RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 PRIM1P49642 420 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-205ENST00000535452 PCDH11XQ9BZA7 1347 aa18.27■□□□□ 0.52
CLSTN3-205ENST00000535452 PCDH11YQ9BZA8 1340 aa18.27■□□□□ 0.52
CLSTN3-205ENST00000535452 SLC16A10Q8TF71 515 aa18.27■□□□□ 0.52
CLSTN3-205ENST00000535452 MSH5O43196 834 aa18.26■□□□□ 0.51
CLSTN3-205ENST00000535452 KLHL34Q8N239 644 aa18.26■□□□□ 0.51
CLSTN3-205ENST00000535452 ARXQ96QS3 562 aa18.26■□□□□ 0.51
CLSTN3-205ENST00000535452 CCNL1Q9UK58 526 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-205ENST00000535452 INSRP06213 1382 aa18.26■□□□□ 0.51
CLSTN3-205ENST00000535452 NSD3Q9BZ95 1437 aa18.25■□□□□ 0.51
CLSTN3-205ENST00000535452 FBLN1P23142 703 aa18.25■□□□□ 0.51
CLSTN3-205ENST00000535452 BTAF1O14981 1849 aa18.24■□□□□ 0.51
CLSTN3-205ENST00000535452 NBPF6Q5VWK0 638 aa18.24■□□□□ 0.51
CLSTN3-205ENST00000535452 USHBP1Q8N6Y0 703 aa18.24■□□□□ 0.51
CLSTN3-205ENST00000535452 CCER1Q8TC90 406 aaPredicted RBP18.24■□□□□ 0.51
CLSTN3-205ENST00000535452 NBPF4Q96M43 638 aa18.24■□□□□ 0.51
CLSTN3-205ENST00000535452 CASZ1Q86V15 1759 aa18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 HSP90AB2PQ58FF8 381 aa18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 FHDC1Q9C0D6 1143 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 PDGFDQ9GZP0 370 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 SPG7Q9UQ90 795 aa18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 KIF20BQ96Q89 1820 aa18.23■□□□□ 0.51
CLSTN3-205ENST00000535452 EIF4G2P78344 907 aaKnown RBP eCLIP18.22■□□□□ 0.51
CLSTN3-205ENST00000535452 PTGER2P43116 358 aa18.21■□□□□ 0.51
CLSTN3-205ENST00000535452 SYT17Q9BSW7 474 aa18.21■□□□□ 0.51
CLSTN3-205ENST00000535452 MEGF6O75095 1541 aa18.2■□□□□ 0.5
CLSTN3-205ENST00000535452 SMARCC1Q92922 1105 aaPredicted RBP18.2■□□□□ 0.5
CLSTN3-205ENST00000535452 ZNF827Q17R98 1081 aa18.19■□□□□ 0.5
CLSTN3-205ENST00000535452 MPRIPQ6WCQ1 1025 aa18.19■□□□□ 0.5
CLSTN3-205ENST00000535452 FLAD1Q8NFF5 587 aa18.19■□□□□ 0.5
CLSTN3-205ENST00000535452 LRRC4BQ9NT99 713 aa18.19■□□□□ 0.5
CLSTN3-205ENST00000535452 GPR162Q16538 588 aa18.18■□□□□ 0.5
CLSTN3-205ENST00000535452 PELP1Q8IZL8 1130 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-205ENST00000535452 AKT1S1Q96B36 256 aa18.17■□□□□ 0.5
CLSTN3-205ENST00000535452 EMILIN1Q9Y6C2 1016 aa18.17■□□□□ 0.5
CLSTN3-205ENST00000535452 MYOM1P52179 1685 aa18.17■□□□□ 0.5
CLSTN3-205ENST00000535452 DOT1LQ8TEK3 1739 aa18.17■□□□□ 0.5
CLSTN3-205ENST00000535452 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-205ENST00000535452 AK7Q96M32 723 aa18.15■□□□□ 0.5
CLSTN3-205ENST00000535452 CARD14Q9BXL6 1004 aa18.15■□□□□ 0.5
CLSTN3-205ENST00000535452 PAPPAQ13219 1627 aa18.14■□□□□ 0.49
CLSTN3-205ENST00000535452 WASHC2AQ641Q2 1341 aa18.14■□□□□ 0.49
CLSTN3-205ENST00000535452 KCNQ4P56696 695 aa18.13■□□□□ 0.49
CLSTN3-205ENST00000535452 TMOD3Q9NYL9 352 aa18.13■□□□□ 0.49
CLSTN3-205ENST00000535452 PNPLA7Q6ZV29 1317 aa18.13■□□□□ 0.49
CLSTN3-205ENST00000535452 PALLDQ8WX93 1383 aa18.13■□□□□ 0.49
CLSTN3-205ENST00000535452 RGPD2P0DJD1 1756 aa18.12■□□□□ 0.49
CLSTN3-205ENST00000535452 IFNL2Q8IZJ0 200 aa18.12■□□□□ 0.49
CLSTN3-205ENST00000535452 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLSTN3-205ENST00000535452 MAP3K5Q99683 1374 aa18.12■□□□□ 0.49
CLSTN3-205ENST00000535452 SGIP1Q9BQI5 828 aa18.11■□□□□ 0.49
CLSTN3-205ENST00000535452 NSD2O96028 1365 aa18.1■□□□□ 0.49
CLSTN3-205ENST00000535452 HSP90AB1P08238 724 aaKnown RBP18.1■□□□□ 0.49
CLSTN3-205ENST00000535452 KNSTRNQ9Y448 316 aa18.1■□□□□ 0.49
CLSTN3-205ENST00000535452 MORC1Q86VD1 984 aa18.09■□□□□ 0.49
CLSTN3-205ENST00000535452 CYP27B1O15528 508 aa18.08■□□□□ 0.48
CLSTN3-205ENST00000535452 HSPA5P11021 654 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-205ENST00000535452 PANK3Q9H999 370 aa18.08■□□□□ 0.48
CLSTN3-205ENST00000535452 QSER1Q2KHR3 1735 aa18.08■□□□□ 0.48
CLSTN3-205ENST00000535452 GRIN3BO60391 1043 aa18.07■□□□□ 0.48
CLSTN3-205ENST00000535452 PLEKHO1Q53GL0 409 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-205ENST00000535452 EYA1Q99502 592 aa18.07■□□□□ 0.48
CLSTN3-205ENST00000535452 POLKQ9UBT6 870 aa18.07■□□□□ 0.48
CLSTN3-205ENST00000535452 LY75O60449 1722 aa18.06■□□□□ 0.48
CLSTN3-205ENST00000535452 COL23A1Q86Y22 540 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-205ENST00000535452 SHANK3Q9BYB0 1731 aa18.06■□□□□ 0.48
CLSTN3-205ENST00000535452 NKX1-1Q15270 411 aaPredicted RBP18.05■□□□□ 0.48
CLSTN3-205ENST00000535452 AMOTQ4VCS5 1084 aa18.05■□□□□ 0.48
CLSTN3-205ENST00000535452 C1orf141Q5JVX7 400 aa18.05■□□□□ 0.48
CLSTN3-205ENST00000535452 PLEKHG2Q9H7P9 1386 aa18.04■□□□□ 0.48
CLSTN3-205ENST00000535452 PHF14O94880 888 aa18.04■□□□□ 0.48
CLSTN3-205ENST00000535452 EIF4A2Q14240 407 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-205ENST00000535452 MSL1Q68DK7 614 aa18.04■□□□□ 0.48
CLSTN3-205ENST00000535452 LOC102724428A0A0B4J2F2 783 aa18.03■□□□□ 0.48
CLSTN3-205ENST00000535452 PHKG2P15735 406 aa18.03■□□□□ 0.48
CLSTN3-205ENST00000535452 ATP6V1AP38606 617 aa18.03■□□□□ 0.48
CLSTN3-205ENST00000535452 SIK1P57059 783 aa18.03■□□□□ 0.48
CLSTN3-205ENST00000535452 PIGBQ92521 554 aa18.03■□□□□ 0.48
CLSTN3-205ENST00000535452 SSFA2P28290 1259 aa18.02■□□□□ 0.48
CLSTN3-205ENST00000535452 MAP2P11137 1827 aaKnown RBP18.02■□□□□ 0.47
CLSTN3-205ENST00000535452 C5P01031 1676 aa18.02■□□□□ 0.47
CLSTN3-205ENST00000535452 ZNF784Q8NCA9 323 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-205ENST00000535452 DCAF5Q96JK2 942 aa18.01■□□□□ 0.47
CLSTN3-205ENST00000535452 CD2APQ9Y5K6 639 aa18.01■□□□□ 0.47
CLSTN3-205ENST00000535452 PKD1L3Q7Z443 1732 aa18.01■□□□□ 0.47
CLSTN3-205ENST00000535452 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18■□□□□ 0.47
CLSTN3-205ENST00000535452 GNPATO15228 680 aa18■□□□□ 0.47
CLSTN3-205ENST00000535452 CABP4P57796 275 aa18■□□□□ 0.47
CLSTN3-205ENST00000535452 ANKRD26Q9UPS8 1709 aa17.99■□□□□ 0.47
CLSTN3-205ENST00000535452 ERVV-2B6SEH9 535 aa17.99■□□□□ 0.47
CLSTN3-205ENST00000535452 ZNF530Q6P9A1 599 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-205ENST00000535452 RBM42Q9BTD8 480 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-205ENST00000535452 NCAPD2Q15021 1401 aa17.98■□□□□ 0.47
CLSTN3-205ENST00000535452 MTHFSP49914 203 aa17.98■□□□□ 0.47
CLSTN3-205ENST00000535452 RTCBQ9Y3I0 505 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-205ENST00000535452 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
CLSTN3-205ENST00000535452 C4BP0C0L5 1744 aa17.96■□□□□ 0.47
CLSTN3-205ENST00000535452 TRAPPC3LQ5T215 181 aa17.96■□□□□ 0.47
CLSTN3-205ENST00000535452 NLGN2Q8NFZ4 835 aa17.96■□□□□ 0.47
CLSTN3-205ENST00000535452 ASAP1Q9ULH1 1129 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms