RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 AEBP1Q8IUX7 1158 aa20.32■□□□□ 0.84
CD9-210ENST00000543916 MARCH10Q8NA82 808 aaPredicted RBP20.32■□□□□ 0.84
CD9-210ENST00000543916 TNS1Q9HBL0 1735 aaKnown RBP20.31■□□□□ 0.84
CD9-210ENST00000543916 KDRP35968 1356 aa20.31■□□□□ 0.84
CD9-210ENST00000543916 SULT6B1Q6IMI4 303 aa20.3■□□□□ 0.84
CD9-210ENST00000543916 ZCRB1Q8TBF4 217 aaKnown RBP20.29■□□□□ 0.84
CD9-210ENST00000543916 UPF1Q92900 1129 aaKnown RBP eCLIP20.28■□□□□ 0.84
CD9-210ENST00000543916 DOT1LQ8TEK3 1739 aa20.27■□□□□ 0.84
CD9-210ENST00000543916 U2SURPO15042 1029 aaKnown RBP20.27■□□□□ 0.84
CD9-210ENST00000543916 HMOX1P09601 288 aa20.27■□□□□ 0.84
CD9-210ENST00000543916 PLEKHG2Q9H7P9 1386 aa20.26■□□□□ 0.83
CD9-210ENST00000543916 FAM196AQ6ZSG2 479 aa20.26■□□□□ 0.83
CD9-210ENST00000543916 DDX54Q8TDD1 881 aaKnown RBP20.26■□□□□ 0.83
CD9-210ENST00000543916 BCL9O00512 1426 aa20.26■□□□□ 0.83
CD9-210ENST00000543916 NHSQ6T4R5 1651 aa20.26■□□□□ 0.83
CD9-210ENST00000543916 TOGARAM1Q9Y4F4 1720 aa20.24■□□□□ 0.83
CD9-210ENST00000543916 PCDH11XQ9BZA7 1347 aa20.24■□□□□ 0.83
CD9-210ENST00000543916 PCDH11YQ9BZA8 1340 aa20.24■□□□□ 0.83
CD9-210ENST00000543916 CYP27B1O15528 508 aa20.23■□□□□ 0.83
CD9-210ENST00000543916 NUDCQ9Y266 331 aa20.23■□□□□ 0.83
CD9-210ENST00000543916 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.22■□□□□ 0.83
CD9-210ENST00000543916 SPG7Q9UQ90 795 aa20.22■□□□□ 0.83
CD9-210ENST00000543916 ANP32CO43423 234 aa20.21■□□□□ 0.83
CD9-210ENST00000543916 TRIM37O94972 964 aa20.21■□□□□ 0.83
CD9-210ENST00000543916 U2AF1L5P0DN76 240 aaPredicted RBP20.2■□□□□ 0.82
CD9-210ENST00000543916 U2AF1Q01081 240 aaKnown RBP eCLIP20.2■□□□□ 0.82
CD9-210ENST00000543916 BTAF1O14981 1849 aa20.19■□□□□ 0.82
CD9-210ENST00000543916 RSPH6AQ9H0K4 717 aa20.19■□□□□ 0.82
CD9-210ENST00000543916 ITGB4P16144 1822 aa20.18■□□□□ 0.82
CD9-210ENST00000543916 VIRMAQ69YN4 1812 aaKnown RBP20.18■□□□□ 0.82
CD9-210ENST00000543916 PLEKHO1Q53GL0 409 aaPredicted RBP20.18■□□□□ 0.82
CD9-210ENST00000543916 PTF1AQ7RTS3 328 aa20.18■□□□□ 0.82
CD9-210ENST00000543916 CCDC125Q86Z20 511 aa20.18■□□□□ 0.82
CD9-210ENST00000543916 ACSBG1Q96GR2 724 aa20.18■□□□□ 0.82
CD9-210ENST00000543916 PHKG2P15735 406 aa20.17■□□□□ 0.82
CD9-210ENST00000543916 AMOTQ4VCS5 1084 aa20.17■□□□□ 0.82
CD9-210ENST00000543916 KCNQ2O43526 872 aa20.16■□□□□ 0.82
CD9-210ENST00000543916 PRKAR2BP31323 418 aa20.16■□□□□ 0.82
CD9-210ENST00000543916 CCDC184Q52MB2 194 aa20.16■□□□□ 0.82
CD9-210ENST00000543916 ZNF530Q6P9A1 599 aaPredicted RBP20.16■□□□□ 0.82
CD9-210ENST00000543916 NKX1-1Q15270 411 aaPredicted RBP20.15■□□□□ 0.82
CD9-210ENST00000543916 IFNL2Q8IZJ0 200 aa20.15■□□□□ 0.82
CD9-210ENST00000543916 SCN11AQ9UI33 1791 aa20.15■□□□□ 0.82
CD9-210ENST00000543916 RGPD3A6NKT7 1758 aaPredicted RBP20.14■□□□□ 0.81
CD9-210ENST00000543916 RGPD4Q7Z3J3 1758 aa20.14■□□□□ 0.81
CD9-210ENST00000543916 FCHSD2O94868 740 aa20.14■□□□□ 0.81
CD9-210ENST00000543916 SF3B2Q13435 895 aaKnown RBP20.14■□□□□ 0.81
CD9-210ENST00000543916 MTHFSDQ2M296 383 aaKnown RBP20.14■□□□□ 0.81
CD9-210ENST00000543916 BCL11BQ9C0K0 894 aaPredicted RBP20.14■□□□□ 0.81
CD9-210ENST00000543916 ADAMTS7Q9UKP4 1686 aa20.13■□□□□ 0.81
CD9-210ENST00000543916 KDM6AO15550 1401 aaPredicted RBP20.13■□□□□ 0.81
CD9-210ENST00000543916 DEFB132Q7Z7B7 95 aa20.13■□□□□ 0.81
CD9-210ENST00000543916 PHACTR3Q96KR7 559 aa20.13■□□□□ 0.81
CD9-210ENST00000543916 KAT6BQ8WYB5 2073 aa20.12■□□□□ 0.81
CD9-210ENST00000543916 RREB1Q92766 1687 aa20.12■□□□□ 0.81
CD9-210ENST00000543916 APBA3O96018 575 aa20.11■□□□□ 0.81
CD9-210ENST00000543916 PRIM1P49642 420 aaKnown RBP20.11■□□□□ 0.81
CD9-210ENST00000543916 C1orf141Q5JVX7 400 aa20.11■□□□□ 0.81
CD9-210ENST00000543916 DLG5Q8TDM6 1919 aa20.11■□□□□ 0.81
CD9-210ENST00000543916 BAG6P46379 1132 aa20.1■□□□□ 0.81
CD9-210ENST00000543916 SYTL4Q96C24 671 aaPredicted RBP20.1■□□□□ 0.81
CD9-210ENST00000543916 PLEKHF1Q96S99 279 aa20.1■□□□□ 0.81
CD9-210ENST00000543916 WDR43Q15061 677 aaKnown RBP eCLIP20.09■□□□□ 0.81
CD9-210ENST00000543916 AKAP4Q5JQC9 854 aa20.09■□□□□ 0.81
CD9-210ENST00000543916 HSP90AB1P08238 724 aaKnown RBP20.08■□□□□ 0.81
CD9-210ENST00000543916 EN1Q05925 392 aaPredicted RBP20.08■□□□□ 0.81
CD9-210ENST00000543916 DCAF5Q96JK2 942 aa20.08■□□□□ 0.81
CD9-210ENST00000543916 LY75O60449 1722 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 NUP188Q5SRE5 1749 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 MPRIPQ6WCQ1 1025 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 GAS2L2Q8NHY3 880 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 ADAMTS8Q9UP79 889 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 MAP3K5Q99683 1374 aa20.07■□□□□ 0.8
CD9-210ENST00000543916 MRS2Q9HD23 443 aa20.06■□□□□ 0.8
CD9-210ENST00000543916 MRC1P22897 1456 aa20.05■□□□□ 0.8
CD9-210ENST00000543916 EZH2Q15910 746 aaKnown RBP20.05■□□□□ 0.8
CD9-210ENST00000543916 DIEXFQ68CQ4 756 aaKnown RBP20.05■□□□□ 0.8
CD9-210ENST00000543916 CAMKK2Q96RR4 588 aa20.05■□□□□ 0.8
CD9-210ENST00000543916 SIPA1L3O60292 1781 aaPredicted RBP20.05■□□□□ 0.8
CD9-210ENST00000543916 PLSCR1O15162 318 aa20.04■□□□□ 0.8
CD9-210ENST00000543916 LGR6Q9HBX8 967 aa20.04■□□□□ 0.8
CD9-210ENST00000543916 ERVV-2B6SEH9 535 aa20.03■□□□□ 0.8
CD9-210ENST00000543916 CCDC146Q8IYE0 955 aa20.03■□□□□ 0.8
CD9-210ENST00000543916 PIGBQ92521 554 aa20.03■□□□□ 0.8
CD9-210ENST00000543916 PNNQ9H307 717 aaKnown RBP20.03■□□□□ 0.8
CD9-210ENST00000543916 MAPK8IP3Q9UPT6 1336 aa20.02■□□□□ 0.8
CD9-210ENST00000543916 PAPPAQ13219 1627 aa20.02■□□□□ 0.8
CD9-210ENST00000543916 GNAT3A8MTJ3 354 aa20.02■□□□□ 0.8
CD9-210ENST00000543916 RNMTO43148 476 aaKnown RBP20.02■□□□□ 0.8
CD9-210ENST00000543916 NEFMP07197 916 aa20.02■□□□□ 0.8
CD9-210ENST00000543916 TMOD3Q9NYL9 352 aa20.02■□□□□ 0.8
CD9-210ENST00000543916 PNISRQ8TF01 805 aaKnown RBP20.01■□□□□ 0.79
CD9-210ENST00000543916 NFE2L2Q16236 605 aa20■□□□□ 0.79
CD9-210ENST00000543916 IL17REQ8NFR9 667 aa20■□□□□ 0.79
CD9-210ENST00000543916 CABP4P57796 275 aa19.99■□□□□ 0.79
CD9-210ENST00000543916 PROM2Q8N271 834 aa19.99■□□□□ 0.79
CD9-210ENST00000543916 RUNDC1Q96C34 613 aa19.99■□□□□ 0.79
CD9-210ENST00000543916 CEMIPQ8WUJ3 1361 aa19.98■□□□□ 0.79
CD9-210ENST00000543916 NFATC2IPQ8NCF5 419 aa19.98■□□□□ 0.79
CD9-210ENST00000543916 PALLDQ8WX93 1383 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms