RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MBIPQ9NS73 344 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 ZCCHC11Q5TAX3 1644 aaKnown RBP15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 TRIM6-TRIM34B2RNG4 842 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 FYB1O15117 783 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 HCLS1P14317 486 aaPredicted RBP15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 UTP14CQ5TAP6 766 aaKnown RBP15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 FAM184AQ8NB25 1140 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 A0A1W2PP64 1363 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 ZSCAN20P17040 1043 aaPredicted RBP15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 NFE2L2Q16236 605 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 ADGRB2O60241 1585 aa15.55■□□□□ 0.08
SFSWAP-209ENST00000540469 GADD45BO75293 160 aaPredicted RBP15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 RILPL2Q969X0 211 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 GTF2E1P29083 439 aaPredicted RBP15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 MCM2P49736 904 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 UPF3BQ9BZI7 483 aaKnown RBP15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 ABCC4O15439 1325 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 ZBTB22O15209 634 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 PHACTR3Q96KR7 559 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 DIAPH3Q9NSV4 1193 aa15.54■□□□□ 0.08
SFSWAP-209ENST00000540469 C8orf58Q8NAV2 365 aa15.53■□□□□ 0.08
SFSWAP-209ENST00000540469 SPC24Q8NBT2 197 aa15.53■□□□□ 0.08
SFSWAP-209ENST00000540469 NAP1L2Q9ULW6 460 aaPredicted RBP15.53■□□□□ 0.08
SFSWAP-209ENST00000540469 USP48Q86UV5 1035 aa15.53■□□□□ 0.08
SFSWAP-209ENST00000540469 BRD1O95696 1058 aa15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 ZNF771Q7L3S4 317 aaPredicted RBP15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 GTPBP4Q9BZE4 634 aaKnown RBP15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 MED14O60244 1454 aa15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 TSHZ3Q63HK5 1081 aa15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 ZNF710Q8N1W2 664 aa15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 BCL2L12Q9HB09 334 aa15.52■□□□□ 0.08
SFSWAP-209ENST00000540469 TET3O43151 1660 aa15.52■□□□□ 0.07
SFSWAP-209ENST00000540469 SLC4A10Q6U841 1118 aa15.52■□□□□ 0.07
SFSWAP-209ENST00000540469 HMMRO75330 724 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 ANKRD44Q8N8A2 993 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 IFT57Q9NWB7 429 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 BRPF1P55201 1214 aaPredicted RBP15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 ATP2B3Q16720 1220 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 RPAP2Q8IXW5 612 aaPredicted RBP15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 RIMBP3CA6NJZ7 1639 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 RIMBP3BA6NNM3 1639 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 RIMBP3Q9UFD9 1639 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 QRICH2Q9H0J4 1663 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 KIF1BO60333 1816 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 ARHGAP31Q2M1Z3 1444 aa15.51■□□□□ 0.07
SFSWAP-209ENST00000540469 DCTN1Q14203 1278 aa15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 UVSSAQ2YD98 709 aa15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 WDR33Q9C0J8 1336 aaKnown RBP15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 FIBPO43427 364 aa15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 CCDC183Q5T5S1 534 aa15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 ABCC1P33527 1531 aa15.5■□□□□ 0.07
SFSWAP-209ENST00000540469 PTCH1Q13635 1447 aa15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 VGFO15240 615 aaPredicted RBP15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 U2AF2P26368 475 aaKnown RBP eCLIP15.49■□□□□ 0.075e-9■■■■■ 38.5
SFSWAP-209ENST00000540469 LMOD3Q0VAK6 560 aa15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 CFAP65Q6ZU64 1925 aaKnown RBP15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 FAM83GA6ND36 823 aa15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 PDIA4P13667 645 aaKnown RBP15.49■□□□□ 0.07
SFSWAP-209ENST00000540469 GOLGA6L6A8MZA4 724 aa15.48■□□□□ 0.07
SFSWAP-209ENST00000540469 LETM1O95202 739 aaPredicted RBP15.48■□□□□ 0.07
SFSWAP-209ENST00000540469 CEP85Q6P2H3 762 aa15.48■□□□□ 0.07
SFSWAP-209ENST00000540469 DRC7Q8IY82 874 aa15.48■□□□□ 0.07
SFSWAP-209ENST00000540469 KIF20AO95235 890 aa15.48■□□□□ 0.07
SFSWAP-209ENST00000540469 MEIS3Q99687 375 aa15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 RIOK3O14730 519 aaKnown RBP15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 FKBP5Q13451 457 aaPredicted RBP15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 CNPY2Q9Y2B0 182 aa15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 FANCAO15360 1455 aa15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 EXOC6BQ9Y2D4 811 aa15.47■□□□□ 0.07
SFSWAP-209ENST00000540469 PALD1Q9ULE6 856 aa15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 PIK3R4Q99570 1358 aa15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 GIMAP6Q6P9H5 292 aa15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 PUS7Q96PZ0 661 aaKnown RBP15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 CABP1Q9NZU7 370 aa15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 CHMP3Q9Y3E7 222 aa15.46■□□□□ 0.07
SFSWAP-209ENST00000540469 PDE1AP54750 535 aa15.46■□□□□ 0.06
SFSWAP-209ENST00000540469 KRT24Q2M2I5 525 aa15.45■□□□□ 0.06
SFSWAP-209ENST00000540469 ZFYVE16Q7Z3T8 1539 aa15.45■□□□□ 0.06
SFSWAP-209ENST00000540469 KDM4AO75164 1064 aa15.45■□□□□ 0.06
SFSWAP-209ENST00000540469 MX1P20591 662 aa15.45■□□□□ 0.06
SFSWAP-209ENST00000540469 PRAM1Q96QH2 718 aa15.45■□□□□ 0.06
SFSWAP-209ENST00000540469 HAP1P54257 671 aaPredicted RBP15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 INTS4Q96HW7 963 aaKnown RBP15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 ESYT1Q9BSJ8 1104 aa15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 MYO3AQ8NEV4 1616 aa15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 LARP6Q9BRS8 491 aaKnown RBP15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 CGNQ9P2M7 1197 aaKnown RBP15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 GTF2F1P35269 517 aaKnown RBP eCLIP15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 SRCIN1Q9C0H9 1055 aa15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 EMILIN1Q9Y6C2 1016 aa15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 UHRF1BP1LA0JNW5 1464 aa15.44■□□□□ 0.06
SFSWAP-209ENST00000540469 REREQ9P2R6 1566 aa15.43■□□□□ 0.06
SFSWAP-209ENST00000540469 CDK11BP21127 795 aaKnown RBP15.43■□□□□ 0.06
SFSWAP-209ENST00000540469 POLKQ9UBT6 870 aa15.43■□□□□ 0.06
SFSWAP-209ENST00000540469 CUL4AQ13619 759 aa15.43■□□□□ 0.06
SFSWAP-209ENST00000540469 PYCARDQ9ULZ3 195 aa15.43■□□□□ 0.06
SFSWAP-209ENST00000540469 MSH6P52701 1360 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 USP32Q8NFA0 1604 aa15.42■□□□□ 0.06
SFSWAP-209ENST00000540469 RPGRIP1LQ68CZ1 1315 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms