RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 CCER1Q8TC90 406 aaPredicted RBP25.57■■□□□ 1.68
HIF3A-216ENST00000533789 DDX54Q8TDD1 881 aaKnown RBP25.57■■□□□ 1.68
HIF3A-216ENST00000533789 NBPF6Q5VWK0 638 aa25.56■■□□□ 1.68
HIF3A-216ENST00000533789 NBPF4Q96M43 638 aa25.56■■□□□ 1.68
HIF3A-216ENST00000533789 STK32BQ9NY57 414 aa25.56■■□□□ 1.68
HIF3A-216ENST00000533789 CGNL1Q0VF96 1302 aa25.55■■□□□ 1.68
HIF3A-216ENST00000533789 TOGARAM1Q9Y4F4 1720 aa25.54■■□□□ 1.68
HIF3A-216ENST00000533789 SLC15A2Q16348 729 aa25.54■■□□□ 1.68
HIF3A-216ENST00000533789 HSP90AB2PQ58FF8 381 aa25.54■■□□□ 1.68
HIF3A-216ENST00000533789 ZCRB1Q8TBF4 217 aaKnown RBP25.54■■□□□ 1.68
HIF3A-216ENST00000533789 TAF1LQ8IZX4 1826 aa25.53■■□□□ 1.68
HIF3A-216ENST00000533789 EIF4G2P78344 907 aaKnown RBP eCLIP25.53■■□□□ 1.68
HIF3A-216ENST00000533789 USHBP1Q8N6Y0 703 aa25.53■■□□□ 1.68
HIF3A-216ENST00000533789 COL24A1Q17RW2 1714 aa25.51■■□□□ 1.68
HIF3A-216ENST00000533789 PDGFDQ9GZP0 370 aaPredicted RBP25.51■■□□□ 1.67
HIF3A-216ENST00000533789 PPP1R1BQ9UD71 204 aaPredicted RBP25.51■■□□□ 1.67
HIF3A-216ENST00000533789 EMILIN1Q9Y6C2 1016 aa25.51■■□□□ 1.67
HIF3A-216ENST00000533789 NCAPD2Q15021 1401 aa25.51■■□□□ 1.67
HIF3A-216ENST00000533789 NSD2O96028 1365 aa25.5■■□□□ 1.67
HIF3A-216ENST00000533789 C5P01031 1676 aa25.5■■□□□ 1.67
HIF3A-216ENST00000533789 HSPA5P11021 654 aaKnown RBP25.5■■□□□ 1.67
HIF3A-216ENST00000533789 RAPGEF4Q8WZA2 1011 aa25.5■■□□□ 1.67
HIF3A-216ENST00000533789 POLR3GLQ9BT43 218 aa25.49■■□□□ 1.67
HIF3A-216ENST00000533789 TATP17735 454 aaPredicted RBP25.47■■□□□ 1.67
HIF3A-216ENST00000533789 SYTL4Q96C24 671 aaPredicted RBP25.47■■□□□ 1.67
HIF3A-216ENST00000533789 PCDH11XQ9BZA7 1347 aa25.46■■□□□ 1.67
HIF3A-216ENST00000533789 PCDH11YQ9BZA8 1340 aa25.46■■□□□ 1.67
HIF3A-216ENST00000533789 ZBTB7AO95365 584 aa25.46■■□□□ 1.67
HIF3A-216ENST00000533789 PRIM1P49642 420 aaKnown RBP25.46■■□□□ 1.67
HIF3A-216ENST00000533789 LRRC4BQ9NT99 713 aa25.46■■□□□ 1.67
HIF3A-216ENST00000533789 SLC27A3Q5K4L6 730 aa25.45■■□□□ 1.66
HIF3A-216ENST00000533789 WASHC2AQ641Q2 1341 aa25.43■■□□□ 1.66
HIF3A-216ENST00000533789 ZNF827Q17R98 1081 aa25.43■■□□□ 1.66
HIF3A-216ENST00000533789 PPM1GO15355 546 aaPredicted RBP25.42■■□□□ 1.66
HIF3A-216ENST00000533789 PTGER2P43116 358 aa25.42■■□□□ 1.66
HIF3A-216ENST00000533789 MTFR1LQ9H019 292 aa25.41■■□□□ 1.66
HIF3A-216ENST00000533789 ATF5Q9Y2D1 282 aaPredicted RBP25.4■■□□□ 1.66
HIF3A-216ENST00000533789 AKT1S1Q96B36 256 aa25.39■■□□□ 1.66
HIF3A-216ENST00000533789 POLKQ9UBT6 870 aa25.39■■□□□ 1.66
HIF3A-216ENST00000533789 CHD4Q14839 1912 aa25.38■■□□□ 1.65
HIF3A-216ENST00000533789 PANK3Q9H999 370 aa25.37■■□□□ 1.65
HIF3A-216ENST00000533789 CYP27B1O15528 508 aa25.36■■□□□ 1.65
HIF3A-216ENST00000533789 SGIP1Q9BQI5 828 aa25.36■■□□□ 1.65
HIF3A-216ENST00000533789 UBR3Q6ZT12 1888 aa25.35■■□□□ 1.65
HIF3A-216ENST00000533789 EYA1Q99502 592 aa25.35■■□□□ 1.65
HIF3A-216ENST00000533789 VIRMAQ69YN4 1812 aaKnown RBP25.35■■□□□ 1.65
HIF3A-216ENST00000533789 CCNL1Q9UK58 526 aaPredicted RBP25.34■■□□□ 1.65
HIF3A-216ENST00000533789 C4BP0C0L5 1744 aa25.34■■□□□ 1.65
HIF3A-216ENST00000533789 PLEKHG2Q9H7P9 1386 aa25.33■■□□□ 1.65
HIF3A-216ENST00000533789 TNNT2P45379 298 aaPredicted RBP25.33■■□□□ 1.65
HIF3A-216ENST00000533789 KCNQ4P56696 695 aa25.33■■□□□ 1.65
HIF3A-216ENST00000533789 PNPLA7Q6ZV29 1317 aa25.33■■□□□ 1.64
HIF3A-216ENST00000533789 SPG7Q9UQ90 795 aa25.31■■□□□ 1.64
HIF3A-216ENST00000533789 EIF4A2Q14240 407 aaKnown RBP25.3■■□□□ 1.64
HIF3A-216ENST00000533789 PALLDQ8WX93 1383 aa25.3■■□□□ 1.64
HIF3A-216ENST00000533789 DCAF8L1A6NGE4 600 aa25.29■■□□□ 1.64
HIF3A-216ENST00000533789 SLC16A10Q8TF71 515 aa25.29■■□□□ 1.64
HIF3A-216ENST00000533789 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.29■■□□□ 1.64
HIF3A-216ENST00000533789 TFCP2L1Q9NZI6 479 aa25.29■■□□□ 1.64
HIF3A-216ENST00000533789 NKX1-1Q15270 411 aaPredicted RBP25.28■■□□□ 1.64
HIF3A-216ENST00000533789 MPRIPQ6WCQ1 1025 aa25.28■■□□□ 1.64
HIF3A-216ENST00000533789 FHDC1Q9C0D6 1143 aaPredicted RBP25.28■■□□□ 1.64
HIF3A-216ENST00000533789 MAP3K5Q99683 1374 aa25.28■■□□□ 1.64
HIF3A-216ENST00000533789 IGSF1Q8N6C5 1336 aa25.27■■□□□ 1.64
HIF3A-216ENST00000533789 ARXQ96QS3 562 aa25.26■■□□□ 1.63
HIF3A-216ENST00000533789 ZNF831Q5JPB2 1677 aa25.26■■□□□ 1.63
HIF3A-216ENST00000533789 SYT17Q9BSW7 474 aa25.25■■□□□ 1.63
HIF3A-216ENST00000533789 SCN11AQ9UI33 1791 aa25.24■■□□□ 1.63
HIF3A-216ENST00000533789 KIF7Q2M1P5 1343 aa25.24■■□□□ 1.63
HIF3A-216ENST00000533789 MORC1Q86VD1 984 aa25.24■■□□□ 1.63
HIF3A-216ENST00000533789 KNSTRNQ9Y448 316 aa25.24■■□□□ 1.63
HIF3A-216ENST00000533789 SMARCC1Q92922 1105 aaPredicted RBP25.23■■□□□ 1.63
HIF3A-216ENST00000533789 COL5A3P25940 1745 aaPredicted RBP25.23■■□□□ 1.63
HIF3A-216ENST00000533789 HMGB2P26583 209 aaKnown RBP25.22■■□□□ 1.63
HIF3A-216ENST00000533789 IFNL2Q8IZJ0 200 aa25.22■■□□□ 1.63
HIF3A-216ENST00000533789 PHKG2P15735 406 aa25.21■■□□□ 1.63
HIF3A-216ENST00000533789 PIGBQ92521 554 aa25.21■■□□□ 1.63
HIF3A-216ENST00000533789 POLD1P28340 1107 aa25.2■■□□□ 1.62
HIF3A-216ENST00000533789 YY1P25490 414 aa25.19■■□□□ 1.62
HIF3A-216ENST00000533789 TMOD3Q9NYL9 352 aa25.18■■□□□ 1.62
HIF3A-216ENST00000533789 UTRNP46939 3433 aa25.17■■□□□ 1.62
HIF3A-216ENST00000533789 AMER1Q5JTC6 1135 aaPredicted RBP25.17■■□□□ 1.62
HIF3A-216ENST00000533789 COL23A1Q86Y22 540 aaPredicted RBP25.17■■□□□ 1.62
HIF3A-216ENST00000533789 MSH5O43196 834 aa25.14■■□□□ 1.62
HIF3A-216ENST00000533789 KDRP35968 1356 aa25.14■■□□□ 1.61
HIF3A-216ENST00000533789 FLAD1Q8NFF5 587 aa25.13■■□□□ 1.61
HIF3A-216ENST00000533789 KDM6AO15550 1401 aaPredicted RBP25.12■■□□□ 1.61
HIF3A-216ENST00000533789 CICQ96RK0 1608 aaPredicted RBP25.12■■□□□ 1.61
HIF3A-216ENST00000533789 LOC102724428A0A0B4J2F2 783 aa25.12■■□□□ 1.61
HIF3A-216ENST00000533789 SIK1P57059 783 aa25.12■■□□□ 1.61
HIF3A-216ENST00000533789 PLEKHO1Q53GL0 409 aaPredicted RBP25.12■■□□□ 1.61
HIF3A-216ENST00000533789 AK7Q96M32 723 aa25.12■■□□□ 1.61
HIF3A-216ENST00000533789 MYH14Q7Z406 1995 aaKnown RBP25.12■■□□□ 1.61
HIF3A-216ENST00000533789 HSP90AB1P08238 724 aaKnown RBP25.11■■□□□ 1.61
HIF3A-216ENST00000533789 AMOTQ4VCS5 1084 aa25.11■■□□□ 1.61
HIF3A-216ENST00000533789 AEBP1Q8IUX7 1158 aa25.11■■□□□ 1.61
HIF3A-216ENST00000533789 ASAP1Q9ULH1 1129 aa25.11■■□□□ 1.61
HIF3A-216ENST00000533789 C4AP0C0L4 1744 aa25.1■■□□□ 1.61
HIF3A-216ENST00000533789 KLHL34Q8N239 644 aa25.1■■□□□ 1.61
HIF3A-216ENST00000533789 DCAF5Q96JK2 942 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms