RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 CCDC102BQ68D86 513 aa8.18□□□□□ -1.1
USP28-211ENST00000544272 KCTD15Q96SI1 283 aaPredicted RBP8.18□□□□□ -1.1
USP28-211ENST00000544272 PCDHB11Q9Y5F2 797 aa8.18□□□□□ -1.1
USP28-211ENST00000544272 ZBTB24O43167 697 aaPredicted RBP8.17□□□□□ -1.1
USP28-211ENST00000544272 SEC13P55735 322 aa8.17□□□□□ -1.1
USP28-211ENST00000544272 HCSTQ9UBK5 93 aa8.17□□□□□ -1.1
USP28-211ENST00000544272 RPIAP49247 311 aa8.16□□□□□ -1.1
USP28-211ENST00000544272 OCLNQ16625 522 aa8.16□□□□□ -1.1
USP28-211ENST00000544272 TPCN2Q8NHX9 752 aa8.16□□□□□ -1.1
USP28-211ENST00000544272 RB1CC1Q8TDY2 1594 aa8.16□□□□□ -1.1
USP28-211ENST00000544272 M0R2N6 131 aa8.15□□□□□ -1.1
USP28-211ENST00000544272 GGCXP38435 758 aa8.15□□□□□ -1.1
USP28-211ENST00000544272 INTS6LQ5JSJ4 861 aaKnown RBP8.15□□□□□ -1.1
USP28-211ENST00000544272 SFI1A8K8P3 1242 aa8.14□□□□□ -1.11
USP28-211ENST00000544272 FOXD4L5Q5VV16 416 aaPredicted RBP8.14□□□□□ -1.11
USP28-211ENST00000544272 TAS1R3Q7RTX0 852 aa8.14□□□□□ -1.11
USP28-211ENST00000544272 FOXD4L4Q8WXT5 416 aaPredicted RBP8.14□□□□□ -1.11
USP28-211ENST00000544272 CDK15Q96Q40 435 aa8.14□□□□□ -1.11
USP28-211ENST00000544272 CXXC1Q9P0U4 656 aaPredicted RBP8.14□□□□□ -1.11
USP28-211ENST00000544272 VASH1Q7L8A9 365 aaPredicted RBP8.13□□□□□ -1.11
USP28-211ENST00000544272 MPNDQ8N594 471 aa8.13□□□□□ -1.11
USP28-211ENST00000544272 SOWAHDA6NJG2 315 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 ERVH48-1M5A8F1 160 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 PRMT3O60678 531 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 SCTRP47872 440 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 ERVK-9P63128 1117 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 PPP1R18Q6NYC8 613 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.12□□□□□ -1.11
USP28-211ENST00000544272 AMOTL2Q9Y2J4 779 aa8.12□□□□□ -1.11
USP28-211ENST00000544272 RBM19Q9Y4C8 960 aaKnown RBP8.12□□□□□ -1.11
USP28-211ENST00000544272 MYCP01106 439 aaPredicted RBP8.11□□□□□ -1.11
USP28-211ENST00000544272 WEE1P30291 646 aa8.11□□□□□ -1.11
USP28-211ENST00000544272 SCNN1AP37088 669 aa8.11□□□□□ -1.11
USP28-211ENST00000544272 SERPINB4P48594 390 aa8.11□□□□□ -1.11
USP28-211ENST00000544272 PSME1Q06323 249 aa8.11□□□□□ -1.11
USP28-211ENST00000544272 RNF166Q96A37 237 aaPredicted RBP8.11□□□□□ -1.11
USP28-211ENST00000544272 GRM5P41594 1212 aa8.1□□□□□ -1.11
USP28-211ENST00000544272 RAB15P59190 212 aa8.1□□□□□ -1.11
USP28-211ENST00000544272 RC3H1Q5TC82 1133 aaKnown RBP8.1□□□□□ -1.11
USP28-211ENST00000544272 EHBP1Q8NDI1 1231 aa8.1□□□□□ -1.11
USP28-211ENST00000544272 PRIMPOLQ96LW4 560 aa8.1□□□□□ -1.11
USP28-211ENST00000544272 TMEM229AB2RXF0 380 aa8.09□□□□□ -1.11
USP28-211ENST00000544272 WASLO00401 505 aaPredicted RBP8.09□□□□□ -1.11
USP28-211ENST00000544272 SIAH2O43255 324 aa8.09□□□□□ -1.11
USP28-211ENST00000544272 CC2D2BQ6DHV5 1058 aa8.09□□□□□ -1.11
USP28-211ENST00000544272 EMID1Q96A84 441 aaPredicted RBP8.09□□□□□ -1.11
USP28-211ENST00000544272 OSBPL3Q9H4L5 887 aa8.09□□□□□ -1.11
USP28-211ENST00000544272 EGFL7Q9UHF1 273 aa8.09□□□□□ -1.11
USP28-211ENST00000544272 CD2BP2O95400 341 aaKnown RBP8.08□□□□□ -1.12
USP28-211ENST00000544272 SCNN1DP51172 638 aa8.08□□□□□ -1.12
USP28-211ENST00000544272 LIAT1Q6ZQX7 453 aa8.08□□□□□ -1.12
USP28-211ENST00000544272 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP28-211ENST00000544272 TSEN2Q8NCE0 465 aaKnown RBP8.08□□□□□ -1.12
USP28-211ENST00000544272 ZNF358Q9NW07 568 aa8.08□□□□□ -1.12
USP28-211ENST00000544272 FSHRP23945 695 aa8.07□□□□□ -1.12
USP28-211ENST00000544272 DHX9Q08211 1270 aaKnown RBP8.07□□□□□ -1.12
USP28-211ENST00000544272 DNAJC14Q6Y2X3 702 aaPredicted RBP8.07□□□□□ -1.12
USP28-211ENST00000544272 ZNF428Q96B54 188 aa8.07□□□□□ -1.12
USP28-211ENST00000544272 HINFPQ9BQA5 517 aa8.07□□□□□ -1.12
USP28-211ENST00000544272 NACADO15069 1562 aa8.06□□□□□ -1.12
USP28-211ENST00000544272 SPNS2Q8IVW8 549 aa8.06□□□□□ -1.12
USP28-211ENST00000544272 TRIM52Q96A61 297 aa8.06□□□□□ -1.12
USP28-211ENST00000544272 TMPRSS4Q9NRS4 437 aa8.06□□□□□ -1.12
USP28-211ENST00000544272 LILRA1O75019 489 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 LGR5O75473 907 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 ADH1CP00326 375 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 EPHA4P54764 986 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 FKBP5Q13451 457 aaPredicted RBP8.05□□□□□ -1.12
USP28-211ENST00000544272 ARID5BQ14865 1188 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 NOM1Q5C9Z4 860 aaKnown RBP8.05□□□□□ -1.12
USP28-211ENST00000544272 ZNF784Q8NCA9 323 aaPredicted RBP8.05□□□□□ -1.12
USP28-211ENST00000544272 COL26A1Q96A83 441 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 TLL2Q9Y6L7 1015 aa8.05□□□□□ -1.12
USP28-211ENST00000544272 WNT7AO00755 349 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 ICMTO60725 284 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 ERCC3P19447 782 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 IGFBP4P22692 258 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 GDF10P55107 478 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 NR5A1Q13285 461 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 SLC4A9Q96Q91 983 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 CYLDQ9NQC7 956 aa8.04□□□□□ -1.12
USP28-211ENST00000544272 BACH1O14867 736 aa8.03□□□□□ -1.12
USP28-211ENST00000544272 PTCD1O75127 700 aaKnown RBP8.03□□□□□ -1.12
USP28-211ENST00000544272 STAU1O95793 577 aaKnown RBP8.03□□□□□ -1.12
USP28-211ENST00000544272 INHAP05111 366 aa8.03□□□□□ -1.12
USP28-211ENST00000544272 RBM25P49756 843 aaKnown RBP8.03□□□□□ -1.12
USP28-211ENST00000544272 PPP1R26Q5T8A7 1209 aaPredicted RBP8.03□□□□□ -1.12
USP28-211ENST00000544272 IFFO2Q5TF58 517 aa8.03□□□□□ -1.12
USP28-211ENST00000544272 CCDC116Q8IYX3 515 aa8.03□□□□□ -1.12
USP28-211ENST00000544272 PURBQ96QR8 312 aaKnown RBP8.03□□□□□ -1.12
USP28-211ENST00000544272 SEPT3Q9UH03 358 aa8.03□□□□□ -1.12
USP28-211ENST00000544272 FOXO3O43524 673 aa8.02□□□□□ -1.13
USP28-211ENST00000544272 MYT1Q01538 1121 aa8.02□□□□□ -1.13
USP28-211ENST00000544272 MMRN1Q13201 1228 aa8.02□□□□□ -1.13
USP28-211ENST00000544272 ECM1Q16610 540 aa8.02□□□□□ -1.13
USP28-211ENST00000544272 ESF1Q9H501 851 aaKnown RBP8.02□□□□□ -1.13
USP28-211ENST00000544272 ETNK1Q9HBU6 452 aa8.02□□□□□ -1.13
USP28-211ENST00000544272 C21orf2O43822 256 aa8.01□□□□□ -1.13
USP28-211ENST00000544272 GNRH1P01148 92 aa8.01□□□□□ -1.13
USP28-211ENST00000544272 NR3C2P08235 984 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms