RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 LBX1P52954 281 aa11.76□□□□□ -0.53
CHD4-208ENST00000540960 ARHGAP27Q6ZUM4 889 aa11.76□□□□□ -0.53
CHD4-208ENST00000540960 NLRP13Q86W25 1043 aa11.76□□□□□ -0.53
CHD4-208ENST00000540960 MKRN1Q9UHC7 482 aaKnown RBP11.76□□□□□ -0.53
CHD4-208ENST00000540960 TRAK1Q9UPV9 953 aa11.76□□□□□ -0.53
CHD4-208ENST00000540960 N4BP2Q86UW6 1770 aaPredicted RBP11.76□□□□□ -0.53
CHD4-208ENST00000540960 POLR3AO14802 1390 aaPredicted RBP11.76□□□□□ -0.53
CHD4-208ENST00000540960 EIF3AQ14152 1382 aaKnown RBP11.76□□□□□ -0.53
CHD4-208ENST00000540960 C9orf131Q5VYM1 1079 aa11.75□□□□□ -0.53
CHD4-208ENST00000540960 ABCC6O95255 1503 aa11.75□□□□□ -0.53
CHD4-208ENST00000540960 PKD1L3Q7Z443 1732 aa11.74□□□□□ -0.53
CHD4-208ENST00000540960 KIAA1551Q9HCM1 1747 aa11.74□□□□□ -0.53
CHD4-208ENST00000540960 CSB-PGBD3P0DP91 1061 aa11.74□□□□□ -0.53
CHD4-208ENST00000540960 DIEXFQ68CQ4 756 aaKnown RBP11.74□□□□□ -0.53
CHD4-208ENST00000540960 QRICH2Q9H0J4 1663 aa11.74□□□□□ -0.53
CHD4-208ENST00000540960 CTCFP49711 727 aaPredicted RBP11.73□□□□□ -0.53
CHD4-208ENST00000540960 PPIP5K1Q6PFW1 1433 aa11.73□□□□□ -0.53
CHD4-208ENST00000540960 C10orf71Q711Q0 1435 aa11.73□□□□□ -0.53
CHD4-208ENST00000540960 SIN3AQ96ST3 1273 aa11.73□□□□□ -0.53
CHD4-208ENST00000540960 TNRC6CQ9HCJ0 1690 aaKnown RBP11.73□□□□□ -0.53
CHD4-208ENST00000540960 BCS1LQ9Y276 419 aa11.73□□□□□ -0.53
CHD4-208ENST00000540960 PXDNLA1KZ92 1463 aa11.72□□□□□ -0.53
CHD4-208ENST00000540960 ERBB3P21860 1342 aa11.72□□□□□ -0.53
CHD4-208ENST00000540960 AMIGO3Q86WK7 504 aa11.72□□□□□ -0.53
CHD4-208ENST00000540960 USP54Q70EL1 1684 aa11.71□□□□□ -0.53
CHD4-208ENST00000540960 KDM2BQ8NHM5 1336 aa11.71□□□□□ -0.53
CHD4-208ENST00000540960 CCNL1Q9UK58 526 aaPredicted RBP11.71□□□□□ -0.53
CHD4-208ENST00000540960 A0A0G2JLW4 131 aa11.7□□□□□ -0.54
CHD4-208ENST00000540960 SLIT3O75094 1523 aa11.7□□□□□ -0.54
CHD4-208ENST00000540960 PRIM1P49642 420 aaKnown RBP11.69□□□□□ -0.54
CHD4-208ENST00000540960 SBF1O95248 1867 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 ADGRB1O14514 1584 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 PLEKHG3A1L390 1219 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 NLRP6P59044 892 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 SYTL4Q96C24 671 aaPredicted RBP11.68□□□□□ -0.54
CHD4-208ENST00000540960 STAC3Q96MF2 364 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 CDK19Q9BWU1 502 aa11.68□□□□□ -0.54
CHD4-208ENST00000540960 CPSF1Q10570 1443 aaKnown RBP11.68□□□□□ -0.54
CHD4-208ENST00000540960 NSD2O96028 1365 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 CCDC7Q96M83 1385 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 HSPA8P11142 646 aaKnown RBP11.67□□□□□ -0.54
CHD4-208ENST00000540960 ARHGEF25Q86VW2 580 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 AIDAQ96BJ3 306 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 WBP1LQ9NX94 342 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 C5P01031 1676 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 KIF13BQ9NQT8 1826 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 PLEKHG2Q9H7P9 1386 aa11.67□□□□□ -0.54
CHD4-208ENST00000540960 TOGARAM1Q9Y4F4 1720 aa11.66□□□□□ -0.54
CHD4-208ENST00000540960 BRCA1P38398 1863 aaKnown RBP11.66□□□□□ -0.54
CHD4-208ENST00000540960 VIRMAQ69YN4 1812 aaKnown RBP11.66□□□□□ -0.54
CHD4-208ENST00000540960 RNF181Q9P0P0 153 aa11.66□□□□□ -0.54
CHD4-208ENST00000540960 DOT1LQ8TEK3 1739 aa11.66□□□□□ -0.54
CHD4-208ENST00000540960 TAF1LQ8IZX4 1826 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 SOX12O15370 315 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 IL2RBP14784 551 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 DDX54Q8TDD1 881 aaKnown RBP11.65□□□□□ -0.54
CHD4-208ENST00000540960 CFAP44Q96MT7 982 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 CREBZFQ9NS37 354 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 CCDC61Q9Y6R9 512 aa11.65□□□□□ -0.54
CHD4-208ENST00000540960 FCHSD2O94868 740 aa11.64□□□□□ -0.55
CHD4-208ENST00000540960 VEGFBP49765 207 aa11.64□□□□□ -0.55
CHD4-208ENST00000540960 CNTNAP1P78357 1384 aa11.64□□□□□ -0.55
CHD4-208ENST00000540960 ARFGEF1Q9Y6D6 1849 aa11.63□□□□□ -0.55
CHD4-208ENST00000540960 DPEP1P16444 411 aa11.63□□□□□ -0.55
CHD4-208ENST00000540960 POTECB2RU33 542 aa11.62□□□□□ -0.55
CHD4-208ENST00000540960 PHF14O94880 888 aa11.62□□□□□ -0.55
CHD4-208ENST00000540960 VEGFAP15692 232 aaPredicted RBP11.62□□□□□ -0.55
CHD4-208ENST00000540960 NLRP2Q9NX02 1062 aa11.62□□□□□ -0.55
CHD4-208ENST00000540960 UBR3Q6ZT12 1888 aa11.61□□□□□ -0.55
CHD4-208ENST00000540960 KCNA3P22001 575 aa11.61□□□□□ -0.55
CHD4-208ENST00000540960 FLAD1Q8NFF5 587 aa11.61□□□□□ -0.55
CHD4-208ENST00000540960 L3MBTL2Q969R5 705 aa11.61□□□□□ -0.55
CHD4-208ENST00000540960 ANKRD36BQ8N2N9 1353 aa11.61□□□□□ -0.55
CHD4-208ENST00000540960 TGFB2P61812 414 aa11.6□□□□□ -0.55
CHD4-208ENST00000540960 EIF4G2P78344 907 aaKnown RBP eCLIP11.6□□□□□ -0.55
CHD4-208ENST00000540960 C4BP0C0L5 1744 aa11.58□□□□□ -0.56
CHD4-208ENST00000540960 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.58□□□□□ -0.56
CHD4-208ENST00000540960 MMP10P09238 476 aa11.58□□□□□ -0.56
CHD4-208ENST00000540960 POTEIP0CG38 1075 aa11.58□□□□□ -0.56
CHD4-208ENST00000540960 POTEJP0CG39 1038 aa11.58□□□□□ -0.56
CHD4-208ENST00000540960 GLTPD2A6NH11 291 aa11.57□□□□□ -0.56
CHD4-208ENST00000540960 CCDC88AQ3V6T2 1871 aa11.57□□□□□ -0.56
CHD4-208ENST00000540960 USP47Q96K76 1375 aa11.56□□□□□ -0.56
CHD4-208ENST00000540960 ADRA2BP18089 450 aa11.56□□□□□ -0.56
CHD4-208ENST00000540960 PRPF38BQ5VTL8 546 aaKnown RBP11.56□□□□□ -0.56
CHD4-208ENST00000540960 DCAF5Q96JK2 942 aa11.56□□□□□ -0.56
CHD4-208ENST00000540960 NFAT5O94916 1531 aa11.55□□□□□ -0.56
CHD4-208ENST00000540960 RASSF7Q02833 373 aa11.55□□□□□ -0.56
CHD4-208ENST00000540960 MCOLN1Q9GZU1 580 aa11.55□□□□□ -0.56
CHD4-208ENST00000540960 AK7Q96M32 723 aa11.54□□□□□ -0.56
CHD4-208ENST00000540960 SLC24A1O60721 1099 aa11.53□□□□□ -0.56
CHD4-208ENST00000540960 CHADLQ6NUI6 762 aa11.53□□□□□ -0.56
CHD4-208ENST00000540960 KCNH5Q8NCM2 988 aa11.53□□□□□ -0.56
CHD4-208ENST00000540960 TSKSQ9UJT2 592 aa11.53□□□□□ -0.56
CHD4-208ENST00000540960 CASP8AP2Q9UKL3 1982 aa11.53□□□□□ -0.56
CHD4-208ENST00000540960 CENPBP07199 599 aaPredicted RBP11.52□□□□□ -0.57
CHD4-208ENST00000540960 CABP2Q9NPB3 220 aa11.52□□□□□ -0.57
CHD4-208ENST00000540960 CABP1Q9NZU7 370 aa11.52□□□□□ -0.57
CHD4-208ENST00000540960 PASKQ96RG2 1323 aa11.52□□□□□ -0.57
CHD4-208ENST00000540960 ANKRD24Q8TF21 1146 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms