RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 EMILIN1Q9Y6C2 1016 aa31.43■■■□□ 2.62
CHD4-214ENST00000545942 SLC15A2Q16348 729 aa31.42■■■□□ 2.62
CHD4-214ENST00000545942 BTAF1O14981 1849 aa31.4■■■□□ 2.62
CHD4-214ENST00000545942 TATP17735 454 aaPredicted RBP31.38■■■□□ 2.61
CHD4-214ENST00000545942 PPM1GO15355 546 aaPredicted RBP31.37■■■□□ 2.61
CHD4-214ENST00000545942 SYTL4Q96C24 671 aaPredicted RBP31.37■■■□□ 2.61
CHD4-214ENST00000545942 PDGFDQ9GZP0 370 aaPredicted RBP31.37■■■□□ 2.61
CHD4-214ENST00000545942 PPP1R1BQ9UD71 204 aaPredicted RBP31.37■■■□□ 2.61
CHD4-214ENST00000545942 PRIM1P49642 420 aaKnown RBP31.36■■■□□ 2.61
CHD4-214ENST00000545942 CASZ1Q86V15 1759 aa31.36■■■□□ 2.61
CHD4-214ENST00000545942 SHANK3Q9BYB0 1731 aa31.34■■■□□ 2.61
CHD4-214ENST00000545942 WASHC2AQ641Q2 1341 aa31.33■■■□□ 2.61
CHD4-214ENST00000545942 LRRC4BQ9NT99 713 aa31.32■■■□□ 2.6
CHD4-214ENST00000545942 KAT6BQ8WYB5 2073 aa31.32■■■□□ 2.6
CHD4-214ENST00000545942 ZBTB7AO95365 584 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 SLC27A3Q5K4L6 730 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 PANK3Q9H999 370 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 PAPPAQ13219 1627 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 PCDH11XQ9BZA7 1347 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 PCDH11YQ9BZA8 1340 aa31.31■■■□□ 2.6
CHD4-214ENST00000545942 POLKQ9UBT6 870 aa31.3■■■□□ 2.6
CHD4-214ENST00000545942 DOT1LQ8TEK3 1739 aa31.3■■■□□ 2.6
CHD4-214ENST00000545942 ANKRD26Q9UPS8 1709 aa31.3■■■□□ 2.6
CHD4-214ENST00000545942 NSD2O96028 1365 aa31.3■■■□□ 2.6
CHD4-214ENST00000545942 NCAPD2Q15021 1401 aa31.27■■■□□ 2.6
CHD4-214ENST00000545942 TNNT2P45379 298 aaPredicted RBP31.26■■■□□ 2.6
CHD4-214ENST00000545942 ZNF827Q17R98 1081 aa31.25■■■□□ 2.59
CHD4-214ENST00000545942 ATF5Q9Y2D1 282 aaPredicted RBP31.25■■■□□ 2.59
CHD4-214ENST00000545942 MTFR1LQ9H019 292 aa31.24■■■□□ 2.59
CHD4-214ENST00000545942 PTGER2P43116 358 aa31.24■■■□□ 2.59
CHD4-214ENST00000545942 AKT1S1Q96B36 256 aa31.23■■■□□ 2.59
CHD4-214ENST00000545942 EYA1Q99502 592 aa31.23■■■□□ 2.59
CHD4-214ENST00000545942 MAP2P11137 1827 aaKnown RBP31.22■■■□□ 2.59
CHD4-214ENST00000545942 CYP27B1O15528 508 aa31.22■■■□□ 2.59
CHD4-214ENST00000545942 KCNQ4P56696 695 aa31.2■■■□□ 2.58
CHD4-214ENST00000545942 SPG7Q9UQ90 795 aa31.19■■■□□ 2.58
CHD4-214ENST00000545942 EIF4A2Q14240 407 aaKnown RBP31.18■■■□□ 2.58
CHD4-214ENST00000545942 CCNL1Q9UK58 526 aaPredicted RBP31.18■■■□□ 2.58
CHD4-214ENST00000545942 PKD1L3Q7Z443 1732 aa31.17■■■□□ 2.58
CHD4-214ENST00000545942 LY75O60449 1722 aa31.16■■■□□ 2.58
CHD4-214ENST00000545942 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.16■■■□□ 2.586e-9■■■□□ 15
CHD4-214ENST00000545942 TFCP2L1Q9NZI6 479 aa31.16■■■□□ 2.58
CHD4-214ENST00000545942 SGIP1Q9BQI5 828 aa31.15■■■□□ 2.58
CHD4-214ENST00000545942 KNSTRNQ9Y448 316 aa31.15■■■□□ 2.58
CHD4-214ENST00000545942 MPRIPQ6WCQ1 1025 aa31.14■■■□□ 2.58
CHD4-214ENST00000545942 MORC1Q86VD1 984 aa31.14■■■□□ 2.58
CHD4-214ENST00000545942 NKX1-1Q15270 411 aaPredicted RBP31.13■■■□□ 2.57
CHD4-214ENST00000545942 PNPLA7Q6ZV29 1317 aa31.12■■■□□ 2.57
CHD4-214ENST00000545942 DCAF8L1A6NGE4 600 aa31.12■■■□□ 2.57
CHD4-214ENST00000545942 KIF7Q2M1P5 1343 aa31.11■■■□□ 2.57
CHD4-214ENST00000545942 SLC16A10Q8TF71 515 aa31.11■■■□□ 2.57
CHD4-214ENST00000545942 PALLDQ8WX93 1383 aa31.1■■■□□ 2.57
CHD4-214ENST00000545942 PLEKHG2Q9H7P9 1386 aa31.09■■■□□ 2.57
CHD4-214ENST00000545942 IGSF1Q8N6C5 1336 aa31.08■■■□□ 2.57
CHD4-214ENST00000545942 FHDC1Q9C0D6 1143 aaPredicted RBP31.08■■■□□ 2.57
CHD4-214ENST00000545942 QSER1Q2KHR3 1735 aa31.07■■■□□ 2.56
CHD4-214ENST00000545942 HMGB2P26583 209 aaKnown RBP31.07■■■□□ 2.56
CHD4-214ENST00000545942 IFNL2Q8IZJ0 200 aa31.07■■■□□ 2.56
CHD4-214ENST00000545942 SMARCC1Q92922 1105 aaPredicted RBP31.07■■■□□ 2.56
CHD4-214ENST00000545942 ARXQ96QS3 562 aa31.07■■■□□ 2.56
CHD4-214ENST00000545942 TOGARAM1Q9Y4F4 1720 aa31.07■■■□□ 2.56
CHD4-214ENST00000545942 PHKG2P15735 406 aa31.05■■■□□ 2.56
CHD4-214ENST00000545942 PIGBQ92521 554 aa31.05■■■□□ 2.56
CHD4-214ENST00000545942 SYT17Q9BSW7 474 aa31.05■■■□□ 2.56
CHD4-214ENST00000545942 AMER1Q5JTC6 1135 aaPredicted RBP31.04■■■□□ 2.56
CHD4-214ENST00000545942 TUBGCP6Q96RT7 1819 aa31■■■□□ 2.55
CHD4-214ENST00000545942 POLD1P28340 1107 aa31■■■□□ 2.55
CHD4-214ENST00000545942 TMOD3Q9NYL9 352 aa31■■■□□ 2.55
CHD4-214ENST00000545942 ITGB4P16144 1822 aa31■■■□□ 2.55
CHD4-214ENST00000545942 MAP3K5Q99683 1374 aa30.98■■■□□ 2.55
CHD4-214ENST00000545942 C5P01031 1676 aa30.98■■■□□ 2.55
CHD4-214ENST00000545942 MSH5O43196 834 aa30.98■■■□□ 2.55
CHD4-214ENST00000545942 PLEKHO1Q53GL0 409 aaPredicted RBP30.97■■■□□ 2.55
CHD4-214ENST00000545942 COL23A1Q86Y22 540 aaPredicted RBP30.97■■■□□ 2.55
CHD4-214ENST00000545942 PER1O15534 1290 aaPredicted RBP30.95■■■□□ 2.54
CHD4-214ENST00000545942 YY1P25490 414 aa30.95■■■□□ 2.54
CHD4-214ENST00000545942 AMOTQ4VCS5 1084 aa30.95■■■□□ 2.54
CHD4-214ENST00000545942 HSP90AB1P08238 724 aaKnown RBP30.94■■■□□ 2.54
CHD4-214ENST00000545942 FLAD1Q8NFF5 587 aa30.94■■■□□ 2.54
CHD4-214ENST00000545942 LOC102724428A0A0B4J2F2 783 aa30.93■■■□□ 2.54
CHD4-214ENST00000545942 SIK1P57059 783 aa30.93■■■□□ 2.54
CHD4-214ENST00000545942 AEBP1Q8IUX7 1158 aa30.93■■■□□ 2.54
CHD4-214ENST00000545942 DCAF5Q96JK2 942 aa30.93■■■□□ 2.54
CHD4-214ENST00000545942 ASAP1Q9ULH1 1129 aa30.93■■■□□ 2.54
CHD4-214ENST00000545942 COL24A1Q17RW2 1714 aa30.92■■■□□ 2.54
CHD4-214ENST00000545942 IL13P35225 146 aa30.92■■■□□ 2.54
CHD4-214ENST00000545942 AK7Q96M32 723 aa30.92■■■□□ 2.54
CHD4-214ENST00000545942 ERVV-2B6SEH9 535 aa30.91■■■□□ 2.54
CHD4-214ENST00000545942 SULT6B1Q6IMI4 303 aa30.91■■■□□ 2.54
CHD4-214ENST00000545942 ZNF530Q6P9A1 599 aaPredicted RBP30.91■■■□□ 2.54
CHD4-214ENST00000545942 TAF1LQ8IZX4 1826 aa30.9■■■□□ 2.54
CHD4-214ENST00000545942 KDRP35968 1356 aa30.89■■■□□ 2.54
CHD4-214ENST00000545942 C4BP0C0L5 1744 aa30.89■■■□□ 2.54
CHD4-214ENST00000545942 MTHFSP49914 203 aa30.89■■■□□ 2.54
CHD4-214ENST00000545942 CC2D1BQ5T0F9 858 aaKnown RBP30.88■■■□□ 2.53
CHD4-214ENST00000545942 KLHL34Q8N239 644 aa30.88■■■□□ 2.53
CHD4-214ENST00000545942 ATG3Q9NT62 314 aa30.88■■■□□ 2.53
CHD4-214ENST00000545942 C1orf141Q5JVX7 400 aa30.86■■■□□ 2.53
CHD4-214ENST00000545942 LINC00116Q8NCU8 138 aa30.86■■■□□ 2.53
CHD4-214ENST00000545942 ATP6V1AP38606 617 aa30.85■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms