RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 BAG6P46379 1132 aa23.35■■□□□ 1.33
CLSTN3-210ENST00000540931 AMOTQ4VCS5 1084 aa23.35■■□□□ 1.33
CLSTN3-210ENST00000540931 PDE3BQ13370 1112 aa23.34■■□□□ 1.33
CLSTN3-210ENST00000540931 WDR43Q15061 677 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLSTN3-210ENST00000540931 SPG7Q9UQ90 795 aa23.34■■□□□ 1.33
CLSTN3-210ENST00000540931 DISP2A7MBM2 1401 aa23.33■■□□□ 1.33
CLSTN3-210ENST00000540931 PSDA5PKW4 1024 aaPredicted RBP23.33■■□□□ 1.33
CLSTN3-210ENST00000540931 SULT6B1Q6IMI4 303 aa23.33■■□□□ 1.33
CLSTN3-210ENST00000540931 PARP4Q9UKK3 1724 aaKnown RBP23.33■■□□□ 1.32
CLSTN3-210ENST00000540931 THSD7AQ9UPZ6 1657 aa23.32■■□□□ 1.32
CLSTN3-210ENST00000540931 U2AF1L5P0DN76 240 aaPredicted RBP23.32■■□□□ 1.32
CLSTN3-210ENST00000540931 U2AF1Q01081 240 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLSTN3-210ENST00000540931 RGPD1P0DJD0 1748 aa23.32■■□□□ 1.32
CLSTN3-210ENST00000540931 PLEKHO1Q53GL0 409 aaPredicted RBP23.31■■□□□ 1.32
CLSTN3-210ENST00000540931 ZCRB1Q8TBF4 217 aaKnown RBP23.31■■□□□ 1.32
CLSTN3-210ENST00000540931 OVOS2A0A0G2JMS6 1433 aa23.31■■□□□ 1.32
CLSTN3-210ENST00000540931 WNK3Q9BYP7 1800 aa23.31■■□□□ 1.32
CLSTN3-210ENST00000540931 CCER2I3L3R5 266 aa23.3■■□□□ 1.32
CLSTN3-210ENST00000540931 USHBP1Q8N6Y0 703 aa23.29■■□□□ 1.32
CLSTN3-210ENST00000540931 RGPD2P0DJD1 1756 aa23.29■■□□□ 1.32
CLSTN3-210ENST00000540931 TNS2Q63HR2 1409 aa23.28■■□□□ 1.32
CLSTN3-210ENST00000540931 EN1Q05925 392 aaPredicted RBP23.28■■□□□ 1.32
CLSTN3-210ENST00000540931 MRS2Q9HD23 443 aa23.28■■□□□ 1.32
CLSTN3-210ENST00000540931 PCDH11XQ9BZA7 1347 aa23.28■■□□□ 1.32
CLSTN3-210ENST00000540931 PCDH11YQ9BZA8 1340 aa23.28■■□□□ 1.32
CLSTN3-210ENST00000540931 FAM182BQ5T319 152 aa23.26■■□□□ 1.31
CLSTN3-210ENST00000540931 HSP90AB1P08238 724 aaKnown RBP23.25■■□□□ 1.31
CLSTN3-210ENST00000540931 MEGF6O75095 1541 aa23.24■■□□□ 1.31
CLSTN3-210ENST00000540931 HMOX1P09601 288 aa23.24■■□□□ 1.31
CLSTN3-210ENST00000540931 FAM196AQ6ZSG2 479 aa23.24■■□□□ 1.31
CLSTN3-210ENST00000540931 GAS2L2Q8NHY3 880 aa23.24■■□□□ 1.31
CLSTN3-210ENST00000540931 BCL9O00512 1426 aa23.23■■□□□ 1.31
CLSTN3-210ENST00000540931 IFNL2Q8IZJ0 200 aa23.22■■□□□ 1.31
CLSTN3-210ENST00000540931 RSPH6AQ9H0K4 717 aa23.22■■□□□ 1.31
CLSTN3-210ENST00000540931 MAPK8IP3Q9UPT6 1336 aa23.22■■□□□ 1.31
CLSTN3-210ENST00000540931 LRRC37A3O60309 1634 aa23.22■■□□□ 1.31
CLSTN3-210ENST00000540931 C1orf141Q5JVX7 400 aa23.21■■□□□ 1.31
CLSTN3-210ENST00000540931 AEBP1Q8IUX7 1158 aa23.21■■□□□ 1.31
CLSTN3-210ENST00000540931 PKD1L3Q7Z443 1732 aa23.2■■□□□ 1.3
CLSTN3-210ENST00000540931 PRKAR2BP31323 418 aa23.2■■□□□ 1.3
CLSTN3-210ENST00000540931 R3HDM1Q15032 1099 aaKnown RBP23.2■■□□□ 1.3
CLSTN3-210ENST00000540931 DDX54Q8TDD1 881 aaKnown RBP23.18■■□□□ 1.3
CLSTN3-210ENST00000540931 PNISRQ8TF01 805 aaKnown RBP23.18■■□□□ 1.3
CLSTN3-210ENST00000540931 TNS1Q9HBL0 1735 aaKnown RBP23.17■■□□□ 1.3
CLSTN3-210ENST00000540931 NKX1-1Q15270 411 aaPredicted RBP23.17■■□□□ 1.3
CLSTN3-210ENST00000540931 EZH2Q15910 746 aaKnown RBP23.17■■□□□ 1.3
CLSTN3-210ENST00000540931 AKAP4Q5JQC9 854 aa23.17■■□□□ 1.3
CLSTN3-210ENST00000540931 ZNF530Q6P9A1 599 aaPredicted RBP23.16■■□□□ 1.3
CLSTN3-210ENST00000540931 RUNDC1Q96C34 613 aa23.16■■□□□ 1.3
CLSTN3-210ENST00000540931 CAMKK2Q96RR4 588 aa23.16■■□□□ 1.3
CLSTN3-210ENST00000540931 ADAMTS8Q9UP79 889 aa23.16■■□□□ 1.3
CLSTN3-210ENST00000540931 HTATSF1O43719 755 aaKnown RBP23.15■■□□□ 1.3
CLSTN3-210ENST00000540931 MARCH10Q8NA82 808 aaPredicted RBP23.15■■□□□ 1.3
CLSTN3-210ENST00000540931 DCAF5Q96JK2 942 aa23.15■■□□□ 1.3
CLSTN3-210ENST00000540931 PHKG2P15735 406 aa23.14■■□□□ 1.29
CLSTN3-210ENST00000540931 TRIM37O94972 964 aa23.13■■□□□ 1.29
CLSTN3-210ENST00000540931 HMGB2P26583 209 aaKnown RBP23.13■■□□□ 1.29
CLSTN3-210ENST00000540931 NGEFQ8N5V2 710 aa23.13■■□□□ 1.29
CLSTN3-210ENST00000540931 PLEKHF1Q96S99 279 aa23.13■■□□□ 1.29
CLSTN3-210ENST00000540931 CYP27B1O15528 508 aa23.12■■□□□ 1.29
CLSTN3-210ENST00000540931 LMOD3Q0VAK6 560 aa23.12■■□□□ 1.29
CLSTN3-210ENST00000540931 GNAT3A8MTJ3 354 aa23.11■■□□□ 1.29
CLSTN3-210ENST00000540931 MTHFSDQ2M296 383 aaKnown RBP23.11■■□□□ 1.29
CLSTN3-210ENST00000540931 NCBP3Q53F19 620 aaKnown RBP23.11■■□□□ 1.29
CLSTN3-210ENST00000540931 RTF1Q92541 710 aaKnown RBP23.11■■□□□ 1.29
CLSTN3-210ENST00000540931 ERVV-2B6SEH9 535 aa23.1■■□□□ 1.29
CLSTN3-210ENST00000540931 MIER1Q8N108 512 aa23.1■■□□□ 1.29
CLSTN3-210ENST00000540931 NFE2L2Q16236 605 aa23.09■■□□□ 1.29
CLSTN3-210ENST00000540931 CCDC184Q52MB2 194 aa23.09■■□□□ 1.29
CLSTN3-210ENST00000540931 APBA3O96018 575 aa23.08■■□□□ 1.29
CLSTN3-210ENST00000540931 PHACTR3Q96KR7 559 aa23.08■■□□□ 1.29
CLSTN3-210ENST00000540931 MAP3K5Q99683 1374 aa23.08■■□□□ 1.29
CLSTN3-210ENST00000540931 BCL11BQ9C0K0 894 aaPredicted RBP23.07■■□□□ 1.28
CLSTN3-210ENST00000540931 SHANK3Q9BYB0 1731 aa23.07■■□□□ 1.28
CLSTN3-210ENST00000540931 FAM9BQ8IZU0 186 aa23.05■■□□□ 1.28
CLSTN3-210ENST00000540931 TMPOP42166 694 aaKnown RBP23.02■■□□□ 1.28
CLSTN3-210ENST00000540931 RIPK4P57078 832 aa23.02■■□□□ 1.28
CLSTN3-210ENST00000540931 CALD1Q05682 793 aaKnown RBP23.02■■□□□ 1.28
CLSTN3-210ENST00000540931 TMOD3Q9NYL9 352 aa23.02■■□□□ 1.28
CLSTN3-210ENST00000540931 RNMTO43148 476 aaKnown RBP23.01■■□□□ 1.27
CLSTN3-210ENST00000540931 CABP4P57796 275 aa23.01■■□□□ 1.27
CLSTN3-210ENST00000540931 TEFQ10587 303 aa23.01■■□□□ 1.27
CLSTN3-210ENST00000540931 MPRIPQ6WCQ1 1025 aa23■■□□□ 1.27
CLSTN3-210ENST00000540931 CCDC146Q8IYE0 955 aa23■■□□□ 1.27
CLSTN3-210ENST00000540931 SMARCC1Q92922 1105 aaPredicted RBP23■■□□□ 1.27
CLSTN3-210ENST00000540931 SYTL4Q96C24 671 aaPredicted RBP23■■□□□ 1.27
CLSTN3-210ENST00000540931 RREB1Q92766 1687 aa23■■□□□ 1.27
CLSTN3-210ENST00000540931 PRIM1P49642 420 aaKnown RBP22.99■■□□□ 1.27
CLSTN3-210ENST00000540931 NHSQ6T4R5 1651 aa22.99■■□□□ 1.27
CLSTN3-210ENST00000540931 CCDC27Q2M243 656 aa22.98■■□□□ 1.27
CLSTN3-210ENST00000540931 SLC52A2Q9HAB3 445 aa22.98■■□□□ 1.27
CLSTN3-210ENST00000540931 SBF2Q86WG5 1849 aa22.98■■□□□ 1.27
CLSTN3-210ENST00000540931 CEMIPQ8WUJ3 1361 aa22.98■■□□□ 1.27
CLSTN3-210ENST00000540931 APAF1O14727 1248 aa22.97■■□□□ 1.27
CLSTN3-210ENST00000540931 PLSCR1O15162 318 aa22.97■■□□□ 1.27
CLSTN3-210ENST00000540931 NBPF14Q5TI25 921 aa22.97■■□□□ 1.27
CLSTN3-210ENST00000540931 KAT6BQ8WYB5 2073 aa22.97■■□□□ 1.27
CLSTN3-210ENST00000540931 NUP188Q5SRE5 1749 aa22.96■■□□□ 1.27
CLSTN3-210ENST00000540931 SCN11AQ9UI33 1791 aa22.96■■□□□ 1.27
CLSTN3-210ENST00000540931 ACSBG1Q96GR2 724 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms