RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 SFI1A8K8P3 1242 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 ERVH48-1M5A8F1 160 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 FSHRP23945 695 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 FAM69CQ0P6D2 419 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 CLP1Q92989 425 aaKnown RBP9.42□□□□□ -0.9
PRKDC-208ENST00000536710 PCDHGA11Q9Y5H2 935 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 TLL2Q9Y6L7 1015 aa9.42□□□□□ -0.9
PRKDC-208ENST00000536710 ATP2B4P23634 1241 aa9.41□□□□□ -0.9
PRKDC-208ENST00000536710 SWI5Q1ZZU3 235 aa9.41□□□□□ -0.9
PRKDC-208ENST00000536710 LIAT1Q6ZQX7 453 aa9.41□□□□□ -0.9
PRKDC-208ENST00000536710 CCER1Q8TC90 406 aaPredicted RBP9.41□□□□□ -0.9
PRKDC-208ENST00000536710 SSFA2P28290 1259 aa9.4□□□□□ -0.9
PRKDC-208ENST00000536710 SCTRP47872 440 aa9.4□□□□□ -0.9
PRKDC-208ENST00000536710 MFAP1P55081 439 aaKnown RBP9.4□□□□□ -0.9
PRKDC-208ENST00000536710 HINFPQ9BQA5 517 aa9.4□□□□□ -0.9
PRKDC-208ENST00000536710 PRMT3O60678 531 aa9.39□□□□□ -0.91
PRKDC-208ENST00000536710 CYLDQ9NQC7 956 aa9.39□□□□□ -0.91
PRKDC-208ENST00000536710 SLAIN2Q9P270 581 aa9.39□□□□□ -0.91
PRKDC-208ENST00000536710 LGR5O75473 907 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 DKK1O94907 266 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 SLC19A1P41440 591 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 DHX9Q08211 1270 aaKnown RBP9.38□□□□□ -0.91
PRKDC-208ENST00000536710 CC2D2BQ6DHV5 1058 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 PHLDB3Q6NSJ2 640 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 TRIM52Q96A61 297 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 CDK15Q96Q40 435 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 TMPRSS4Q9NRS4 437 aa9.38□□□□□ -0.91
PRKDC-208ENST00000536710 ARID4AP29374 1257 aaPredicted RBP9.37□□□□□ -0.91
PRKDC-208ENST00000536710 PRIMPOLQ96LW4 560 aa9.37□□□□□ -0.91
PRKDC-208ENST00000536710 GRM5P41594 1212 aa9.36□□□□□ -0.91
PRKDC-208ENST00000536710 NPM2Q86SE8 214 aaKnown RBP9.36□□□□□ -0.91
PRKDC-208ENST00000536710 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
PRKDC-208ENST00000536710 MRGPRX2Q96LB1 330 aa9.36□□□□□ -0.91
PRKDC-208ENST00000536710 GNEQ9Y223 722 aaKnown RBP9.36□□□□□ -0.91
PRKDC-208ENST00000536710 ADH1CP00326 375 aa9.35□□□□□ -0.91
PRKDC-208ENST00000536710 ERVK-9P63128 1117 aa9.35□□□□□ -0.91
PRKDC-208ENST00000536710 SND1Q7KZF4 910 aaKnown RBP eCLIP9.35□□□□□ -0.914e-7■□□□□ 8.9
PRKDC-208ENST00000536710 CCDC116Q8IYX3 515 aa9.35□□□□□ -0.91
PRKDC-208ENST00000536710 ZNF784Q8NCA9 323 aaPredicted RBP9.35□□□□□ -0.91
PRKDC-208ENST00000536710 TSEN2Q8NCE0 465 aaKnown RBP9.35□□□□□ -0.91
PRKDC-208ENST00000536710 WNT7AO00755 349 aa9.34□□□□□ -0.91
PRKDC-208ENST00000536710 SIAH2O43255 324 aa9.34□□□□□ -0.91
PRKDC-208ENST00000536710 CCDC27Q2M243 656 aa9.34□□□□□ -0.91
PRKDC-208ENST00000536710 PPP1R26Q5T8A7 1209 aaPredicted RBP9.34□□□□□ -0.91
PRKDC-208ENST00000536710 TXNDC2Q86VQ3 553 aa9.34□□□□□ -0.91
PRKDC-208ENST00000536710 EMID1Q96A84 441 aaPredicted RBP9.34□□□□□ -0.91
PRKDC-208ENST00000536710 SCNN1AP37088 669 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 RANGAP1P46060 587 aaPredicted RBP9.33□□□□□ -0.92
PRKDC-208ENST00000536710 MYT1Q01538 1121 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 MMRN1Q13201 1228 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 NR5A1Q13285 461 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 MPNDQ8N594 471 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 OSBPL3Q9H4L5 887 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 MTMR7Q9Y216 660 aa9.33□□□□□ -0.92
PRKDC-208ENST00000536710 FOXC1Q12948 553 aa9.32□□□□□ -0.92
PRKDC-208ENST00000536710 ZNF358Q9NW07 568 aa9.32□□□□□ -0.92
PRKDC-208ENST00000536710 CXXC1Q9P0U4 656 aaPredicted RBP9.32□□□□□ -0.92
PRKDC-208ENST00000536710 STAU1O95793 577 aaKnown RBP9.31□□□□□ -0.92
PRKDC-208ENST00000536710 ALDH1A1P00352 501 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 SERPINB4P48594 390 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 GDF10P55107 478 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 ZNF697Q5TEC3 545 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 SPRYD7Q5W111 196 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 PGPEP1Q9NXJ5 209 aa9.31□□□□□ -0.92
PRKDC-208ENST00000536710 BACH1O14867 736 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 NR3C2P08235 984 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 OCLNQ16625 522 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 CYP2U1Q7Z449 544 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 MKNK1Q9BUB5 465 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 SERTAD1Q9UHV2 236 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 WASF2Q9Y6W5 498 aa9.3□□□□□ -0.92
PRKDC-208ENST00000536710 TMEM229AB2RXF0 380 aa9.29□□□□□ -0.92
PRKDC-208ENST00000536710 M0R2N6 131 aa9.29□□□□□ -0.92
PRKDC-208ENST00000536710 ABL1P00519 1130 aa9.29□□□□□ -0.92
PRKDC-208ENST00000536710 EMILIN1Q9Y6C2 1016 aa9.29□□□□□ -0.92
PRKDC-208ENST00000536710 LILRA1O75019 489 aa9.28□□□□□ -0.92
PRKDC-208ENST00000536710 SCNN1DP51172 638 aa9.28□□□□□ -0.92
PRKDC-208ENST00000536710 IFFO2Q5TF58 517 aa9.28□□□□□ -0.92
PRKDC-208ENST00000536710 RGS22Q8NE09 1264 aa9.28□□□□□ -0.92
PRKDC-208ENST00000536710 C1orf216Q8TAB5 229 aa9.28□□□□□ -0.92
PRKDC-208ENST00000536710 BIN2Q9UBW5 565 aaPredicted RBP9.28□□□□□ -0.92
PRKDC-208ENST00000536710 INHAP05111 366 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 NNTQ13423 1086 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 FOXD4L5Q5VV16 416 aaPredicted RBP9.27□□□□□ -0.93
PRKDC-208ENST00000536710 ZNF598Q86UK7 904 aaKnown RBP9.27□□□□□ -0.93
PRKDC-208ENST00000536710 TNS4Q8IZW8 715 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 GAS2L2Q8NHY3 880 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 FOXD4L4Q8WXT5 416 aaPredicted RBP9.27□□□□□ -0.93
PRKDC-208ENST00000536710 ETNK1Q9HBU6 452 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 RAB6BQ9NRW1 208 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 PLA2G2EQ9NZK7 142 aa9.27□□□□□ -0.93
PRKDC-208ENST00000536710 GNRH1P01148 92 aa9.26□□□□□ -0.93
PRKDC-208ENST00000536710 WEE1P30291 646 aa9.26□□□□□ -0.93
PRKDC-208ENST00000536710 ADD1P35611 737 aaKnown RBP9.26□□□□□ -0.93
PRKDC-208ENST00000536710 ESCO1Q5FWF5 840 aa9.26□□□□□ -0.93
PRKDC-208ENST00000536710 TAS1R3Q7RTX0 852 aa9.26□□□□□ -0.93
PRKDC-208ENST00000536710 SCG3Q8WXD2 468 aaKnown RBP9.26□□□□□ -0.93
PRKDC-208ENST00000536710 SOWAHDA6NJG2 315 aa9.25□□□□□ -0.93
PRKDC-208ENST00000536710 CHMP7Q8WUX9 453 aaPredicted RBP9.25□□□□□ -0.93
PRKDC-208ENST00000536710 VTI1AQ96AJ9 217 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms