RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TERF2IPQ9NYB0 399 aa16.54■□□□□ 0.24
CLSTN3-209ENST00000539982 SHANK3Q9BYB0 1731 aa16.53■□□□□ 0.24
CLSTN3-209ENST00000539982 MSH5O43196 834 aa16.53■□□□□ 0.24
CLSTN3-209ENST00000539982 COL23A1Q86Y22 540 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-209ENST00000539982 ZCRB1Q8TBF4 217 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-209ENST00000539982 CCNL1Q9UK58 526 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-209ENST00000539982 CEP350Q5VT06 3117 aa16.52■□□□□ 0.24
CLSTN3-209ENST00000539982 TUBGCP6Q96RT7 1819 aa16.52■□□□□ 0.23
CLSTN3-209ENST00000539982 NSD2O96028 1365 aa16.51■□□□□ 0.23
CLSTN3-209ENST00000539982 LY75O60449 1722 aa16.51■□□□□ 0.23
CLSTN3-209ENST00000539982 PUS7Q96PZ0 661 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-209ENST00000539982 CARD11Q9BXL7 1154 aa16.5■□□□□ 0.23
CLSTN3-209ENST00000539982 A0A1W2PP64 1363 aa16.5■□□□□ 0.23
CLSTN3-209ENST00000539982 FAM208AQ9UK61 1670 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-209ENST00000539982 HOXC9P31274 260 aa16.49■□□□□ 0.23
CLSTN3-209ENST00000539982 MAP3K19Q56UN5 1328 aa16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 HMGB2P26583 209 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 AMPHP49418 695 aa16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 CD2APQ9Y5K6 639 aa16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 USP47Q96K76 1375 aa16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 DOT1LQ8TEK3 1739 aa16.48■□□□□ 0.23
CLSTN3-209ENST00000539982 ATP10DQ9P241 1426 aa16.47■□□□□ 0.23
CLSTN3-209ENST00000539982 MSL1Q68DK7 614 aa16.47■□□□□ 0.23
CLSTN3-209ENST00000539982 COG3Q96JB2 828 aa16.47■□□□□ 0.23
CLSTN3-209ENST00000539982 FBLN1P23142 703 aa16.46■□□□□ 0.23
CLSTN3-209ENST00000539982 FLAD1Q8NFF5 587 aa16.46■□□□□ 0.23
CLSTN3-209ENST00000539982 GPBP1L1Q9HC44 474 aaPredicted RBP16.46■□□□□ 0.23
CLSTN3-209ENST00000539982 CGNL1Q0VF96 1302 aa16.45■□□□□ 0.22
CLSTN3-209ENST00000539982 MEGF6O75095 1541 aa16.45■□□□□ 0.22
CLSTN3-209ENST00000539982 NBPF6Q5VWK0 638 aa16.44■□□□□ 0.22
CLSTN3-209ENST00000539982 NBPF4Q96M43 638 aa16.44■□□□□ 0.22
CLSTN3-209ENST00000539982 HSPA6P17066 643 aa16.43■□□□□ 0.22
CLSTN3-209ENST00000539982 RAPGEF4Q8WZA2 1011 aa16.42■□□□□ 0.22
CLSTN3-209ENST00000539982 RGPD2P0DJD1 1756 aa16.41■□□□□ 0.22
CLSTN3-209ENST00000539982 ADCY9O60503 1353 aa16.4■□□□□ 0.22
CLSTN3-209ENST00000539982 TATP17735 454 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-209ENST00000539982 USHBP1Q8N6Y0 703 aa16.4■□□□□ 0.22
CLSTN3-209ENST00000539982 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
CLSTN3-209ENST00000539982 MPRIPQ6WCQ1 1025 aa16.39■□□□□ 0.21
CLSTN3-209ENST00000539982 ZNF526Q8TF50 670 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-209ENST00000539982 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 C5P01031 1676 aa16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 SLC24A1O60721 1099 aa16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 RRS1Q15050 365 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 PCDH11XQ9BZA7 1347 aa16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 PCDH11YQ9BZA8 1340 aa16.38■□□□□ 0.21
CLSTN3-209ENST00000539982 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-209ENST00000539982 AK7Q96M32 723 aa16.37■□□□□ 0.21
CLSTN3-209ENST00000539982 TESK2Q96S53 571 aa16.37■□□□□ 0.21
CLSTN3-209ENST00000539982 FYB1O15117 783 aa16.36■□□□□ 0.21
CLSTN3-209ENST00000539982 IGSF1Q8N6C5 1336 aa16.36■□□□□ 0.21
CLSTN3-209ENST00000539982 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-209ENST00000539982 TAF1LQ8IZX4 1826 aa16.35■□□□□ 0.21
CLSTN3-209ENST00000539982 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
CLSTN3-209ENST00000539982 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
CLSTN3-209ENST00000539982 AMIGO3Q86WK7 504 aa16.35■□□□□ 0.21
CLSTN3-209ENST00000539982 GGNBP2Q9H3C7 697 aa16.35■□□□□ 0.21
CLSTN3-209ENST00000539982 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-209ENST00000539982 CYP27B1O15528 508 aa16.34■□□□□ 0.21
CLSTN3-209ENST00000539982 INSRP06213 1382 aa16.34■□□□□ 0.21
CLSTN3-209ENST00000539982 KIF3CO14782 793 aa16.33■□□□□ 0.2
CLSTN3-209ENST00000539982 PHF14O94880 888 aa16.33■□□□□ 0.2
CLSTN3-209ENST00000539982 PIGBQ92521 554 aa16.33■□□□□ 0.2
CLSTN3-209ENST00000539982 WWC3Q9ULE0 1092 aa16.33■□□□□ 0.2
CLSTN3-209ENST00000539982 C4BP0C0L5 1744 aa16.33■□□□□ 0.2
CLSTN3-209ENST00000539982 SSFA2P28290 1259 aa16.32■□□□□ 0.2
CLSTN3-209ENST00000539982 SMIM5Q71RC9 77 aa16.32■□□□□ 0.2
CLSTN3-209ENST00000539982 NSD3Q9BZ95 1437 aa16.32■□□□□ 0.2
CLSTN3-209ENST00000539982 NKX1-1Q15270 411 aaPredicted RBP16.31■□□□□ 0.2
CLSTN3-209ENST00000539982 KIF24Q5T7B8 1368 aa16.3■□□□□ 0.2
CLSTN3-209ENST00000539982 UBR3Q6ZT12 1888 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 FLT4P35916 1363 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 TONSLQ96HA7 1378 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 LOC102724428A0A0B4J2F2 783 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 APLP1P51693 650 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 SIK1P57059 783 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 ITGB4P16144 1822 aa16.29■□□□□ 0.2
CLSTN3-209ENST00000539982 TOGARAM1Q9Y4F4 1720 aa16.28■□□□□ 0.2
CLSTN3-209ENST00000539982 LINC00116Q8NCU8 138 aa16.28■□□□□ 0.2
CLSTN3-209ENST00000539982 SPG7Q9UQ90 795 aa16.27■□□□□ 0.2
CLSTN3-209ENST00000539982 GNPATO15228 680 aa16.26■□□□□ 0.19
CLSTN3-209ENST00000539982 TOMM70O94826 608 aa16.26■□□□□ 0.19
CLSTN3-209ENST00000539982 DNAJC5GQ8N7S2 189 aa16.26■□□□□ 0.19
CLSTN3-209ENST00000539982 MAP2P11137 1827 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 MMP10P09238 476 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 ATP6V1AP38606 617 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 TGFB2P61812 414 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 TMF1P82094 1093 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 ITPK1Q13572 414 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 TMOD3Q9NYL9 352 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 ASAP1Q9ULH1 1129 aa16.25■□□□□ 0.19
CLSTN3-209ENST00000539982 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLSTN3-209ENST00000539982 CICQ96RK0 1608 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-209ENST00000539982 PKD1L3Q7Z443 1732 aa16.23■□□□□ 0.19
CLSTN3-209ENST00000539982 NLGN1Q8N2Q7 840 aa16.23■□□□□ 0.19
CLSTN3-209ENST00000539982 BCS1LQ9Y276 419 aa16.23■□□□□ 0.19
CLSTN3-209ENST00000539982 EMILIN1Q9Y6C2 1016 aa16.23■□□□□ 0.19
CLSTN3-209ENST00000539982 NCAPD2Q15021 1401 aa16.22■□□□□ 0.19
CLSTN3-209ENST00000539982 A0A0G2JLW4 131 aa16.22■□□□□ 0.19
CLSTN3-209ENST00000539982 TRAPPC3LQ5T215 181 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms