RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 KDM2AQ9Y2K7 1162 aa13.84□□□□□ -0.19
YBX3-211ENST00000541351 ANKRD36BQ8N2N9 1353 aa13.83□□□□□ -0.19
YBX3-211ENST00000541351 TUBGCP6Q96RT7 1819 aa13.83□□□□□ -0.2
YBX3-211ENST00000541351 SOX12O15370 315 aa13.83□□□□□ -0.2
YBX3-211ENST00000541351 DDX54Q8TDD1 881 aaKnown RBP13.83□□□□□ -0.2
YBX3-211ENST00000541351 DCAF11Q8TEB1 546 aa13.83□□□□□ -0.2
YBX3-211ENST00000541351 ZNF692Q9BU19 519 aaPredicted RBP13.83□□□□□ -0.2
YBX3-211ENST00000541351 ERBB3P21860 1342 aa13.83□□□□□ -0.2
YBX3-211ENST00000541351 C10orf71Q711Q0 1435 aa13.82□□□□□ -0.2
YBX3-211ENST00000541351 KCNQ4P56696 695 aa13.82□□□□□ -0.2
YBX3-211ENST00000541351 TTC21AQ8NDW8 1320 aa13.82□□□□□ -0.2
YBX3-211ENST00000541351 PRIM1P49642 420 aaKnown RBP13.81□□□□□ -0.2
YBX3-211ENST00000541351 ARHGAP27Q6ZUM4 889 aa13.81□□□□□ -0.2
YBX3-211ENST00000541351 CABP1Q9NZU7 370 aa13.81□□□□□ -0.2
YBX3-211ENST00000541351 BCS1LQ9Y276 419 aa13.8□□□□□ -0.2
YBX3-211ENST00000541351 QRICH2Q9H0J4 1663 aa13.79□□□□□ -0.2
YBX3-211ENST00000541351 TGFB2P61812 414 aa13.79□□□□□ -0.2
YBX3-211ENST00000541351 AK7Q96M32 723 aa13.79□□□□□ -0.2
YBX3-211ENST00000541351 PRDM10Q9NQV6 1147 aa13.79□□□□□ -0.2
YBX3-211ENST00000541351 LY75O60449 1722 aa13.78□□□□□ -0.2
YBX3-211ENST00000541351 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
YBX3-211ENST00000541351 PCNTO95613 3336 aa13.77□□□□□ -0.21
YBX3-211ENST00000541351 FAM161AQ3B820 660 aa13.77□□□□□ -0.21
YBX3-211ENST00000541351 TTC21BQ7Z4L5 1316 aa13.77□□□□□ -0.21
YBX3-211ENST00000541351 CABP2Q9NPB3 220 aa13.77□□□□□ -0.21
YBX3-211ENST00000541351 C9orf131Q5VYM1 1079 aa13.76□□□□□ -0.21
YBX3-211ENST00000541351 ANKRD24Q8TF21 1146 aa13.76□□□□□ -0.21
YBX3-211ENST00000541351 AIDAQ96BJ3 306 aa13.76□□□□□ -0.21
YBX3-211ENST00000541351 CENPJQ9HC77 1338 aaPredicted RBP13.75□□□□□ -0.21
YBX3-211ENST00000541351 MLLT1Q03111 559 aaPredicted RBP13.75□□□□□ -0.21
YBX3-211ENST00000541351 FCHSD2O94868 740 aa13.74□□□□□ -0.21
YBX3-211ENST00000541351 SSFA2P28290 1259 aa13.74□□□□□ -0.21
YBX3-211ENST00000541351 RRAGCQ9HB90 399 aa13.74□□□□□ -0.21
YBX3-211ENST00000541351 NFAT5O94916 1531 aa13.74□□□□□ -0.21
YBX3-211ENST00000541351 PXDNLA1KZ92 1463 aa13.74□□□□□ -0.21
YBX3-211ENST00000541351 ZC3H4Q9UPT8 1303 aaKnown RBP13.73□□□□□ -0.21
YBX3-211ENST00000541351 CTCFP49711 727 aaPredicted RBP13.73□□□□□ -0.21
YBX3-211ENST00000541351 PPARGC1BQ86YN6 1023 aaKnown RBP13.72□□□□□ -0.21
YBX3-211ENST00000541351 SMARCC1Q92922 1105 aaPredicted RBP13.72□□□□□ -0.21
YBX3-211ENST00000541351 TNRC6CQ9HCJ0 1690 aaKnown RBP13.72□□□□□ -0.21
YBX3-211ENST00000541351 NSD2O96028 1365 aa13.71□□□□□ -0.21
YBX3-211ENST00000541351 EVC2Q86UK5 1308 aa13.71□□□□□ -0.21
YBX3-211ENST00000541351 KCPQ6ZWJ8 1503 aa13.71□□□□□ -0.21
YBX3-211ENST00000541351 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.71□□□□□ -0.21
YBX3-211ENST00000541351 ZCRB1Q8TBF4 217 aaKnown RBP13.71□□□□□ -0.21
YBX3-211ENST00000541351 C5P01031 1676 aa13.71□□□□□ -0.21
YBX3-211ENST00000541351 PHF14O94880 888 aa13.7□□□□□ -0.22
YBX3-211ENST00000541351 VEGFAP15692 232 aaPredicted RBP13.7□□□□□ -0.22
YBX3-211ENST00000541351 CCDC87Q9NVE4 849 aa13.7□□□□□ -0.22
YBX3-211ENST00000541351 RNF181Q9P0P0 153 aa13.7□□□□□ -0.22
YBX3-211ENST00000541351 DOT1LQ8TEK3 1739 aa13.7□□□□□ -0.22
YBX3-211ENST00000541351 CGNL1Q0VF96 1302 aa13.69□□□□□ -0.22
YBX3-211ENST00000541351 PALLDQ8WX93 1383 aa13.69□□□□□ -0.22
YBX3-211ENST00000541351 CREBZFQ9NS37 354 aa13.68□□□□□ -0.22
YBX3-211ENST00000541351 KTN1Q86UP2 1357 aaKnown RBP13.68□□□□□ -0.22
YBX3-211ENST00000541351 USP54Q70EL1 1684 aa13.67□□□□□ -0.22
YBX3-211ENST00000541351 A0A0G2JLW4 131 aa13.67□□□□□ -0.22
YBX3-211ENST00000541351 MMP10P09238 476 aa13.67□□□□□ -0.22
YBX3-211ENST00000541351 NLGN1Q8N2Q7 840 aa13.67□□□□□ -0.22
YBX3-211ENST00000541351 ABHD8Q96I13 439 aa13.67□□□□□ -0.22
YBX3-211ENST00000541351 FAM208AQ9UK61 1670 aaKnown RBP13.66□□□□□ -0.22
YBX3-211ENST00000541351 FOXN1O15353 648 aa13.66□□□□□ -0.22
YBX3-211ENST00000541351 PIM2Q9P1W9 311 aa13.66□□□□□ -0.22
YBX3-211ENST00000541351 USP31Q70CQ4 1352 aa13.66□□□□□ -0.22
YBX3-211ENST00000541351 DALRD3Q5D0E6 543 aaKnown RBP13.65□□□□□ -0.22
YBX3-211ENST00000541351 C4BP0C0L5 1744 aa13.64□□□□□ -0.23
YBX3-211ENST00000541351 PKD1L3Q7Z443 1732 aa13.64□□□□□ -0.23
YBX3-211ENST00000541351 KIAA1210Q9ULL0 1709 aa13.64□□□□□ -0.23
YBX3-211ENST00000541351 IP6K1Q92551 441 aa13.64□□□□□ -0.23
YBX3-211ENST00000541351 DPEP1P16444 411 aa13.63□□□□□ -0.23
YBX3-211ENST00000541351 RGS19P49795 217 aa13.63□□□□□ -0.23
YBX3-211ENST00000541351 KIF13BQ9NQT8 1826 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 GLTPD2A6NH11 291 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 TMF1P82094 1093 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 MPRIPQ6WCQ1 1025 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 RAPGEF4Q8WZA2 1011 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 LTV1Q96GA3 475 aaPredicted RBP13.62□□□□□ -0.23
YBX3-211ENST00000541351 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 MKRN1Q9UHC7 482 aaKnown RBP13.62□□□□□ -0.23
YBX3-211ENST00000541351 PARP3Q9Y6F1 533 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 PCDH11XQ9BZA7 1347 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 PCDH11YQ9BZA8 1340 aa13.62□□□□□ -0.23
YBX3-211ENST00000541351 GNPATO15228 680 aa13.61□□□□□ -0.23
YBX3-211ENST00000541351 DPY19L2Q6NUT2 758 aa13.61□□□□□ -0.23
YBX3-211ENST00000541351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.61□□□□□ -0.23
YBX3-211ENST00000541351 TAF1LQ8IZX4 1826 aa13.61□□□□□ -0.23
YBX3-211ENST00000541351 LTN1O94822 1766 aa13.6□□□□□ -0.23
YBX3-211ENST00000541351 CCDC85CA6NKD9 419 aa13.6□□□□□ -0.23
YBX3-211ENST00000541351 CNTNAP1P78357 1384 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 UBR3Q6ZT12 1888 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 N4BP2Q86UW6 1770 aaPredicted RBP13.59□□□□□ -0.23
YBX3-211ENST00000541351 LMNB1P20700 586 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 LBX1P52954 281 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 ARFGEF1Q9Y6D6 1849 aa13.59□□□□□ -0.23
YBX3-211ENST00000541351 TATP17735 454 aaPredicted RBP13.58□□□□□ -0.24
YBX3-211ENST00000541351 ADRA2BP18089 450 aa13.58□□□□□ -0.24
YBX3-211ENST00000541351 RTCBQ9Y3I0 505 aaKnown RBP13.58□□□□□ -0.24
YBX3-211ENST00000541351 LOC102724428A0A0B4J2F2 783 aa13.57□□□□□ -0.24
YBX3-211ENST00000541351 AMPHP49418 695 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms