQ9NQT8 1826 aa11.53□□□□□ -0.56
PTCH1-214ENST00000547615 TOMM70O94826 608 aa11.53□□□□□ -0.56
PTCH1-214ENST00000547615 NEUROD1Q13562 356 aa11.53□□□□□ -0.56
PTCH1-214ENST00000547615 SPG7Q9UQ90 795 aa11.53□□□□□ -0.56
PTCH1-214ENST00000547615 ZNF831Q5JPB2 1677 aa11.52□□□□□ -0.56
PTCH1-214ENST00000547615 TOGARAM1Q9Y4F4 1720 aa11.52□□□□□ -0.56
PTCH1-214ENST00000547615 TGFB2P61812 414 aa11.52□□□□□ -0.57
PTCH1-214ENST00000547615 MPRIPQ6WCQ1 1025 aa11.52□□□□□ -0.57
PTCH1-214ENST00000547615 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.51□□□□□ -0.57
PTCH1-214ENST00000547615 NBPF6Q5VWK0 638 aa11.51□□□□□ -0.57
PTCH1-214ENST00000547615 ZNF526Q8TF50 670 aaPredicted RBP11.51□□□□□ -0.57
PTCH1-214ENST00000547615 NBPF4Q96M43 638 aa11.51□□□□□ -0.57
PTCH1-214ENST00000547615 SIN3AQ96ST3 1273 aa11.51□□□□□ -0.57
PTCH1-214ENST00000547615 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.51□□□□□ -0.57
PTCH1-214ENST00000547615 CEP350Q5VT06 3117 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 KIF3CO14782 793 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 ADRA2BP18089 450 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 TMF1P82094 1093 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 C16orf71Q8IYS4 520 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-214ENST00000547615 TMOD3Q9NYL9 352 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 NCAPD2Q15021 1401 aa11.5□□□□□ -0.57
PTCH1-214ENST00000547615 WDR90Q96KV7 1748 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 ANKRD26Q9UPS8 1709 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 MAP2P11137 1827 aaKnown RBP11.49□□□□□ -0.57
PTCH1-214ENST00000547615 LOC102724428A0A0B4J2F2 783 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 SIK1P57059 783 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 NKX1-1Q15270 411 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-214ENST00000547615 NLGN1Q8N2Q7 840 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 CCDC87Q9NVE4 849 aa11.49□□□□□ -0.57
PTCH1-214ENST00000547615 PHF14O94880 888 aa11.48□□□□□ -0.57
PTCH1-214ENST00000547615 RRS1Q15050 365 aaKnown RBP11.48□□□□□ -0.57
PTCH1-214ENST00000547615 RBM46Q8TBY0 533 aaKnown RBP11.48□□□□□ -0.57
PTCH1-214ENST00000547615 C10orf71Q711Q0 1435 aa11.48□□□□□ -0.57
PTCH1-214ENST00000547615 PXDNLA1KZ92 1463 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 KDM2BQ8NHM5 1336 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 FYB1O15117 783 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 GNPATO15228 680 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 FSTL1Q12841 308 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 IFNL2Q8IZJ0 200 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 TESK2Q96S53 571 aa11.47□□□□□ -0.57
PTCH1-214ENST00000547615 RTCBQ9Y3I0 505 aaKnown RBP11.47□□□□□ -0.57
PTCH1-214ENST00000547615 ARFGEF1Q9Y6D6 1849 aa11.46□□□□□ -0.57
PTCH1-214ENST00000547615 TNRC6CQ9HCJ0 1690 aaKnown RBP11.46□□□□□ -0.57
PTCH1-214ENST00000547615 ZC3H4Q9UPT8 1303 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms