RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 CDCA8Q53HL2 280 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 NGEFQ8N5V2 710 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 BACH2Q9BYV9 841 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 BCL11BQ9C0K0 894 aaPredicted RBP13.5□□□□□ -0.25
CHFR-219ENST00000541341 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 NHSQ6T4R5 1651 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 NINLQ9Y2I6 1382 aa13.49□□□□□ -0.25
CHFR-219ENST00000541341 PDE4AP27815 886 aa13.48□□□□□ -0.25
CHFR-219ENST00000541341 ARHGEF25Q86VW2 580 aa13.48□□□□□ -0.25
CHFR-219ENST00000541341 ACSBG1Q96GR2 724 aa13.48□□□□□ -0.25
CHFR-219ENST00000541341 ATF5Q9Y2D1 282 aaPredicted RBP13.48□□□□□ -0.25
CHFR-219ENST00000541341 PROM2Q8N271 834 aa13.47□□□□□ -0.25
CHFR-219ENST00000541341 CD163L1Q9NR16 1453 aa13.47□□□□□ -0.25
CHFR-219ENST00000541341 TUBGCP6Q96RT7 1819 aa13.46□□□□□ -0.25
CHFR-219ENST00000541341 NME9Q86XW9 330 aa13.46□□□□□ -0.25
CHFR-219ENST00000541341 CHD4Q14839 1912 aa13.46□□□□□ -0.25
CHFR-219ENST00000541341 USP54Q70EL1 1684 aa13.46□□□□□ -0.26
CHFR-219ENST00000541341 EXOC5O00471 708 aa13.45□□□□□ -0.26
CHFR-219ENST00000541341 PLSCR1O15162 318 aa13.45□□□□□ -0.26
CHFR-219ENST00000541341 NEFMP07197 916 aa13.45□□□□□ -0.26
CHFR-219ENST00000541341 KCNH5Q8NCM2 988 aa13.45□□□□□ -0.26
CHFR-219ENST00000541341 KIF20BQ96Q89 1820 aa13.45□□□□□ -0.26
CHFR-219ENST00000541341 ANKRD26Q9UPS8 1709 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 AAMPQ13685 434 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 TXNRD1Q16881 649 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
CHFR-219ENST00000541341 CARD10Q9BWT7 1032 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 NLRP2Q9NX02 1062 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 DOT1LQ8TEK3 1739 aa13.44□□□□□ -0.26
CHFR-219ENST00000541341 TTC21AQ8NDW8 1320 aa13.43□□□□□ -0.26
CHFR-219ENST00000541341 TNS2Q63HR2 1409 aa13.43□□□□□ -0.26
CHFR-219ENST00000541341 CENPQQ7L2Z9 268 aaPredicted RBP13.43□□□□□ -0.26
CHFR-219ENST00000541341 DCAF8L1A6NGE4 600 aa13.42□□□□□ -0.26
CHFR-219ENST00000541341 LTV1Q96GA3 475 aaPredicted RBP13.42□□□□□ -0.26
CHFR-219ENST00000541341 STK32BQ9NY57 414 aa13.42□□□□□ -0.26
CHFR-219ENST00000541341 SHANK3Q9BYB0 1731 aa13.42□□□□□ -0.26
CHFR-219ENST00000541341 CDCA7Q9BWT1 371 aaPredicted RBP13.41□□□□□ -0.26
CHFR-219ENST00000541341 SLC12A5Q9H2X9 1139 aa13.41□□□□□ -0.26
CHFR-219ENST00000541341 ANKRD36BQ8N2N9 1353 aa13.41□□□□□ -0.26
CHFR-219ENST00000541341 ABCC6O95255 1503 aa13.4□□□□□ -0.26
CHFR-219ENST00000541341 PAPPAQ13219 1627 aa13.4□□□□□ -0.26
CHFR-219ENST00000541341 GSE1Q14687 1217 aa13.4□□□□□ -0.26
CHFR-219ENST00000541341 SLC15A2Q16348 729 aa13.4□□□□□ -0.26
CHFR-219ENST00000541341 ANKRD24Q8TF21 1146 aa13.4□□□□□ -0.26
CHFR-219ENST00000541341 FAM208AQ9UK61 1670 aaKnown RBP13.4□□□□□ -0.26
CHFR-219ENST00000541341 PTGER2P43116 358 aa13.39□□□□□ -0.27
CHFR-219ENST00000541341 A0A1W2PP64 1363 aa13.39□□□□□ -0.27
CHFR-219ENST00000541341 ERBB3P21860 1342 aa13.39□□□□□ -0.27
CHFR-219ENST00000541341 UTRNP46939 3433 aa13.38□□□□□ -0.27
CHFR-219ENST00000541341 FBLN1P23142 703 aa13.38□□□□□ -0.27
CHFR-219ENST00000541341 KCNQ4P56696 695 aa13.38□□□□□ -0.27
CHFR-219ENST00000541341 KLHL34Q8N239 644 aa13.38□□□□□ -0.27
CHFR-219ENST00000541341 FHDC1Q9C0D6 1143 aaPredicted RBP13.38□□□□□ -0.27
CHFR-219ENST00000541341 IL2RBP14784 551 aa13.37□□□□□ -0.27
CHFR-219ENST00000541341 HDGFL2Q7Z4V5 671 aaPredicted RBP13.37□□□□□ -0.27
CHFR-219ENST00000541341 DDX54Q8TDD1 881 aaKnown RBP13.37□□□□□ -0.27
CHFR-219ENST00000541341 BCL9O00512 1426 aa13.37□□□□□ -0.27
CHFR-219ENST00000541341 EDC4Q6P2E9 1401 aaKnown RBP13.37□□□□□ -0.27
CHFR-219ENST00000541341 LY75O60449 1722 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 QSER1Q2KHR3 1735 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 USP31Q70CQ4 1352 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 ZNF827Q17R98 1081 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 FAM161AQ3B820 660 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 TERF2IPQ9NYB0 399 aa13.36□□□□□ -0.27
CHFR-219ENST00000541341 EXOC6Q8TAG9 804 aa13.35□□□□□ -0.27
CHFR-219ENST00000541341 POLR3GLQ9BT43 218 aa13.35□□□□□ -0.27
CHFR-219ENST00000541341 SYTL4Q96C24 671 aaPredicted RBP13.34□□□□□ -0.27
CHFR-219ENST00000541341 SYT17Q9BSW7 474 aa13.34□□□□□ -0.27
CHFR-219ENST00000541341 LRRC4BQ9NT99 713 aa13.34□□□□□ -0.27
CHFR-219ENST00000541341 PER1O15534 1290 aaPredicted RBP13.33□□□□□ -0.28
CHFR-219ENST00000541341 BECN1Q14457 450 aa13.33□□□□□ -0.28
CHFR-219ENST00000541341 MTFR1LQ9H019 292 aa13.33□□□□□ -0.28
CHFR-219ENST00000541341 RSPH6AQ9H0K4 717 aa13.33□□□□□ -0.28
CHFR-219ENST00000541341 NSD3Q9BZ95 1437 aa13.32□□□□□ -0.28
CHFR-219ENST00000541341 ARXQ96QS3 562 aa13.32□□□□□ -0.28
CHFR-219ENST00000541341 PANK3Q9H999 370 aa13.32□□□□□ -0.28
CHFR-219ENST00000541341 ITGB4P16144 1822 aa13.32□□□□□ -0.28
CHFR-219ENST00000541341 NPC1L1Q9UHC9 1359 aa13.32□□□□□ -0.28
CHFR-219ENST00000541341 L1TD1Q5T7N2 865 aaKnown RBP13.31□□□□□ -0.28
CHFR-219ENST00000541341 NPM2Q86SE8 214 aaKnown RBP13.31□□□□□ -0.28
CHFR-219ENST00000541341 USHBP1Q8N6Y0 703 aa13.31□□□□□ -0.28
CHFR-219ENST00000541341 CARD14Q9BXL6 1004 aa13.31□□□□□ -0.28
CHFR-219ENST00000541341 TAF1LQ8IZX4 1826 aa13.31□□□□□ -0.28
CHFR-219ENST00000541341 COL24A1Q17RW2 1714 aa13.3□□□□□ -0.28
CHFR-219ENST00000541341 VIRMAQ69YN4 1812 aaKnown RBP13.3□□□□□ -0.28
CHFR-219ENST00000541341 ZNF784Q8NCA9 323 aaPredicted RBP13.3□□□□□ -0.28
CHFR-219ENST00000541341 SGIP1Q9BQI5 828 aa13.3□□□□□ -0.28
CHFR-219ENST00000541341 MAPK8IP3Q9UPT6 1336 aa13.3□□□□□ -0.28
CHFR-219ENST00000541341 C5P01031 1676 aa13.3□□□□□ -0.28
CHFR-219ENST00000541341 NSD2O96028 1365 aa13.3□□□□□ -0.28
CHFR-219ENST00000541341 GOLGB1Q14789 3259 aaKnown RBP13.3□□□□□ -0.28
CHFR-219ENST00000541341 MAP2P11137 1827 aaKnown RBP13.29□□□□□ -0.28
CHFR-219ENST00000541341 AMPHP49418 695 aa13.29□□□□□ -0.28
CHFR-219ENST00000541341 WDR43Q15061 677 aaKnown RBP eCLIP13.29□□□□□ -0.28
CHFR-219ENST00000541341 IP6K1Q92551 441 aa13.29□□□□□ -0.28
CHFR-219ENST00000541341 MEGF6O75095 1541 aa13.29□□□□□ -0.28
CHFR-219ENST00000541341 HOXC9P31274 260 aa13.28□□□□□ -0.28
CHFR-219ENST00000541341 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
CHFR-219ENST00000541341 RRS1Q15050 365 aaKnown RBP13.28□□□□□ -0.28
CHFR-219ENST00000541341 FAM43AQ8N2R8 423 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms