RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ANP32CO43423 234 aa16.19■□□□□ 0.18
CHD4-203ENST00000535717 MARCH10Q8NA82 808 aaPredicted RBP16.18■□□□□ 0.18
CHD4-203ENST00000535717 ZCRB1Q8TBF4 217 aaKnown RBP16.18■□□□□ 0.18
CHD4-203ENST00000535717 HMOX1P09601 288 aa16.17■□□□□ 0.18
CHD4-203ENST00000535717 NUDCQ9Y266 331 aa16.17■□□□□ 0.18
CHD4-203ENST00000535717 DDX54Q8TDD1 881 aaKnown RBP16.15■□□□□ 0.18
CHD4-203ENST00000535717 SHANK3Q9BYB0 1731 aa16.15■□□□□ 0.18
CHD4-203ENST00000535717 PKD1L3Q7Z443 1732 aa16.14■□□□□ 0.17
CHD4-203ENST00000535717 U2AF1L5P0DN76 240 aaPredicted RBP16.14■□□□□ 0.17
CHD4-203ENST00000535717 U2AF1Q01081 240 aaKnown RBP eCLIP16.14■□□□□ 0.17
CHD4-203ENST00000535717 PELP1Q8IZL8 1130 aaKnown RBP16.14■□□□□ 0.17
CHD4-203ENST00000535717 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.14■□□□□ 0.17
CHD4-203ENST00000535717 PLEKHG2Q9H7P9 1386 aa16.13■□□□□ 0.17
CHD4-203ENST00000535717 FAM196AQ6ZSG2 479 aa16.13■□□□□ 0.17
CHD4-203ENST00000535717 SPG7Q9UQ90 795 aa16.13■□□□□ 0.17
CHD4-203ENST00000535717 CYP27B1O15528 508 aa16.12■□□□□ 0.17
CHD4-203ENST00000535717 CCDC184Q52MB2 194 aa16.12■□□□□ 0.17
CHD4-203ENST00000535717 PLEKHO1Q53GL0 409 aaPredicted RBP16.12■□□□□ 0.17
CHD4-203ENST00000535717 RSPH6AQ9H0K4 717 aa16.12■□□□□ 0.17
CHD4-203ENST00000535717 PCDH11XQ9BZA7 1347 aa16.12■□□□□ 0.17
CHD4-203ENST00000535717 PCDH11YQ9BZA8 1340 aa16.12■□□□□ 0.17
CHD4-203ENST00000535717 SOCS7O14512 581 aa16.11■□□□□ 0.17
CHD4-203ENST00000535717 UPF1Q92900 1129 aaKnown RBP eCLIP16.11■□□□□ 0.176e-12■■■■■ 41.7
CHD4-203ENST00000535717 BCL9O00512 1426 aa16.11■□□□□ 0.17
CHD4-203ENST00000535717 FCHSD2O94868 740 aa16.1■□□□□ 0.17
CHD4-203ENST00000535717 PRKAR2BP31323 418 aa16.1■□□□□ 0.17
CHD4-203ENST00000535717 AMOTQ4VCS5 1084 aa16.1■□□□□ 0.17
CHD4-203ENST00000535717 DIEXFQ68CQ4 756 aaKnown RBP16.09■□□□□ 0.17
CHD4-203ENST00000535717 TRIM37O94972 964 aa16.08■□□□□ 0.16
CHD4-203ENST00000535717 PHKG2P15735 406 aa16.08■□□□□ 0.16
CHD4-203ENST00000535717 ZNF530Q6P9A1 599 aaPredicted RBP16.08■□□□□ 0.16
CHD4-203ENST00000535717 PHACTR3Q96KR7 559 aa16.08■□□□□ 0.16
CHD4-203ENST00000535717 SBF2Q86WG5 1849 aa16.08■□□□□ 0.16
CHD4-203ENST00000535717 NKX1-1Q15270 411 aaPredicted RBP16.07■□□□□ 0.16
CHD4-203ENST00000535717 MTHFSDQ2M296 383 aaKnown RBP16.07■□□□□ 0.16
CHD4-203ENST00000535717 PTF1AQ7RTS3 328 aa16.07■□□□□ 0.16
CHD4-203ENST00000535717 IFNL2Q8IZJ0 200 aa16.07■□□□□ 0.16
CHD4-203ENST00000535717 ACSBG1Q96GR2 724 aa16.07■□□□□ 0.16
CHD4-203ENST00000535717 KCNQ2O43526 872 aa16.06■□□□□ 0.16
CHD4-203ENST00000535717 WDR43Q15061 677 aaKnown RBP eCLIP16.06■□□□□ 0.16
CHD4-203ENST00000535717 MRS2Q9HD23 443 aa16.06■□□□□ 0.16
CHD4-203ENST00000535717 CCDC125Q86Z20 511 aa16.05■□□□□ 0.16
CHD4-203ENST00000535717 PLEKHF1Q96S99 279 aa16.05■□□□□ 0.16
CHD4-203ENST00000535717 ADAMTS8Q9UP79 889 aa16.05■□□□□ 0.16
CHD4-203ENST00000535717 C1orf141Q5JVX7 400 aa16.04■□□□□ 0.16
CHD4-203ENST00000535717 BCL11BQ9C0K0 894 aaPredicted RBP16.04■□□□□ 0.16
CHD4-203ENST00000535717 DOT1LQ8TEK3 1739 aa16.03■□□□□ 0.16
CHD4-203ENST00000535717 TNS1Q9HBL0 1735 aaKnown RBP16.03■□□□□ 0.16
CHD4-203ENST00000535717 NHSQ6T4R5 1651 aa16.03■□□□□ 0.16
CHD4-203ENST00000535717 PRIM1P49642 420 aaKnown RBP16.03■□□□□ 0.16
CHD4-203ENST00000535717 AKAP4Q5JQC9 854 aa16.03■□□□□ 0.16
CHD4-203ENST00000535717 PNISRQ8TF01 805 aaKnown RBP16.03■□□□□ 0.16
CHD4-203ENST00000535717 KAT6BQ8WYB5 2073 aa16.03■□□□□ 0.16
CHD4-203ENST00000535717 TOGARAM1Q9Y4F4 1720 aa16.02■□□□□ 0.16
CHD4-203ENST00000535717 HSP90AB1P08238 724 aaKnown RBP16.02■□□□□ 0.16
CHD4-203ENST00000535717 GAS2L2Q8NHY3 880 aa16.02■□□□□ 0.16
CHD4-203ENST00000535717 PNNQ9H307 717 aaKnown RBP16.02■□□□□ 0.16
CHD4-203ENST00000535717 KDM6AO15550 1401 aaPredicted RBP16.02■□□□□ 0.15
CHD4-203ENST00000535717 APBA3O96018 575 aa16.01■□□□□ 0.15
CHD4-203ENST00000535717 SF3B2Q13435 895 aaKnown RBP16.01■□□□□ 0.15
CHD4-203ENST00000535717 MPRIPQ6WCQ1 1025 aa16.01■□□□□ 0.15
CHD4-203ENST00000535717 SYTL4Q96C24 671 aaPredicted RBP16.01■□□□□ 0.15
CHD4-203ENST00000535717 DCAF5Q96JK2 942 aa16.01■□□□□ 0.15
CHD4-203ENST00000535717 CCDC146Q8IYE0 955 aa16■□□□□ 0.15
CHD4-203ENST00000535717 MAP3K5Q99683 1374 aa16■□□□□ 0.15
CHD4-203ENST00000535717 GNAT3A8MTJ3 354 aa15.99■□□□□ 0.15
CHD4-203ENST00000535717 NEFMP07197 916 aa15.99■□□□□ 0.15
CHD4-203ENST00000535717 DEFB132Q7Z7B7 95 aa15.99■□□□□ 0.15
CHD4-203ENST00000535717 LGR6Q9HBX8 967 aa15.99■□□□□ 0.15
CHD4-203ENST00000535717 BTAF1O14981 1849 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 ITGB4P16144 1822 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 MAPK8IP3Q9UPT6 1336 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 ERVV-2B6SEH9 535 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 MIER1Q8N108 512 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 RUNDC1Q96C34 613 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 SCN11AQ9UI33 1791 aa15.98■□□□□ 0.15
CHD4-203ENST00000535717 CCER2I3L3R5 266 aa15.97■□□□□ 0.15
CHD4-203ENST00000535717 RNMTO43148 476 aaKnown RBP15.97■□□□□ 0.15
CHD4-203ENST00000535717 BAG6P46379 1132 aa15.97■□□□□ 0.15
CHD4-203ENST00000535717 EN1Q05925 392 aaPredicted RBP15.97■□□□□ 0.15
CHD4-203ENST00000535717 NFE2L2Q16236 605 aa15.97■□□□□ 0.15
CHD4-203ENST00000535717 PIGBQ92521 554 aa15.97■□□□□ 0.15
CHD4-203ENST00000535717 ADAMTS7Q9UKP4 1686 aa15.97■□□□□ 0.15
CHD4-203ENST00000535717 IL17REQ8NFR9 667 aa15.96■□□□□ 0.15
CHD4-203ENST00000535717 TMOD3Q9NYL9 352 aa15.96■□□□□ 0.15
CHD4-203ENST00000535717 PLSCR1O15162 318 aa15.95■□□□□ 0.14
CHD4-203ENST00000535717 CABP4P57796 275 aa15.95■□□□□ 0.14
CHD4-203ENST00000535717 CAMKK2Q96RR4 588 aa15.95■□□□□ 0.14
CHD4-203ENST00000535717 VIRMAQ69YN4 1812 aaKnown RBP15.94■□□□□ 0.14
CHD4-203ENST00000535717 TMPOP42166 694 aaKnown RBP15.94■□□□□ 0.14
CHD4-203ENST00000535717 EZH2Q15910 746 aaKnown RBP15.94■□□□□ 0.14
CHD4-203ENST00000535717 NFATC2IPQ8NCF5 419 aa15.94■□□□□ 0.14
CHD4-203ENST00000535717 DLG5Q8TDM6 1919 aa15.94■□□□□ 0.14
CHD4-203ENST00000535717 MRC1P22897 1456 aa15.93■□□□□ 0.14
CHD4-203ENST00000535717 CEMIPQ8WUJ3 1361 aa15.93■□□□□ 0.14
CHD4-203ENST00000535717 HTATSF1O43719 755 aaKnown RBP15.93■□□□□ 0.14
CHD4-203ENST00000535717 MCM10Q7L590 875 aa15.93■□□□□ 0.14
CHD4-203ENST00000535717 FAM9BQ8IZU0 186 aa15.93■□□□□ 0.14
CHD4-203ENST00000535717 SLC52A2Q9HAB3 445 aa15.93■□□□□ 0.14
CHD4-203ENST00000535717 RRP7AQ9Y3A4 280 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms