RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 KIF1BO60333 1816 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 WDR33Q9C0J8 1336 aaKnown RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 ASXL2Q76L83 1435 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 RNF214Q8ND24 703 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 BBXQ8WY36 941 aaPredicted RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 BCL2L12Q9HB09 334 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 ATP6V1DQ9Y5K8 247 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 DEPDC5O75140 1603 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.04□□□□□ -1.44
LMO3-229ENST00000543721 PLCH2O75038 1416 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 U2SURPO15042 1029 aaKnown RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 GNAI1P63096 354 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 CUL4AQ13619 759 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 ZNF771Q7L3S4 317 aaPredicted RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 IFNLR1Q8IU57 520 aaPredicted RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 ARID3AQ99856 593 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 SLC12A5Q9H2X9 1139 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 CGNQ9P2M7 1197 aaKnown RBP6.04□□□□□ -1.44
LMO3-229ENST00000543721 ZDHHC9Q9Y397 364 aa6.04□□□□□ -1.44
LMO3-229ENST00000543721 ABCC4O15439 1325 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 CTIFO43310 598 aaKnown RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 FCHSD2O94868 740 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 CDK11BP21127 795 aaKnown RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 TMEM87AQ8NBN3 555 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 SPAG9O60271 1321 aaKnown RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 RPGRIP1LQ68CZ1 1315 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 ADCY5O95622 1261 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 VASPP50552 380 aaPredicted RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 MRPL50Q8N5N7 158 aaKnown RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 TSPYL1Q9H0U9 437 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 CD109Q6YHK3 1445 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 FANCAO15360 1455 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 KDM4AO75164 1064 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 PDIA4P13667 645 aaKnown RBP6.03□□□□□ -1.44
LMO3-229ENST00000543721 MX1P20591 662 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 LMOD3Q0VAK6 560 aa6.03□□□□□ -1.44
LMO3-229ENST00000543721 VWDEQ8N2E2 1590 aa6.02□□□□□ -1.44
LMO3-229ENST00000543721 AK9Q5TCS8 1911 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 ZC3H13Q5T200 1668 aaKnown RBP6.02□□□□□ -1.45
LMO3-229ENST00000543721 IFT172Q9UG01 1749 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 GSPT1P15170 499 aaKnown RBP6.02□□□□□ -1.45
LMO3-229ENST00000543721 ZGPATQ8N5A5 531 aaKnown RBP6.02□□□□□ -1.45
LMO3-229ENST00000543721 KIAA1524Q8TCG1 905 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 PAXBP1Q9Y5B6 917 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 QRICH2Q9H0J4 1663 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 DIAPH1O60610 1272 aaKnown RBP6.02□□□□□ -1.45
LMO3-229ENST00000543721 HMMRO75330 724 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 ATP2B3Q16720 1220 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 TMX3Q96JJ7 454 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 ADGRF5Q8IZF2 1346 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 ABCC1P33527 1531 aa6.02□□□□□ -1.45
LMO3-229ENST00000543721 PKP1Q13835 747 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 C14orf93Q9H972 538 aaKnown RBP6.01□□□□□ -1.45
LMO3-229ENST00000543721 IFT57Q9NWB7 429 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 ZFYVE9O95405 1425 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 SSH2Q76I76 1423 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 SMTNL1A8MU46 457 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 VAMP4O75379 141 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 NEK4P51957 841 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 UBE2HP62256 183 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 ANKRD44Q8N8A2 993 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 CALCOCO1Q9P1Z2 691 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 ARAP3Q8WWN8 1544 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 IL17RAQ96F46 866 aa6.01□□□□□ -1.45
LMO3-229ENST00000543721 COL3A1P02461 1466 aaPredicted RBP6□□□□□ -1.45
LMO3-229ENST00000543721 RIOK3O14730 519 aaKnown RBP6□□□□□ -1.45
LMO3-229ENST00000543721 SDSP20132 328 aa6□□□□□ -1.45
LMO3-229ENST00000543721 SLC20A2Q08357 652 aa6□□□□□ -1.45
LMO3-229ENST00000543721 RNF20Q5VTR2 975 aa6□□□□□ -1.45
LMO3-229ENST00000543721 SIRT2Q8IXJ6 389 aa6□□□□□ -1.45
LMO3-229ENST00000543721 IPO4Q8TEX9 1081 aaKnown RBP6□□□□□ -1.45
LMO3-229ENST00000543721 OSBPL3Q9H4L5 887 aa6□□□□□ -1.45
LMO3-229ENST00000543721 TERF2IPQ9NYB0 399 aa6□□□□□ -1.45
LMO3-229ENST00000543721 SSUH2Q9Y2M2 353 aa6□□□□□ -1.45
LMO3-229ENST00000543721 DNAJC2Q99543 621 aaKnown RBP6□□□□□ -1.45
LMO3-229ENST00000543721 TTC12Q9H892 705 aaPredicted RBP6□□□□□ -1.45
LMO3-229ENST00000543721 CDC42BPGQ6DT37 1551 aa6□□□□□ -1.45
LMO3-229ENST00000543721 FAM135BQ49AJ0 1406 aa6□□□□□ -1.45
LMO3-229ENST00000543721 RTL1A6NKG5 1358 aa6□□□□□ -1.45
LMO3-229ENST00000543721 VGFO15240 615 aaPredicted RBP6□□□□□ -1.45
LMO3-229ENST00000543721 GTF2E1P29083 439 aaPredicted RBP6□□□□□ -1.45
LMO3-229ENST00000543721 NSFL1CQ9UNZ2 370 aaKnown RBP6□□□□□ -1.45
LMO3-229ENST00000543721 MORC2Q9Y6X9 1032 aaPredicted RBP6□□□□□ -1.45
LMO3-229ENST00000543721 ABCA9Q8IUA7 1624 aa6□□□□□ -1.45
LMO3-229ENST00000543721 CCDC192P0DO97 292 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 NFE2L2Q16236 605 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 USP48Q86UV5 1035 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 TIGD1Q96MW7 591 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 TRAK1Q9UPV9 953 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 PNPLA6Q8IY17 1366 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.99□□□□□ -1.45
LMO3-229ENST00000543721 KRT222Q8N1A0 295 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 DDX41Q9UJV9 622 aaKnown RBP5.99□□□□□ -1.45
LMO3-229ENST00000543721 ANKRD26Q9UPS8 1709 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 RGS12O14924 1447 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 U2AF2P26368 475 aaKnown RBP eCLIP5.99□□□□□ -1.45
LMO3-229ENST00000543721 CCDC112Q8NEF3 446 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 C1orf115Q9H7X2 142 aa5.99□□□□□ -1.45
LMO3-229ENST00000543721 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.99□□□□□ -1.45
LMO3-229ENST00000543721 NEMFO60524 1076 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms