RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 PPP1R12BO60237 982 aaPredicted RBP12.19□□□□□ -0.46
PCDH9-204ENST00000544246 UPF3BQ9BZI7 483 aaKnown RBP12.19□□□□□ -0.46
PCDH9-204ENST00000544246 SPA17Q15506 151 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 ZSCAN25Q6NSZ9 544 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 UBXN4Q92575 508 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 NLRP2Q9NX02 1062 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 IBSPP21815 317 aaPredicted RBP12.18□□□□□ -0.46
PCDH9-204ENST00000544246 IFFO1Q0D2I5 559 aa12.18□□□□□ -0.46
PCDH9-204ENST00000544246 SPATA32Q96LK8 384 aa12.18□□□□□ -0.46
PCDH9-204ENST00000544246 CFAP57Q96MR6 1250 aa12.18□□□□□ -0.46
PCDH9-204ENST00000544246 GOPCQ9HD26 462 aa12.18□□□□□ -0.46
PCDH9-204ENST00000544246 UBE4AQ14139 1066 aa12.18□□□□□ -0.46
PCDH9-204ENST00000544246 IMMTQ16891 758 aaKnown RBP12.18□□□□□ -0.46
PCDH9-204ENST00000544246 CASQ1P31415 396 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 BRPF3Q9ULD4 1205 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 CCDC178Q5BJE1 867 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 GRPEL1Q9HAV7 217 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 MAPK8IP2Q13387 824 aaPredicted RBP12.17□□□□□ -0.46
PCDH9-204ENST00000544246 RNF187Q5TA31 235 aaPredicted RBP12.17□□□□□ -0.46
PCDH9-204ENST00000544246 GSTTP1A0A1W2PQM5 241 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 RBM5P52756 815 aaKnown RBP eCLIP12.17□□□□□ -0.46
PCDH9-204ENST00000544246 WASF1Q92558 559 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 NUP62CLQ9H1M0 184 aa12.17□□□□□ -0.46
PCDH9-204ENST00000544246 MIA2Q96PC5 1412 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 LARP1BQ659C4 914 aaKnown RBP12.16□□□□□ -0.46
PCDH9-204ENST00000544246 GCC1Q96CN9 775 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 BCCIPQ9P287 314 aaKnown RBP eCLIP12.16□□□□□ -0.46
PCDH9-204ENST00000544246 CEP131Q9UPN4 1083 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 ANKLE2Q86XL3 938 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 FAM107BQ9H098 131 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 WDR62O43379 1518 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 ERICH3Q5RHP9 1530 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 PLB1Q6P1J6 1458 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 GIGYF2Q6Y7W6 1299 aaKnown RBP12.16□□□□□ -0.46
PCDH9-204ENST00000544246 HOOK3Q86VS8 718 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 TEX14Q8IWB6 1497 aa12.16□□□□□ -0.46
PCDH9-204ENST00000544246 KIF2AO00139 706 aaPredicted RBP12.16□□□□□ -0.46
PCDH9-204ENST00000544246 GNAI2P04899 355 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 LUZP1Q86V48 1076 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 MPNDQ8N594 471 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 RBM42Q9BTD8 480 aaKnown RBP12.15□□□□□ -0.46
PCDH9-204ENST00000544246 ZSCAN12O43309 604 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 FERP16591 822 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 PROSER2Q86WR7 435 aaPredicted RBP12.15□□□□□ -0.46
PCDH9-204ENST00000544246 TSG101Q99816 390 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 COMMD10Q9Y6G5 202 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 IQGAP2Q13576 1575 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 PPP4R3AQ6IN85 833 aa12.15□□□□□ -0.46
PCDH9-204ENST00000544246 LARP1Q6PKG0 1096 aaKnown RBP12.15□□□□□ -0.46
PCDH9-204ENST00000544246 TNIP1Q15025 636 aa12.15□□□□□ -0.47
PCDH9-204ENST00000544246 RRP9O43818 475 aaKnown RBP12.14□□□□□ -0.47
PCDH9-204ENST00000544246 FKBP15Q5T1M5 1219 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 TXNDC2Q86VQ3 553 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 SCAPERQ9BY12 1400 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 K7ELQ4 463 aaPredicted RBP12.14□□□□□ -0.47
PCDH9-204ENST00000544246 KIF5CO60282 957 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 CTNNBL1Q8WYA6 563 aaPredicted RBP12.14□□□□□ -0.47
PCDH9-204ENST00000544246 C6orf163Q5TEZ5 329 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 VPS36Q86VN1 386 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 ZSCAN31Q96LW9 406 aaPredicted RBP12.14□□□□□ -0.47
PCDH9-204ENST00000544246 UBAC1Q9BSL1 405 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 CCDC175P0C221 793 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 FILIP1Q7Z7B0 1213 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 GAS2L2Q8NHY3 880 aa12.14□□□□□ -0.47
PCDH9-204ENST00000544246 CFAP100Q494V2 611 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 PDRG1Q9NUG6 133 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 PABPN1LA6NDY0 278 aaKnown RBP12.13□□□□□ -0.47
PCDH9-204ENST00000544246 PDZRN3Q9UPQ7 1066 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 CCDC150Q8NCX0 1101 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 PUS7Q96PZ0 661 aaKnown RBP12.13□□□□□ -0.47
PCDH9-204ENST00000544246 HOMER2Q9NSB8 354 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 SCLT1Q96NL6 688 aa12.13□□□□□ -0.47
PCDH9-204ENST00000544246 BMS1Q14692 1282 aaKnown RBP12.12□□□□□ -0.47
PCDH9-204ENST00000544246 PLEKHO1Q53GL0 409 aaPredicted RBP12.12□□□□□ -0.47
PCDH9-204ENST00000544246 TAOK3Q9H2K8 898 aa12.12□□□□□ -0.47
PCDH9-204ENST00000544246 PPP1R1BQ9UD71 204 aaPredicted RBP12.12□□□□□ -0.47
PCDH9-204ENST00000544246 SMG6Q86US8 1419 aaKnown RBP12.12□□□□□ -0.47
PCDH9-204ENST00000544246 PPP6R1Q9UPN7 881 aa12.12□□□□□ -0.47
PCDH9-204ENST00000544246 CACNA2D4Q7Z3S7 1137 aa12.12□□□□□ -0.47
PCDH9-204ENST00000544246 TSNARE1Q96NA8 513 aa12.12□□□□□ -0.47
PCDH9-204ENST00000544246 CTNNA3Q9UI47 895 aa12.12□□□□□ -0.47
PCDH9-204ENST00000544246 TDO2P48775 406 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 ZSCAN29Q8IWY8 852 aaPredicted RBP12.11□□□□□ -0.47
PCDH9-204ENST00000544246 GPATCH11Q8N954 259 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 USP5P45974 858 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 CALCOCO1Q9P1Z2 691 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 MAP4K4O95819 1239 aaPredicted RBP12.11□□□□□ -0.47
PCDH9-204ENST00000544246 PTPN14Q15678 1187 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 SPECC1LQ69YQ0 1117 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 CGNQ9P2M7 1197 aaKnown RBP12.11□□□□□ -0.47
PCDH9-204ENST00000544246 CUL7Q14999 1698 aa12.11□□□□□ -0.47
PCDH9-204ENST00000544246 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 CTNNA2P26232 953 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 MAP3K11Q16584 847 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 FERMT2Q96AC1 680 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 C1orf115Q9H7X2 142 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 POTEB2H3BUK9 544 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 KIF4BQ2VIQ3 1234 aa12.1□□□□□ -0.47
PCDH9-204ENST00000544246 RRBP1Q9P2E9 1410 aaKnown RBP12.1□□□□□ -0.47
PCDH9-204ENST00000544246 USO1O60763 962 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms