RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 NUTM2AQ8IVF1 878 aaPredicted RBP8.6□□□□□ -1.03
USP28-207ENST00000538475 NUDT12Q9BQG2 462 aa8.6□□□□□ -1.03
USP28-207ENST00000538475 PARD3Q8TEW0 1356 aa8.6□□□□□ -1.03
USP28-207ENST00000538475 NINLQ9Y2I6 1382 aa8.6□□□□□ -1.03
USP28-207ENST00000538475 ITSN2Q9NZM3 1697 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 NRG2O14511 850 aaPredicted RBP8.59□□□□□ -1.03
USP28-207ENST00000538475 FOXC1Q12948 553 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 NEUROD2Q15784 382 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 NBPF8Q3BBV2 869 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 MAP7D2Q96T17 732 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 POLR3EQ9NVU0 708 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 CROCC2H7BZ55 1655 aa8.59□□□□□ -1.03
USP28-207ENST00000538475 NESP48681 1621 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 FSD2A1L4K1 749 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 TNFRSF10AO00220 468 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 FRAT2O75474 233 aaPredicted RBP8.58□□□□□ -1.04
USP28-207ENST00000538475 PTMSP20962 102 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 CLK2P49760 499 aaKnown RBP8.58□□□□□ -1.04
USP28-207ENST00000538475 PRPF38BQ5VTL8 546 aaKnown RBP8.58□□□□□ -1.04
USP28-207ENST00000538475 NGEFQ8N5V2 710 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 CABLES1Q8TDN4 633 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 FAM117AQ9C073 453 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 PDCL3Q9H2J4 239 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 LIMD1Q9UGP4 676 aa8.58□□□□□ -1.04
USP28-207ENST00000538475 MAPK8IP3Q9UPT6 1336 aa8.57□□□□□ -1.04
USP28-207ENST00000538475 KIAA1107Q9UPP5 1409 aa8.57□□□□□ -1.04
USP28-207ENST00000538475 C8orf34Q49A92 452 aa8.57□□□□□ -1.04
USP28-207ENST00000538475 DCAF11Q8TEB1 546 aa8.57□□□□□ -1.04
USP28-207ENST00000538475 TSC1Q92574 1164 aa8.57□□□□□ -1.04
USP28-207ENST00000538475 CCNYL3P0C7X3 344 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 MRE11P49959 708 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 TRIM32Q13049 653 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 CADPSQ9ULU8 1353 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 ADGRL2O95490 1459 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 CAMSAP2Q08AD1 1489 aa8.56□□□□□ -1.04
USP28-207ENST00000538475 DAPK1P53355 1430 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 KDM5DQ9BY66 1539 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 GOLGA6L3A6NEY3 463 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 CALD1Q05682 793 aaKnown RBP8.55□□□□□ -1.04
USP28-207ENST00000538475 PTPRNQ16849 979 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 DESI1Q6ICB0 168 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 TRIM67Q6ZTA4 783 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 MTERF4Q7Z6M4 381 aaKnown RBP8.55□□□□□ -1.04
USP28-207ENST00000538475 RRAGDQ9NQL2 400 aaPredicted RBP8.55□□□□□ -1.04
USP28-207ENST00000538475 ANKRD30AQ9BXX3 1397 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 CEP170Q5SW79 1584 aa8.55□□□□□ -1.04
USP28-207ENST00000538475 PZPP20742 1482 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 CFAP99D6REC4 459 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 GDF9O60383 454 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PRR20EP86478 221 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PRR20CP86479 221 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PRR20DP86480 221 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PRR20BP86481 221 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PRR20AP86496 221 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 QPCTQ16769 361 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 TUSC1Q2TAM9 212 aa8.54□□□□□ -1.04
USP28-207ENST00000538475 PLXNC1O60486 1568 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 CTHP32929 405 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 SKIV2LQ15477 1246 aaKnown RBP8.53□□□□□ -1.04
USP28-207ENST00000538475 SH3D19Q5HYK7 790 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 TRAF7Q6Q0C0 670 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 NAP1L5Q96NT1 182 aaPredicted RBP8.53□□□□□ -1.04
USP28-207ENST00000538475 CRBNQ96SW2 442 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 TRPM1Q7Z4N2 1603 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 EPRSP07814 1512 aaKnown RBP8.53□□□□□ -1.04
USP28-207ENST00000538475 MAGI3Q5TCQ9 1506 aa8.53□□□□□ -1.04
USP28-207ENST00000538475 EIF2AK4Q9P2K8 1649 aaKnown RBP8.52□□□□□ -1.05
USP28-207ENST00000538475 LILRB3O75022 631 aa8.52□□□□□ -1.05
USP28-207ENST00000538475 PKDCCQ504Y2 493 aa8.52□□□□□ -1.05
USP28-207ENST00000538475 PTCRAQ6ISU1 281 aaPredicted RBP8.52□□□□□ -1.05
USP28-207ENST00000538475 RRP7BPQ9NSQ0 103 aa8.52□□□□□ -1.05
USP28-207ENST00000538475 EVA1BQ9NVM1 165 aa8.52□□□□□ -1.05
USP28-207ENST00000538475 PKD2L1Q9P0L9 805 aa8.52□□□□□ -1.05
USP28-207ENST00000538475 ADCY10Q96PN6 1610 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 ZNF608Q9ULD9 1512 aaPredicted RBP8.51□□□□□ -1.05
USP28-207ENST00000538475 PLEKHG3A1L390 1219 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 LCE2BO14633 110 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 KCNH2Q12809 1159 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 LYPD8Q6UX82 237 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 CYP4X1Q8N118 509 aa8.51□□□□□ -1.05
USP28-207ENST00000538475 HELBQ8NG08 1087 aaPredicted RBP8.51□□□□□ -1.05
USP28-207ENST00000538475 UPF2Q9HAU5 1272 aaKnown RBP8.51□□□□□ -1.05
USP28-207ENST00000538475 WDR62O43379 1518 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 FAM187AA6NFU0 413 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 ABCC5O15440 1437 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 XRCC6P12956 609 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP28-207ENST00000538475 NCLP19338 710 aaKnown RBP8.5□□□□□ -1.05
USP28-207ENST00000538475 SKOR2Q2VWA4 1001 aaPredicted RBP8.5□□□□□ -1.05
USP28-207ENST00000538475 UNC93B1Q9H1C4 597 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 ANTXR1Q9H6X2 564 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 CGNL1Q0VF96 1302 aa8.5□□□□□ -1.05
USP28-207ENST00000538475 TTC24A2A3L6 582 aaPredicted RBP8.49□□□□□ -1.05
USP28-207ENST00000538475 ESPNB1AK53 854 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 WNT7AO00755 349 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 BRPF1P55201 1214 aaPredicted RBP8.49□□□□□ -1.05
USP28-207ENST00000538475 WNT7BP56706 349 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 MYH16Q9H6N6 1097 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 PODXL2Q9NZ53 605 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 TOPBP1Q92547 1522 aa8.49□□□□□ -1.05
USP28-207ENST00000538475 ABCC2Q92887 1545 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms