RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CEP85Q6P2H3 762 aa13.76□□□□□ -0.21
SYNE1-237ENST00000539504 YTHDC2Q9H6S0 1430 aaKnown RBP13.76□□□□□ -0.21
SYNE1-237ENST00000539504 HMMRO75330 724 aa13.75□□□□□ -0.21
SYNE1-237ENST00000539504 NOL7Q9UMY1 257 aaKnown RBP13.75□□□□□ -0.21
SYNE1-237ENST00000539504 CAMSAP1Q5T5Y3 1602 aa13.75□□□□□ -0.21
SYNE1-237ENST00000539504 CYP2E1P05181 493 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-237ENST00000539504 TMEM63CQ9P1W3 806 aa13.75□□□□□ -0.21
SYNE1-237ENST00000539504 SOX12O15370 315 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 HAP1P54257 671 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-237ENST00000539504 DNTTIP2Q5QJE6 756 aaKnown RBP13.74□□□□□ -0.21
SYNE1-237ENST00000539504 FBXO31Q5XUX0 539 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-237ENST00000539504 TSHZ3Q63HK5 1081 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 ABCC3O15438 1527 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 UQCRHLA0A096LP55 91 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 UQCRHP07919 91 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 MCM10Q7L590 875 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.74□□□□□ -0.21
SYNE1-237ENST00000539504 ARHGEF28Q8N1W1 1705 aaKnown RBP13.74□□□□□ -0.21
SYNE1-237ENST00000539504 LRSAM1Q6UWE0 723 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 MPNDQ8N594 471 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 AK9Q5TCS8 1911 aa13.74□□□□□ -0.21
SYNE1-237ENST00000539504 TRIM6-TRIM34B2RNG4 842 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 NSFL1CQ9UNZ2 370 aaKnown RBP13.73□□□□□ -0.21
SYNE1-237ENST00000539504 ZDHHC9Q9Y397 364 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 HS1BP3Q53T59 392 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 SULT6B1Q6IMI4 303 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 RILPL2Q969X0 211 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 ANO2Q9NQ90 1003 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 CD163L1Q9NR16 1453 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 MCCP23508 829 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 TMX3Q96JJ7 454 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 CCDC39Q9UFE4 941 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 POGZQ7Z3K3 1410 aa13.73□□□□□ -0.21
SYNE1-237ENST00000539504 ZKSCAN5Q9Y2L8 839 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 NEXMIFQ5QGS0 1516 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 MBD3O95983 291 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 AEBP1Q8IUX7 1158 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 RIMS2Q9UQ26 1411 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 MIS18AQ9NYP9 233 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 EXOC6BQ9Y2D4 811 aa13.72□□□□□ -0.21
SYNE1-237ENST00000539504 CSPP1Q1MSJ5 1256 aa13.71□□□□□ -0.21
SYNE1-237ENST00000539504 F6X3S4 739 aa13.71□□□□□ -0.21
SYNE1-237ENST00000539504 MSH6P52701 1360 aa13.71□□□□□ -0.22
SYNE1-237ENST00000539504 GDPD2Q9HCC8 539 aa13.71□□□□□ -0.22
SYNE1-237ENST00000539504 NCKAP5LQ9HCH0 1330 aa13.7□□□□□ -0.22
SYNE1-237ENST00000539504 SYAP1Q96A49 352 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-237ENST00000539504 PDLIM2Q96JY6 352 aa13.7□□□□□ -0.22
SYNE1-237ENST00000539504 PTPRMP28827 1452 aa13.7□□□□□ -0.22
SYNE1-237ENST00000539504 ZNF500O60304 480 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-237ENST00000539504 PDE1AP54750 535 aa13.7□□□□□ -0.22
SYNE1-237ENST00000539504 TSPY26PQ9H489 355 aa13.7□□□□□ -0.22
SYNE1-237ENST00000539504 UPF3BQ9BZI7 483 aaKnown RBP13.69□□□□□ -0.22
SYNE1-237ENST00000539504 MLH3Q9UHC1 1453 aa13.69□□□□□ -0.22
SYNE1-237ENST00000539504 RTL1A6NKG5 1358 aa13.69□□□□□ -0.22
SYNE1-237ENST00000539504 PLCB2Q00722 1185 aa13.69□□□□□ -0.22
SYNE1-237ENST00000539504 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.68□□□□□ -0.22
SYNE1-237ENST00000539504 KIF24Q5T7B8 1368 aa13.68□□□□□ -0.22
SYNE1-237ENST00000539504 FRMPD1Q5SYB0 1578 aa13.68□□□□□ -0.22
SYNE1-237ENST00000539504 NUTM2FA1L443 756 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 TERF1P54274 439 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 TXNDC2Q86VQ3 553 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 MCM2P49736 904 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 NECTIN2Q92692 538 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 MAP7D2Q96T17 732 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 HECW2Q9P2P5 1572 aa13.67□□□□□ -0.22
SYNE1-237ENST00000539504 NUDT16Q96DE0 195 aaKnown RBP13.67□□□□□ -0.22
SYNE1-237ENST00000539504 RTF1Q92541 710 aaKnown RBP13.66□□□□□ -0.22
SYNE1-237ENST00000539504 PTPRCP08575 1304 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 ATP10DQ9P241 1426 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 WASLO00401 505 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-237ENST00000539504 MCM5P33992 734 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 G2E3Q7L622 706 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 TSPYL4Q9UJ04 414 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 PALD1Q9ULE6 856 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 KIAA2012Q0VF49 1180 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 ESYT1Q9BSJ8 1104 aa13.66□□□□□ -0.22
SYNE1-237ENST00000539504 PHF14O94880 888 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 GNAI2P04899 355 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 CHL1O00533 1208 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 BRD1O95696 1058 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 STK31Q9BXU1 1019 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 LRRCC1Q9C099 1032 aa13.65□□□□□ -0.22
SYNE1-237ENST00000539504 EIF4A2Q14240 407 aaKnown RBP13.65□□□□□ -0.23
SYNE1-237ENST00000539504 SASS6Q6UVJ0 657 aa13.65□□□□□ -0.23
SYNE1-237ENST00000539504 ARHGEF40Q8TER5 1519 aa13.64□□□□□ -0.23
SYNE1-237ENST00000539504 MX1P20591 662 aa13.64□□□□□ -0.23
SYNE1-237ENST00000539504 ZNF830Q96NB3 372 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-237ENST00000539504 GADD45BO75293 160 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-237ENST00000539504 CCT4P50991 539 aaKnown RBP13.63□□□□□ -0.23
SYNE1-237ENST00000539504 FKBP5Q13451 457 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-237ENST00000539504 CCDC61Q9Y6R9 512 aa13.63□□□□□ -0.23
SYNE1-237ENST00000539504 REREQ9P2R6 1566 aa13.63□□□□□ -0.23
SYNE1-237ENST00000539504 MLECQ14165 292 aa13.63□□□□□ -0.23
SYNE1-237ENST00000539504 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.63□□□□□ -0.23
SYNE1-237ENST00000539504 DYNC1I1O14576 645 aa13.62□□□□□ -0.23
SYNE1-237ENST00000539504 USP25Q9UHP3 1055 aa13.62□□□□□ -0.23
SYNE1-237ENST00000539504 USP48Q86UV5 1035 aa13.62□□□□□ -0.23
SYNE1-237ENST00000539504 PIK3C2BO00750 1634 aa13.62□□□□□ -0.23
SYNE1-237ENST00000539504 EDC4Q6P2E9 1401 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms