RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SEPT12Q8IYM1 358 aa22.8■■□□□ 1.24
LIG1-204ENST00000542460 RSPH6AQ9H0K4 717 aa22.79■■□□□ 1.24
LIG1-204ENST00000542460 MEGF6O75095 1541 aa22.79■■□□□ 1.24
LIG1-204ENST00000542460 PLEKHG2Q9H7P9 1386 aa22.78■■□□□ 1.24
LIG1-204ENST00000542460 EXOC5O00471 708 aa22.78■■□□□ 1.24
LIG1-204ENST00000542460 DDB1Q16531 1140 aa22.78■■□□□ 1.24
LIG1-204ENST00000542460 PNNQ9H307 717 aaKnown RBP22.78■■□□□ 1.24
LIG1-204ENST00000542460 ADAMTS8Q9UP79 889 aa22.78■■□□□ 1.24
LIG1-204ENST00000542460 OVOS2A0A0G2JMS6 1433 aa22.77■■□□□ 1.24
LIG1-204ENST00000542460 PRKAR2BP31323 418 aa22.77■■□□□ 1.24
LIG1-204ENST00000542460 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.77■■□□□ 1.246e-6■□□□□ 8.9
LIG1-204ENST00000542460 THSD7AQ9UPZ6 1657 aa22.76■■□□□ 1.23
LIG1-204ENST00000542460 ZCRB1Q8TBF4 217 aaKnown RBP22.76■■□□□ 1.23
LIG1-204ENST00000542460 AMOTQ4VCS5 1084 aa22.75■■□□□ 1.23
LIG1-204ENST00000542460 PLEKHO1Q53GL0 409 aaPredicted RBP22.75■■□□□ 1.23
LIG1-204ENST00000542460 SPG7Q9UQ90 795 aa22.75■■□□□ 1.23
LIG1-204ENST00000542460 NEFMP07197 916 aa22.73■■□□□ 1.23
LIG1-204ENST00000542460 PDE3BQ13370 1112 aa22.73■■□□□ 1.23
LIG1-204ENST00000542460 PLEKHF1Q96S99 279 aa22.72■■□□□ 1.23
LIG1-204ENST00000542460 PARP4Q9UKK3 1724 aaKnown RBP22.72■■□□□ 1.23
LIG1-204ENST00000542460 WNK3Q9BYP7 1800 aa22.72■■□□□ 1.23
LIG1-204ENST00000542460 FAM9BQ8IZU0 186 aa22.72■■□□□ 1.23
LIG1-204ENST00000542460 TNS2Q63HR2 1409 aa22.71■■□□□ 1.23
LIG1-204ENST00000542460 PHACTR3Q96KR7 559 aa22.71■■□□□ 1.23
LIG1-204ENST00000542460 PCDH11XQ9BZA7 1347 aa22.7■■□□□ 1.22
LIG1-204ENST00000542460 PCDH11YQ9BZA8 1340 aa22.7■■□□□ 1.22
LIG1-204ENST00000542460 KRT27Q7Z3Y8 459 aa22.7■■□□□ 1.22
LIG1-204ENST00000542460 DDX54Q8TDD1 881 aaKnown RBP22.69■■□□□ 1.22
LIG1-204ENST00000542460 RUNDC1Q96C34 613 aa22.69■■□□□ 1.22
LIG1-204ENST00000542460 MAPK8IP3Q9UPT6 1336 aa22.69■■□□□ 1.22
LIG1-204ENST00000542460 EP400Q96L91 3159 aa22.69■■□□□ 1.22
LIG1-204ENST00000542460 LRRC37A3O60309 1634 aa22.68■■□□□ 1.22
LIG1-204ENST00000542460 MTHFSDQ2M296 383 aaKnown RBP22.68■■□□□ 1.22
LIG1-204ENST00000542460 CCDC146Q8IYE0 955 aa22.67■■□□□ 1.22
LIG1-204ENST00000542460 GAS2L2Q8NHY3 880 aa22.67■■□□□ 1.22
LIG1-204ENST00000542460 CYP27B1O15528 508 aa22.67■■□□□ 1.22
LIG1-204ENST00000542460 ZNF530Q6P9A1 599 aaPredicted RBP22.67■■□□□ 1.22
LIG1-204ENST00000542460 IFNL2Q8IZJ0 200 aa22.67■■□□□ 1.22
LIG1-204ENST00000542460 MARCH10Q8NA82 808 aaPredicted RBP22.67■■□□□ 1.22
LIG1-204ENST00000542460 PKD1L3Q7Z443 1732 aa22.65■■□□□ 1.22
LIG1-204ENST00000542460 PHKG2P15735 406 aa22.65■■□□□ 1.22
LIG1-204ENST00000542460 C1orf141Q5JVX7 400 aa22.65■■□□□ 1.22
LIG1-204ENST00000542460 BRWD3Q6RI45 1802 aa22.63■■□□□ 1.21
LIG1-204ENST00000542460 AKAP4Q5JQC9 854 aa22.63■■□□□ 1.21
LIG1-204ENST00000542460 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
LIG1-204ENST00000542460 NKX1-1Q15270 411 aaPredicted RBP22.62■■□□□ 1.21
LIG1-204ENST00000542460 NFE2L2Q16236 605 aa22.62■■□□□ 1.21
LIG1-204ENST00000542460 FAM182BQ5T319 152 aa22.62■■□□□ 1.21
LIG1-204ENST00000542460 GNAT3A8MTJ3 354 aa22.6■■□□□ 1.21
LIG1-204ENST00000542460 FAM196AQ6ZSG2 479 aa22.6■■□□□ 1.21
LIG1-204ENST00000542460 SHANK3Q9BYB0 1731 aa22.59■■□□□ 1.21
LIG1-204ENST00000542460 APAF1O14727 1248 aa22.59■■□□□ 1.21
LIG1-204ENST00000542460 TMPOP42166 694 aaKnown RBP22.59■■□□□ 1.21
LIG1-204ENST00000542460 DCAF5Q96JK2 942 aa22.59■■□□□ 1.21
LIG1-204ENST00000542460 BCL9O00512 1426 aa22.58■■□□□ 1.21
LIG1-204ENST00000542460 MAP3K5Q99683 1374 aa22.58■■□□□ 1.2
LIG1-204ENST00000542460 RIPK4P57078 832 aa22.57■■□□□ 1.2
LIG1-204ENST00000542460 HTATSF1O43719 755 aaKnown RBP22.57■■□□□ 1.2
LIG1-204ENST00000542460 MPRIPQ6WCQ1 1025 aa22.57■■□□□ 1.2
LIG1-204ENST00000542460 RTF1Q92541 710 aaKnown RBP22.56■■□□□ 1.2
LIG1-204ENST00000542460 RRP7AQ9Y3A4 280 aaKnown RBP22.56■■□□□ 1.2
LIG1-204ENST00000542460 NEUROD2Q15784 382 aa22.55■■□□□ 1.2
LIG1-204ENST00000542460 LMOD3Q0VAK6 560 aa22.53■■□□□ 1.2
LIG1-204ENST00000542460 LGR6Q9HBX8 967 aa22.53■■□□□ 1.2
LIG1-204ENST00000542460 KDM6AO15550 1401 aaPredicted RBP22.52■■□□□ 1.2
LIG1-204ENST00000542460 ERVV-2B6SEH9 535 aa22.52■■□□□ 1.2
LIG1-204ENST00000542460 RNMTO43148 476 aaKnown RBP22.52■■□□□ 1.2
LIG1-204ENST00000542460 IL17REQ8NFR9 667 aa22.52■■□□□ 1.2
LIG1-204ENST00000542460 NCBP3Q53F19 620 aaKnown RBP22.52■■□□□ 1.19
LIG1-204ENST00000542460 CCDC125Q86Z20 511 aa22.52■■□□□ 1.19
LIG1-204ENST00000542460 ACSBG1Q96GR2 724 aa22.52■■□□□ 1.19
LIG1-204ENST00000542460 PRIM1P49642 420 aaKnown RBP22.5■■□□□ 1.19
LIG1-204ENST00000542460 MCM10Q7L590 875 aa22.5■■□□□ 1.19
LIG1-204ENST00000542460 NGEFQ8N5V2 710 aa22.5■■□□□ 1.19
LIG1-204ENST00000542460 SYTL4Q96C24 671 aaPredicted RBP22.5■■□□□ 1.19
LIG1-204ENST00000542460 CEMIPQ8WUJ3 1361 aa22.49■■□□□ 1.19
LIG1-204ENST00000542460 DCTN1Q14203 1278 aa22.49■■□□□ 1.19
LIG1-204ENST00000542460 TRIM35Q9UPQ4 493 aa22.49■■□□□ 1.19
LIG1-204ENST00000542460 SENP3-EIF4A1A0A087X0R7 540 aa22.48■■□□□ 1.19
LIG1-204ENST00000542460 KCNQ2O43526 872 aa22.48■■□□□ 1.19
LIG1-204ENST00000542460 CABP4P57796 275 aa22.48■■□□□ 1.19
LIG1-204ENST00000542460 BCL11BQ9C0K0 894 aaPredicted RBP22.48■■□□□ 1.19
LIG1-204ENST00000542460 TRIM37O94972 964 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 TEFQ10587 303 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 CCDC27Q2M243 656 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 TMOD3Q9NYL9 352 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 NFATC2IPQ8NCF5 419 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 SLC52A2Q9HAB3 445 aa22.47■■□□□ 1.19
LIG1-204ENST00000542460 SALL2Q9Y467 1007 aaPredicted RBP22.45■■□□□ 1.18
LIG1-204ENST00000542460 ADAMTS7Q9UKP4 1686 aa22.45■■□□□ 1.18
LIG1-204ENST00000542460 SF3B2Q13435 895 aaKnown RBP22.44■■□□□ 1.18
LIG1-204ENST00000542460 PIGBQ92521 554 aa22.44■■□□□ 1.18
LIG1-204ENST00000542460 THUMPD2Q9BTF0 503 aaKnown RBP22.44■■□□□ 1.18
LIG1-204ENST00000542460 DLG5Q8TDM6 1919 aa22.43■■□□□ 1.18
LIG1-204ENST00000542460 PTF1AQ7RTS3 328 aa22.43■■□□□ 1.18
LIG1-204ENST00000542460 WWC1Q8IX03 1113 aa22.43■■□□□ 1.18
LIG1-204ENST00000542460 DOT1LQ8TEK3 1739 aa22.43■■□□□ 1.18
LIG1-204ENST00000542460 TOGARAM1Q9Y4F4 1720 aa22.43■■□□□ 1.18
LIG1-204ENST00000542460 SCN11AQ9UI33 1791 aa22.42■■□□□ 1.18
LIG1-204ENST00000542460 MRC1P22897 1456 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 143.6 ms