RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 NSD2O96028 1365 aa13.34□□□□□ -0.27
SSBP3-215ENST00000533946 PLSCR1O15162 318 aa13.34□□□□□ -0.27
SSBP3-215ENST00000533946 PRIM1P49642 420 aaKnown RBP13.34□□□□□ -0.27
SSBP3-215ENST00000533946 RTL1A6NKG5 1358 aa13.33□□□□□ -0.27
SSBP3-215ENST00000533946 FLT4P35916 1363 aa13.33□□□□□ -0.27
SSBP3-215ENST00000533946 CNGB1Q14028 1251 aaPredicted RBP13.33□□□□□ -0.28
SSBP3-215ENST00000533946 ZCRB1Q8TBF4 217 aaKnown RBP13.33□□□□□ -0.28
SSBP3-215ENST00000533946 EYA1Q99502 592 aa13.33□□□□□ -0.28
SSBP3-215ENST00000533946 CGNL1Q0VF96 1302 aa13.33□□□□□ -0.28
SSBP3-215ENST00000533946 TOGARAM1Q9Y4F4 1720 aa13.33□□□□□ -0.28
SSBP3-215ENST00000533946 LRP5O75197 1615 aa13.32□□□□□ -0.28
SSBP3-215ENST00000533946 CYP27B1O15528 508 aa13.32□□□□□ -0.28
SSBP3-215ENST00000533946 ZNF827Q17R98 1081 aa13.32□□□□□ -0.28
SSBP3-215ENST00000533946 RGPD3A6NKT7 1758 aaPredicted RBP13.32□□□□□ -0.28
SSBP3-215ENST00000533946 RGPD4Q7Z3J3 1758 aa13.32□□□□□ -0.28
SSBP3-215ENST00000533946 CASZ1Q86V15 1759 aa13.31□□□□□ -0.28
SSBP3-215ENST00000533946 EIF4A2Q14240 407 aaKnown RBP13.31□□□□□ -0.28
SSBP3-215ENST00000533946 WASHC2AQ641Q2 1341 aa13.31□□□□□ -0.28
SSBP3-215ENST00000533946 PARD3Q8TEW0 1356 aa13.31□□□□□ -0.28
SSBP3-215ENST00000533946 AMER1Q5JTC6 1135 aaPredicted RBP13.3□□□□□ -0.28
SSBP3-215ENST00000533946 SYTL4Q96C24 671 aaPredicted RBP13.3□□□□□ -0.28
SSBP3-215ENST00000533946 PAPPAQ13219 1627 aa13.3□□□□□ -0.28
SSBP3-215ENST00000533946 PER1O15534 1290 aaPredicted RBP13.29□□□□□ -0.28
SSBP3-215ENST00000533946 ZBTB7AO95365 584 aa13.29□□□□□ -0.28
SSBP3-215ENST00000533946 SMIM5Q71RC9 77 aa13.29□□□□□ -0.28
SSBP3-215ENST00000533946 AEBP1Q8IUX7 1158 aa13.29□□□□□ -0.28
SSBP3-215ENST00000533946 UTRNP46939 3433 aa13.29□□□□□ -0.28
SSBP3-215ENST00000533946 NCAPD2Q15021 1401 aa13.29□□□□□ -0.28
SSBP3-215ENST00000533946 TUBGCP6Q96RT7 1819 aa13.27□□□□□ -0.28
SSBP3-215ENST00000533946 GOLGB1Q14789 3259 aaKnown RBP13.27□□□□□ -0.28
SSBP3-215ENST00000533946 ATF5Q9Y2D1 282 aaPredicted RBP13.27□□□□□ -0.29
SSBP3-215ENST00000533946 PKD1L3Q7Z443 1732 aa13.27□□□□□ -0.29
SSBP3-215ENST00000533946 ITGB4P16144 1822 aa13.27□□□□□ -0.29
SSBP3-215ENST00000533946 TATP17735 454 aaPredicted RBP13.26□□□□□ -0.29
SSBP3-215ENST00000533946 SLC15A2Q16348 729 aa13.26□□□□□ -0.29
SSBP3-215ENST00000533946 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
SSBP3-215ENST00000533946 NBPF14Q5TI25 921 aa13.26□□□□□ -0.29
SSBP3-215ENST00000533946 MORC1Q86VD1 984 aa13.26□□□□□ -0.29
SSBP3-215ENST00000533946 AMIGO3Q86WK7 504 aa13.26□□□□□ -0.29
SSBP3-215ENST00000533946 RAPGEF4Q8WZA2 1011 aa13.26□□□□□ -0.29
SSBP3-215ENST00000533946 LY75O60449 1722 aa13.25□□□□□ -0.29
SSBP3-215ENST00000533946 SMG6Q86US8 1419 aaKnown RBP13.25□□□□□ -0.29
SSBP3-215ENST00000533946 KIF24Q5T7B8 1368 aa13.24□□□□□ -0.29
SSBP3-215ENST00000533946 PTGER2P43116 358 aa13.24□□□□□ -0.29
SSBP3-215ENST00000533946 MPRIPQ6WCQ1 1025 aa13.23□□□□□ -0.29
SSBP3-215ENST00000533946 AKT1S1Q96B36 256 aa13.23□□□□□ -0.29
SSBP3-215ENST00000533946 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
SSBP3-215ENST00000533946 PIGBQ92521 554 aa13.22□□□□□ -0.29
SSBP3-215ENST00000533946 IGSF1Q8N6C5 1336 aa13.21□□□□□ -0.29
SSBP3-215ENST00000533946 IL13P35225 146 aa13.21□□□□□ -0.29
SSBP3-215ENST00000533946 MTHFSP49914 203 aa13.21□□□□□ -0.29
SSBP3-215ENST00000533946 STK32BQ9NY57 414 aa13.21□□□□□ -0.29
SSBP3-215ENST00000533946 PCDH11XQ9BZA7 1347 aa13.2□□□□□ -0.3
SSBP3-215ENST00000533946 PCDH11YQ9BZA8 1340 aa13.2□□□□□ -0.3
SSBP3-215ENST00000533946 PHKG2P15735 406 aa13.2□□□□□ -0.3
SSBP3-215ENST00000533946 SGIP1Q9BQI5 828 aa13.2□□□□□ -0.3
SSBP3-215ENST00000533946 PNPLA7Q6ZV29 1317 aa13.19□□□□□ -0.3
SSBP3-215ENST00000533946 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
SSBP3-215ENST00000533946 SPON1Q9HCB6 807 aa13.19□□□□□ -0.3
SSBP3-215ENST00000533946 ASAP1Q9ULH1 1129 aa13.19□□□□□ -0.3
SSBP3-215ENST00000533946 TAF1LQ8IZX4 1826 aa13.18□□□□□ -0.3
SSBP3-215ENST00000533946 HMOX1P09601 288 aa13.18□□□□□ -0.3
SSBP3-215ENST00000533946 SULT6B1Q6IMI4 303 aa13.18□□□□□ -0.3
SSBP3-215ENST00000533946 SLC4A9Q96Q91 983 aa13.18□□□□□ -0.3
SSBP3-215ENST00000533946 CCNL1Q9UK58 526 aaPredicted RBP13.18□□□□□ -0.3
SSBP3-215ENST00000533946 KDM6AO15550 1401 aaPredicted RBP13.18□□□□□ -0.3
SSBP3-215ENST00000533946 PALLDQ8WX93 1383 aa13.17□□□□□ -0.3
SSBP3-215ENST00000533946 C5P01031 1676 aa13.16□□□□□ -0.3
SSBP3-215ENST00000533946 ITPK1Q13572 414 aa13.16□□□□□ -0.3
SSBP3-215ENST00000533946 COL23A1Q86Y22 540 aaPredicted RBP13.16□□□□□ -0.3
SSBP3-215ENST00000533946 ATG3Q9NT62 314 aa13.16□□□□□ -0.3
SSBP3-215ENST00000533946 COL3A1P02461 1466 aaPredicted RBP13.16□□□□□ -0.3
SSBP3-215ENST00000533946 MSL1Q68DK7 614 aa13.15□□□□□ -0.3
SSBP3-215ENST00000533946 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
SSBP3-215ENST00000533946 SPG7Q9UQ90 795 aa13.15□□□□□ -0.3
SSBP3-215ENST00000533946 SLC27A3Q5K4L6 730 aa13.14□□□□□ -0.31
SSBP3-215ENST00000533946 ZNF530Q6P9A1 599 aaPredicted RBP13.14□□□□□ -0.31
SSBP3-215ENST00000533946 IFNL2Q8IZJ0 200 aa13.14□□□□□ -0.31
SSBP3-215ENST00000533946 FHDC1Q9C0D6 1143 aaPredicted RBP13.14□□□□□ -0.31
SSBP3-215ENST00000533946 LGR6Q9HBX8 967 aa13.14□□□□□ -0.31
SSBP3-215ENST00000533946 TFCP2L1Q9NZI6 479 aa13.14□□□□□ -0.31
SSBP3-215ENST00000533946 QSER1Q2KHR3 1735 aa13.13□□□□□ -0.31
SSBP3-215ENST00000533946 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.13□□□□□ -0.316e-7■■□□□ 12.6
SSBP3-215ENST00000533946 PPP1R1BQ9UD71 204 aaPredicted RBP13.13□□□□□ -0.31
SSBP3-215ENST00000533946 KDRP35968 1356 aa13.12□□□□□ -0.31
SSBP3-215ENST00000533946 MTFR1LQ9H019 292 aa13.12□□□□□ -0.31
SSBP3-215ENST00000533946 C4BP0C0L5 1744 aa13.12□□□□□ -0.31
SSBP3-215ENST00000533946 COL24A1Q17RW2 1714 aa13.12□□□□□ -0.31
SSBP3-215ENST00000533946 VIRMAQ69YN4 1812 aaKnown RBP13.11□□□□□ -0.31
SSBP3-215ENST00000533946 UBR3Q6ZT12 1888 aa13.11□□□□□ -0.31
SSBP3-215ENST00000533946 TMOD3Q9NYL9 352 aa13.11□□□□□ -0.31
SSBP3-215ENST00000533946 LOC102724428A0A0B4J2F2 783 aa13.1□□□□□ -0.31
SSBP3-215ENST00000533946 PHF14O94880 888 aa13.1□□□□□ -0.31
SSBP3-215ENST00000533946 SIK1P57059 783 aa13.1□□□□□ -0.31
SSBP3-215ENST00000533946 MTHFSDQ2M296 383 aaKnown RBP13.1□□□□□ -0.31
SSBP3-215ENST00000533946 PLEKHO1Q53GL0 409 aaPredicted RBP13.1□□□□□ -0.31
SSBP3-215ENST00000533946 NFATC2IPQ8NCF5 419 aa13.1□□□□□ -0.31
SSBP3-215ENST00000533946 SYT17Q9BSW7 474 aa13.1□□□□□ -0.31
SSBP3-215ENST00000533946 MYH14Q7Z406 1995 aaKnown RBP13.1□□□□□ -0.31
SSBP3-215ENST00000533946 MSH5O43196 834 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms