RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 PTGIRP43119 386 aa12.58□□□□□ -0.4
YBX3-210ENST00000540975 NFATC2IPQ8NCF5 419 aa12.58□□□□□ -0.4
YBX3-210ENST00000540975 OSBPL3Q9H4L5 887 aa12.58□□□□□ -0.4
YBX3-210ENST00000540975 SKIP12755 728 aa12.57□□□□□ -0.4
YBX3-210ENST00000540975 CALR3Q96L12 384 aaKnown RBP12.57□□□□□ -0.4
YBX3-210ENST00000540975 ZNF395Q9H8N7 513 aaPredicted RBP12.57□□□□□ -0.4
YBX3-210ENST00000540975 SPINT1O43278 529 aa12.56□□□□□ -0.4
YBX3-210ENST00000540975 MYCP01106 439 aaPredicted RBP12.56□□□□□ -0.4
YBX3-210ENST00000540975 ATP5J2-PTCD1G3V325 749 aa12.55□□□□□ -0.4
YBX3-210ENST00000540975 OXLD1Q5BKU9 147 aa12.55□□□□□ -0.4
YBX3-210ENST00000540975 UCN2Q96RP3 112 aa12.55□□□□□ -0.4
YBX3-210ENST00000540975 TBC1D9Q6ZT07 1266 aa12.54□□□□□ -0.4
YBX3-210ENST00000540975 SIRT1Q96EB6 747 aa12.54□□□□□ -0.4
YBX3-210ENST00000540975 CYP2U1Q7Z449 544 aa12.53□□□□□ -0.4
YBX3-210ENST00000540975 C14orf37Q86TY3 774 aa12.53□□□□□ -0.4
YBX3-210ENST00000540975 SOS2Q07890 1332 aaPredicted RBP12.53□□□□□ -0.4
YBX3-210ENST00000540975 LZTS3O60299 673 aaPredicted RBP12.52□□□□□ -0.41
YBX3-210ENST00000540975 INSM2Q96T92 566 aaPredicted RBP12.52□□□□□ -0.41
YBX3-210ENST00000540975 A0A1W2PRU2 124 aa12.51□□□□□ -0.41
YBX3-210ENST00000540975 TTLL8A6PVC2 850 aa12.5□□□□□ -0.41
YBX3-210ENST00000540975 CTSOP43234 321 aaPredicted RBP12.5□□□□□ -0.41
YBX3-210ENST00000540975 TFIP11Q9UBB9 837 aaKnown RBP12.5□□□□□ -0.41
YBX3-210ENST00000540975 ATP9BO43861 1147 aa12.49□□□□□ -0.41
YBX3-210ENST00000540975 GNRH1P01148 92 aa12.49□□□□□ -0.41
YBX3-210ENST00000540975 EML3Q32P44 896 aa12.49□□□□□ -0.41
YBX3-210ENST00000540975 DEPDC4Q8N2C3 294 aa12.49□□□□□ -0.41
YBX3-210ENST00000540975 SOBPA7XYQ1 873 aa12.48□□□□□ -0.41
YBX3-210ENST00000540975 USP17L5A8MUK1 530 aa12.48□□□□□ -0.41
YBX3-210ENST00000540975 NCOA4Q13772 614 aa12.48□□□□□ -0.41
YBX3-210ENST00000540975 FIGNL2A6NMB9 653 aa12.47□□□□□ -0.41
YBX3-210ENST00000540975 MAN1A2O60476 641 aa12.47□□□□□ -0.41
YBX3-210ENST00000540975 PPP1R12CQ9BZL4 782 aa12.47□□□□□ -0.41
YBX3-210ENST00000540975 POLMQ9NP87 494 aaPredicted RBP12.47□□□□□ -0.41
YBX3-210ENST00000540975 PALM3A6NDB9 673 aaPredicted RBP12.46□□□□□ -0.41
YBX3-210ENST00000540975 MEN1O00255 615 aa12.46□□□□□ -0.41
YBX3-210ENST00000540975 PLEKHM2Q8IWE5 1019 aa12.46□□□□□ -0.41
YBX3-210ENST00000540975 ARHGEF10LQ9HCE6 1279 aa12.46□□□□□ -0.41
YBX3-210ENST00000540975 DNMT3LQ9UJW3 386 aa12.46□□□□□ -0.41
YBX3-210ENST00000540975 NOD1Q9Y239 953 aa12.46□□□□□ -0.41
YBX3-210ENST00000540975 RNF144AP50876 292 aaPredicted RBP12.45□□□□□ -0.42
YBX3-210ENST00000540975 CLN3Q13286 438 aa12.45□□□□□ -0.42
YBX3-210ENST00000540975 PCDHGA11Q9Y5H2 935 aa12.45□□□□□ -0.42
YBX3-210ENST00000540975 USP17L3A6NCW0 530 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 USP17L4A6NCW7 530 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 USP17L2Q6R6M4 530 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 USP17L1Q7RTZ2 530 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 XAGE2Q96GT9 111 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 NLRP3Q96P20 1036 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 RAB6BQ9NRW1 208 aa12.44□□□□□ -0.42
YBX3-210ENST00000540975 FOXD4L5Q5VV16 416 aaPredicted RBP12.43□□□□□ -0.42
YBX3-210ENST00000540975 RNF217Q8TC41 542 aa12.43□□□□□ -0.42
YBX3-210ENST00000540975 STAU1O95793 577 aaKnown RBP12.42□□□□□ -0.42
YBX3-210ENST00000540975 IL2RAP01589 272 aa12.42□□□□□ -0.42
YBX3-210ENST00000540975 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.42□□□□□ -0.42
YBX3-210ENST00000540975 ERICH6Q7L0X2 663 aa12.42□□□□□ -0.42
YBX3-210ENST00000540975 CNKSR1Q969H4 720 aa12.42□□□□□ -0.42
YBX3-210ENST00000540975 ESYT1Q9BSJ8 1104 aa12.42□□□□□ -0.42
YBX3-210ENST00000540975 MAFBQ9Y5Q3 323 aaPredicted RBP12.42□□□□□ -0.42
YBX3-210ENST00000540975 GPC1P35052 558 aa12.41□□□□□ -0.42
YBX3-210ENST00000540975 ESCO1Q5FWF5 840 aa12.41□□□□□ -0.42
YBX3-210ENST00000540975 ZNF775Q96BV0 537 aaPredicted RBP12.41□□□□□ -0.42
YBX3-210ENST00000540975 MKRN1Q9UHC7 482 aaKnown RBP12.41□□□□□ -0.42
YBX3-210ENST00000540975 GTF2IP78347 998 aa12.4□□□□□ -0.42
YBX3-210ENST00000540975 CENPCQ03188 943 aa12.4□□□□□ -0.42
YBX3-210ENST00000540975 ETNK1Q9HBU6 452 aa12.4□□□□□ -0.42
YBX3-210ENST00000540975 HRH3Q9Y5N1 445 aa12.4□□□□□ -0.42
YBX3-210ENST00000540975 ARID3CA6NKF2 412 aa12.39□□□□□ -0.43
YBX3-210ENST00000540975 SCNN1DP51172 638 aa12.39□□□□□ -0.43
YBX3-210ENST00000540975 GRIP2Q9C0E4 1043 aa12.39□□□□□ -0.43
YBX3-210ENST00000540975 ZBTB7BO15156 539 aaPredicted RBP12.38□□□□□ -0.43
YBX3-210ENST00000540975 LMOD1P29536 600 aaPredicted RBP12.38□□□□□ -0.43
YBX3-210ENST00000540975 TRIM50Q86XT4 487 aa12.38□□□□□ -0.43
YBX3-210ENST00000540975 INHAP05111 366 aa12.37□□□□□ -0.43
YBX3-210ENST00000540975 GDF10P55107 478 aa12.37□□□□□ -0.43
YBX3-210ENST00000540975 LYSMD3Q7Z3D4 306 aa12.37□□□□□ -0.43
YBX3-210ENST00000540975 PRICKLE2Q7Z3G6 844 aa12.37□□□□□ -0.43
YBX3-210ENST00000540975 TMEM229AB2RXF0 380 aa12.36□□□□□ -0.43
YBX3-210ENST00000540975 SLC27A3Q5K4L6 730 aa12.36□□□□□ -0.43
YBX3-210ENST00000540975 CFAP70Q5T0N1 1121 aa12.36□□□□□ -0.43
YBX3-210ENST00000540975 NXF1Q9UBU9 619 aaKnown RBP12.36□□□□□ -0.43
YBX3-210ENST00000540975 WASLO00401 505 aaPredicted RBP12.35□□□□□ -0.43
YBX3-210ENST00000540975 ATP1A2P50993 1020 aa12.35□□□□□ -0.43
YBX3-210ENST00000540975 CLDN10P78369 228 aa12.35□□□□□ -0.43
YBX3-210ENST00000540975 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
YBX3-210ENST00000540975 PTSQ03393 145 aa12.34□□□□□ -0.43
YBX3-210ENST00000540975 OGFOD1Q8N543 542 aa12.34□□□□□ -0.43
YBX3-210ENST00000540975 FHDC1Q9C0D6 1143 aaPredicted RBP12.34□□□□□ -0.43
YBX3-210ENST00000540975 DNAAF2Q9NVR5 837 aaKnown RBP12.34□□□□□ -0.43
YBX3-210ENST00000540975 TERTO14746 1132 aaKnown RBP12.33□□□□□ -0.44
YBX3-210ENST00000540975 PSME1Q06323 249 aa12.33□□□□□ -0.44
YBX3-210ENST00000540975 LARGE2Q8N3Y3 721 aa12.33□□□□□ -0.44
YBX3-210ENST00000540975 VRTNQ9H8Y1 702 aa12.33□□□□□ -0.44
YBX3-210ENST00000540975 TIMELESSQ9UNS1 1208 aa12.33□□□□□ -0.44
YBX3-210ENST00000540975 POU4F2Q12837 409 aa12.32□□□□□ -0.44
YBX3-210ENST00000540975 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.32□□□□□ -0.44
YBX3-210ENST00000540975 SLC4A9Q96Q91 983 aa12.32□□□□□ -0.44
YBX3-210ENST00000540975 ZSCAN10Q96SZ4 725 aaPredicted RBP12.32□□□□□ -0.44
YBX3-210ENST00000540975 SERTAD1Q9UHV2 236 aa12.32□□□□□ -0.44
YBX3-210ENST00000540975 KIAA1024Q9UPX6 916 aa12.32□□□□□ -0.44
YBX3-210ENST00000540975 RASA1P20936 1047 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms