RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 POLD1P28340 1107 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 MARCH10Q8NA82 808 aaPredicted RBP10.06□□□□□ -0.8
LMO3-220ENST00000539232 NLGN2Q8NFZ4 835 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 ANKRD24Q8TF21 1146 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 COG3Q96JB2 828 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 PANK3Q9H999 370 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 NLRP2Q9NX02 1062 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 CRB1P82279 1406 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 NSD3Q9BZ95 1437 aa10.06□□□□□ -0.8
LMO3-220ENST00000539232 COL24A1Q17RW2 1714 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 HOXC9P31274 260 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 SLC16A10Q8TF71 515 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 IP6K1Q92551 441 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 CARD10Q9BWT7 1032 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 ERBB3P21860 1342 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 KIF7Q2M1P5 1343 aa10.05□□□□□ -0.8
LMO3-220ENST00000539232 TOMM70O94826 608 aa10.04□□□□□ -0.8
LMO3-220ENST00000539232 CDCA8Q53HL2 280 aa10.04□□□□□ -0.8
LMO3-220ENST00000539232 HSP90AB2PQ58FF8 381 aa10.04□□□□□ -0.8
LMO3-220ENST00000539232 EMILIN1Q9Y6C2 1016 aa10.04□□□□□ -0.8
LMO3-220ENST00000539232 COL18A1P39060 1754 aa10.03□□□□□ -0.8
LMO3-220ENST00000539232 BCL9O00512 1426 aa10.03□□□□□ -0.8
LMO3-220ENST00000539232 SLC24A1O60721 1099 aa10.03□□□□□ -0.8
LMO3-220ENST00000539232 TNNT2P45379 298 aaPredicted RBP10.03□□□□□ -0.8
LMO3-220ENST00000539232 USHBP1Q8N6Y0 703 aa10.03□□□□□ -0.8
LMO3-220ENST00000539232 AKAP12Q02952 1782 aa10.03□□□□□ -0.8
LMO3-220ENST00000539232 MON2Q7Z3U7 1717 aa10.02□□□□□ -0.8
LMO3-220ENST00000539232 ZEB1P37275 1124 aaPredicted RBP10.02□□□□□ -0.81
LMO3-220ENST00000539232 NBPF6Q5VWK0 638 aa10.02□□□□□ -0.81
LMO3-220ENST00000539232 NBPF4Q96M43 638 aa10.02□□□□□ -0.81
LMO3-220ENST00000539232 PCNTO95613 3336 aa10.01□□□□□ -0.81
LMO3-220ENST00000539232 AMPHP49418 695 aa10.01□□□□□ -0.81
LMO3-220ENST00000539232 DDB1Q16531 1140 aa10.01□□□□□ -0.81
LMO3-220ENST00000539232 LRRC37A3O60309 1634 aa10□□□□□ -0.81
LMO3-220ENST00000539232 PAPPAQ13219 1627 aa10□□□□□ -0.81
LMO3-220ENST00000539232 POLKQ9UBT6 870 aa10□□□□□ -0.81
LMO3-220ENST00000539232 WASHC2AQ641Q2 1341 aa10□□□□□ -0.81
LMO3-220ENST00000539232 QSER1Q2KHR3 1735 aa9.99□□□□□ -0.81
LMO3-220ENST00000539232 PPM1GO15355 546 aaPredicted RBP9.99□□□□□ -0.81
LMO3-220ENST00000539232 PER1O15534 1290 aaPredicted RBP9.98□□□□□ -0.81
LMO3-220ENST00000539232 IL2RBP14784 551 aa9.98□□□□□ -0.81
LMO3-220ENST00000539232 AMER1Q5JTC6 1135 aaPredicted RBP9.98□□□□□ -0.81
LMO3-220ENST00000539232 ACSBG1Q96GR2 724 aa9.98□□□□□ -0.81
LMO3-220ENST00000539232 CGNL1Q0VF96 1302 aa9.98□□□□□ -0.81
LMO3-220ENST00000539232 CCDC7Q96M83 1385 aa9.98□□□□□ -0.81
LMO3-220ENST00000539232 EXOC5O00471 708 aa9.97□□□□□ -0.81
LMO3-220ENST00000539232 HSPA1AP0DMV8 641 aaKnown RBP9.97□□□□□ -0.81
LMO3-220ENST00000539232 HSPA1BP0DMV9 641 aaKnown RBP9.97□□□□□ -0.81
LMO3-220ENST00000539232 HTRA3P83110 453 aa9.97□□□□□ -0.81
LMO3-220ENST00000539232 CNGB1Q14028 1251 aaPredicted RBP9.97□□□□□ -0.81
LMO3-220ENST00000539232 TNS2Q63HR2 1409 aa9.97□□□□□ -0.81
LMO3-220ENST00000539232 ZNF827Q17R98 1081 aa9.96□□□□□ -0.82
LMO3-220ENST00000539232 RBM46Q8TBY0 533 aaKnown RBP9.96□□□□□ -0.82
LMO3-220ENST00000539232 DDX54Q8TDD1 881 aaKnown RBP9.96□□□□□ -0.82
LMO3-220ENST00000539232 CDCA7Q9BWT1 371 aaPredicted RBP9.96□□□□□ -0.82
LMO3-220ENST00000539232 INSRP06213 1382 aa9.96□□□□□ -0.82
LMO3-220ENST00000539232 MEGF6O75095 1541 aa9.96□□□□□ -0.82
LMO3-220ENST00000539232 USP54Q70EL1 1684 aa9.96□□□□□ -0.82
LMO3-220ENST00000539232 FAM161AQ3B820 660 aa9.95□□□□□ -0.82
LMO3-220ENST00000539232 ABCC6O95255 1503 aa9.94□□□□□ -0.82
LMO3-220ENST00000539232 RTL1A6NKG5 1358 aa9.94□□□□□ -0.82
LMO3-220ENST00000539232 FLT4P35916 1363 aa9.94□□□□□ -0.82
LMO3-220ENST00000539232 FSTL1Q12841 308 aa9.94□□□□□ -0.82
LMO3-220ENST00000539232 EIF4A2Q14240 407 aaKnown RBP9.94□□□□□ -0.82
LMO3-220ENST00000539232 CC2D1BQ5T0F9 858 aaKnown RBP9.94□□□□□ -0.82
LMO3-220ENST00000539232 EYA1Q99502 592 aa9.94□□□□□ -0.82
LMO3-220ENST00000539232 KCNQ4P56696 695 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 MORC1Q86VD1 984 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 AKT1S1Q96B36 256 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 KNSTRNQ9Y448 316 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 CD2APQ9Y5K6 639 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 WNK3Q9BYP7 1800 aa9.93□□□□□ -0.82
LMO3-220ENST00000539232 PNPLA7Q6ZV29 1317 aa9.92□□□□□ -0.82
LMO3-220ENST00000539232 CYP27B1O15528 508 aa9.92□□□□□ -0.82
LMO3-220ENST00000539232 AEBP1Q8IUX7 1158 aa9.92□□□□□ -0.82
LMO3-220ENST00000539232 ZCRB1Q8TBF4 217 aaKnown RBP9.92□□□□□ -0.82
LMO3-220ENST00000539232 NHSQ6T4R5 1651 aa9.92□□□□□ -0.82
LMO3-220ENST00000539232 PRIM1P49642 420 aaKnown RBP9.91□□□□□ -0.82
LMO3-220ENST00000539232 C16orf71Q8IYS4 520 aaPredicted RBP9.91□□□□□ -0.82
LMO3-220ENST00000539232 NMRK2Q9NPI5 230 aa9.9□□□□□ -0.82
LMO3-220ENST00000539232 LRRC4BQ9NT99 713 aa9.9□□□□□ -0.82
LMO3-220ENST00000539232 TUBGCP6Q96RT7 1819 aa9.9□□□□□ -0.82
LMO3-220ENST00000539232 RGPD5Q99666 1765 aa9.9□□□□□ -0.82
LMO3-220ENST00000539232 NSD2O96028 1365 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 IL13P35225 146 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 RAPGEF4Q8WZA2 1011 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 TFCP2L1Q9NZI6 479 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 KAT6BQ8WYB5 2073 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 BTAF1O14981 1849 aa9.89□□□□□ -0.83
LMO3-220ENST00000539232 KIF24Q5T7B8 1368 aa9.88□□□□□ -0.83
LMO3-220ENST00000539232 FAM208AQ9UK61 1670 aaKnown RBP9.88□□□□□ -0.83
LMO3-220ENST00000539232 TATP17735 454 aaPredicted RBP9.88□□□□□ -0.83
LMO3-220ENST00000539232 MTHFSP49914 203 aa9.88□□□□□ -0.83
LMO3-220ENST00000539232 MLLT1Q03111 559 aaPredicted RBP9.88□□□□□ -0.83
LMO3-220ENST00000539232 NCAPD2Q15021 1401 aa9.88□□□□□ -0.83
LMO3-220ENST00000539232 CICQ96RK0 1608 aaPredicted RBP9.87□□□□□ -0.83
LMO3-220ENST00000539232 SLC27A3Q5K4L6 730 aa9.87□□□□□ -0.83
LMO3-220ENST00000539232 SYTL4Q96C24 671 aaPredicted RBP9.87□□□□□ -0.83
LMO3-220ENST00000539232 SMG6Q86US8 1419 aaKnown RBP9.87□□□□□ -0.83
LMO3-220ENST00000539232 IGSF1Q8N6C5 1336 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms