RNA–Protein interactions for RNA: ENST00000539534.5

LMO3-221, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-221ENST00000539534 RAPGEF4Q8WZA2 1011 aa16.42■□□□□ 0.22
LMO3-221ENST00000539534 PHACTR3Q96KR7 559 aa16.42■□□□□ 0.22
LMO3-221ENST00000539534 CCDC9Q9Y3X0 531 aaKnown RBP16.42■□□□□ 0.22
LMO3-221ENST00000539534 TATP17735 454 aaPredicted RBP16.41■□□□□ 0.22
LMO3-221ENST00000539534 POTEAQ6S8J7 498 aa16.41■□□□□ 0.22
LMO3-221ENST00000539534 ZBED9Q6R2W3 1325 aa16.41■□□□□ 0.22
LMO3-221ENST00000539534 MEGF6O75095 1541 aa16.4■□□□□ 0.22
LMO3-221ENST00000539534 OVOS2A0A0G2JMS6 1433 aa16.4■□□□□ 0.22
LMO3-221ENST00000539534 CCDC27Q2M243 656 aa16.4■□□□□ 0.22
LMO3-221ENST00000539534 AMOTQ4VCS5 1084 aa16.4■□□□□ 0.22
LMO3-221ENST00000539534 PARP4Q9UKK3 1724 aaKnown RBP16.39■□□□□ 0.21
LMO3-221ENST00000539534 FAM98CQ17RN3 349 aaKnown RBP16.39■□□□□ 0.21
LMO3-221ENST00000539534 GLI3P10071 1580 aa16.38■□□□□ 0.21
LMO3-221ENST00000539534 RGPD2P0DJD1 1756 aa16.38■□□□□ 0.21
LMO3-221ENST00000539534 RXRBP28702 533 aa16.38■□□□□ 0.21
LMO3-221ENST00000539534 LMOD3Q0VAK6 560 aa16.38■□□□□ 0.21
LMO3-221ENST00000539534 PLEKHO1Q53GL0 409 aaPredicted RBP16.38■□□□□ 0.21
LMO3-221ENST00000539534 ZCRB1Q8TBF4 217 aaKnown RBP16.38■□□□□ 0.21
LMO3-221ENST00000539534 HNRNPUQ00839 825 aaKnown RBP eCLIP16.37■□□□□ 0.21
LMO3-221ENST00000539534 MTHFSDQ2M296 383 aaKnown RBP16.37■□□□□ 0.21
LMO3-221ENST00000539534 CCDC146Q8IYE0 955 aa16.37■□□□□ 0.21
LMO3-221ENST00000539534 GAS2L2Q8NHY3 880 aa16.37■□□□□ 0.21
LMO3-221ENST00000539534 SPG7Q9UQ90 795 aa16.37■□□□□ 0.21
LMO3-221ENST00000539534 EXOC5O00471 708 aa16.36■□□□□ 0.21
LMO3-221ENST00000539534 PDE3BQ13370 1112 aa16.36■□□□□ 0.21
LMO3-221ENST00000539534 HTATSF1O43719 755 aaKnown RBP16.35■□□□□ 0.21
LMO3-221ENST00000539534 NFE2L2Q16236 605 aa16.35■□□□□ 0.21
LMO3-221ENST00000539534 SEPT12Q8IYM1 358 aa16.35■□□□□ 0.21
LMO3-221ENST00000539534 PKD1L3Q7Z443 1732 aa16.35■□□□□ 0.21
LMO3-221ENST00000539534 WNK3Q9BYP7 1800 aa16.34■□□□□ 0.21
LMO3-221ENST00000539534 APAF1O14727 1248 aa16.34■□□□□ 0.21
LMO3-221ENST00000539534 CYP27B1O15528 508 aa16.34■□□□□ 0.21
LMO3-221ENST00000539534 CALD1Q05682 793 aaKnown RBP16.34■□□□□ 0.21
LMO3-221ENST00000539534 NKX1-1Q15270 411 aaPredicted RBP16.34■□□□□ 0.21
LMO3-221ENST00000539534 DDB1Q16531 1140 aa16.34■□□□□ 0.21
LMO3-221ENST00000539534 TMPOP42166 694 aaKnown RBP16.33■□□□□ 0.2
LMO3-221ENST00000539534 PHKG2P15735 406 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 AKAP4Q5JQC9 854 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 TNS2Q63HR2 1409 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 IFNL2Q8IZJ0 200 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 PCDH11XQ9BZA7 1347 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 PCDH11YQ9BZA8 1340 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 THSD7AQ9UPZ6 1657 aa16.32■□□□□ 0.2
LMO3-221ENST00000539534 ZNF530Q6P9A1 599 aaPredicted RBP16.31■□□□□ 0.2
LMO3-221ENST00000539534 MARCH10Q8NA82 808 aaPredicted RBP16.31■□□□□ 0.2
LMO3-221ENST00000539534 DLG5Q8TDM6 1919 aa16.31■□□□□ 0.2
LMO3-221ENST00000539534 IL16Q14005 1332 aa16.3■□□□□ 0.2
LMO3-221ENST00000539534 ZNF521Q96K83 1311 aa16.3■□□□□ 0.2
LMO3-221ENST00000539534 WDR63Q8IWG1 891 aa16.3■□□□□ 0.2
LMO3-221ENST00000539534 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
LMO3-221ENST00000539534 HSP90AB1P08238 724 aaKnown RBP16.29■□□□□ 0.2
LMO3-221ENST00000539534 RIPK4P57078 832 aa16.29■□□□□ 0.2
LMO3-221ENST00000539534 DDX54Q8TDD1 881 aaKnown RBP16.29■□□□□ 0.2
LMO3-221ENST00000539534 TRIM35Q9UPQ4 493 aa16.29■□□□□ 0.2
LMO3-221ENST00000539534 C1orf141Q5JVX7 400 aa16.28■□□□□ 0.2
LMO3-221ENST00000539534 RRP7AQ9Y3A4 280 aaKnown RBP16.28■□□□□ 0.2
LMO3-221ENST00000539534 BCL9O00512 1426 aa16.28■□□□□ 0.2
LMO3-221ENST00000539534 MAP3K5Q99683 1374 aa16.27■□□□□ 0.2
LMO3-221ENST00000539534 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
LMO3-221ENST00000539534 IL17REQ8NFR9 667 aa16.27■□□□□ 0.2
LMO3-221ENST00000539534 DCAF5Q96JK2 942 aa16.27■□□□□ 0.2
LMO3-221ENST00000539534 ADAMTS7Q9UKP4 1686 aa16.27■□□□□ 0.19
LMO3-221ENST00000539534 RGS12O14924 1447 aa16.27■□□□□ 0.19
LMO3-221ENST00000539534 CENPBP07199 599 aaPredicted RBP16.26■□□□□ 0.19
LMO3-221ENST00000539534 KRT27Q7Z3Y8 459 aa16.26■□□□□ 0.19
LMO3-221ENST00000539534 WWC1Q8IX03 1113 aa16.26■□□□□ 0.19
LMO3-221ENST00000539534 RTF1Q92541 710 aaKnown RBP16.26■□□□□ 0.19
LMO3-221ENST00000539534 YTHDC1Q96MU7 727 aaKnown RBP16.26■□□□□ 0.19
LMO3-221ENST00000539534 LRRC37A3O60309 1634 aa16.26■□□□□ 0.19
LMO3-221ENST00000539534 CEMIPQ8WUJ3 1361 aa16.26■□□□□ 0.19
LMO3-221ENST00000539534 A0A0G2JS52 829 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 RNMTO43148 476 aaKnown RBP16.25■□□□□ 0.19
LMO3-221ENST00000539534 MYT1Q01538 1121 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 GOLGA2Q08379 1002 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 NEUROD2Q15784 382 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 MPRIPQ6WCQ1 1025 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 LGR6Q9HBX8 967 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 BABAM1Q9NWV8 329 aa16.25■□□□□ 0.19
LMO3-221ENST00000539534 ERVV-2B6SEH9 535 aa16.24■□□□□ 0.19
LMO3-221ENST00000539534 E9PSI1 815 aa16.24■□□□□ 0.19
LMO3-221ENST00000539534 KDM6AO15550 1401 aaPredicted RBP16.23■□□□□ 0.19
LMO3-221ENST00000539534 SHANK3Q9BYB0 1731 aa16.22■□□□□ 0.19
LMO3-221ENST00000539534 DCTN1Q14203 1278 aa16.22■□□□□ 0.19
LMO3-221ENST00000539534 MCM10Q7L590 875 aa16.22■□□□□ 0.19
LMO3-221ENST00000539534 MYH16Q9H6N6 1097 aa16.22■□□□□ 0.19
LMO3-221ENST00000539534 SCN11AQ9UI33 1791 aa16.22■□□□□ 0.19
LMO3-221ENST00000539534 EP400Q96L91 3159 aa16.21■□□□□ 0.19
LMO3-221ENST00000539534 FAM196AQ6ZSG2 479 aa16.21■□□□□ 0.19
LMO3-221ENST00000539534 VIRMAQ69YN4 1812 aaKnown RBP16.21■□□□□ 0.19
LMO3-221ENST00000539534 SENP3-EIF4A1A0A087X0R7 540 aa16.2■□□□□ 0.18
LMO3-221ENST00000539534 GNAI1P63096 354 aa16.2■□□□□ 0.18
LMO3-221ENST00000539534 SLC52A2Q9HAB3 445 aa16.2■□□□□ 0.18
LMO3-221ENST00000539534 IFT57Q9NWB7 429 aa16.2■□□□□ 0.18
LMO3-221ENST00000539534 MRC1P22897 1456 aa16.2■□□□□ 0.18
LMO3-221ENST00000539534 ZNF853P0CG23 659 aa16.19■□□□□ 0.18
LMO3-221ENST00000539534 FAM182BQ5T319 152 aa16.19■□□□□ 0.18
LMO3-221ENST00000539534 THUMPD2Q9BTF0 503 aaKnown RBP16.19■□□□□ 0.18
LMO3-221ENST00000539534 SALL2Q9Y467 1007 aaPredicted RBP16.19■□□□□ 0.18
LMO3-221ENST00000539534 CT47B1P0C2W7 299 aaPredicted RBP16.18■□□□□ 0.18
LMO3-221ENST00000539534 PRIM1P49642 420 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms