RNA–Protein interactions for RNA: ENST00000533533.5

COPB1-210, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-210ENST00000533533 SLC27A3Q5K4L6 730 aa12.21□□□□□ -0.45
COPB1-210ENST00000533533 DDX54Q8TDD1 881 aaKnown RBP12.21□□□□□ -0.45
COPB1-210ENST00000533533 LTV1Q96GA3 475 aaPredicted RBP12.21□□□□□ -0.45
COPB1-210ENST00000533533 TIMELESSQ9UNS1 1208 aa12.21□□□□□ -0.45
COPB1-210ENST00000533533 AKT1S1Q96B36 256 aa12.2□□□□□ -0.46
COPB1-210ENST00000533533 RGPD2P0DJD1 1756 aa12.2□□□□□ -0.46
COPB1-210ENST00000533533 TUBGCP6Q96RT7 1819 aa12.19□□□□□ -0.46
COPB1-210ENST00000533533 SLC16A10Q8TF71 515 aa12.19□□□□□ -0.46
COPB1-210ENST00000533533 COL24A1Q17RW2 1714 aa12.19□□□□□ -0.46
COPB1-210ENST00000533533 MAP3K19Q56UN5 1328 aa12.18□□□□□ -0.46
COPB1-210ENST00000533533 C1QBPQ07021 282 aaKnown RBP12.18□□□□□ -0.46
COPB1-210ENST00000533533 COG3Q96JB2 828 aa12.18□□□□□ -0.46
COPB1-210ENST00000533533 TESK2Q96S53 571 aa12.18□□□□□ -0.46
COPB1-210ENST00000533533 LY75O60449 1722 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 DOT1LQ8TEK3 1739 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 SHANK3Q9BYB0 1731 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 HOXC9P31274 260 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 AMPHP49418 695 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 PRIM1P49642 420 aaKnown RBP12.17□□□□□ -0.46
COPB1-210ENST00000533533 SYTL4Q96C24 671 aaPredicted RBP12.17□□□□□ -0.46
COPB1-210ENST00000533533 ANKRD36BQ8N2N9 1353 aa12.17□□□□□ -0.46
COPB1-210ENST00000533533 PNPLA7Q6ZV29 1317 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 ST20-MTHFSA0A0A6YYL1 179 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 FBLN1P23142 703 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 POLD1P28340 1107 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 KCNQ4P56696 695 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 ZCRB1Q8TBF4 217 aaKnown RBP12.16□□□□□ -0.46
COPB1-210ENST00000533533 TFCP2L1Q9NZI6 479 aa12.16□□□□□ -0.46
COPB1-210ENST00000533533 SLC24A1O60721 1099 aa12.15□□□□□ -0.46
COPB1-210ENST00000533533 GPR162Q16538 588 aa12.15□□□□□ -0.46
COPB1-210ENST00000533533 MEGF6O75095 1541 aa12.15□□□□□ -0.46
COPB1-210ENST00000533533 NSD2O96028 1365 aa12.15□□□□□ -0.46
COPB1-210ENST00000533533 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
COPB1-210ENST00000533533 CCNL1Q9UK58 526 aaPredicted RBP12.13□□□□□ -0.47
COPB1-210ENST00000533533 RTL1A6NKG5 1358 aa12.13□□□□□ -0.47
COPB1-210ENST00000533533 USP47Q96K76 1375 aa12.13□□□□□ -0.47
COPB1-210ENST00000533533 CGNL1Q0VF96 1302 aa12.12□□□□□ -0.47
COPB1-210ENST00000533533 C1QTNF8P60827 252 aa12.12□□□□□ -0.47
COPB1-210ENST00000533533 RRS1Q15050 365 aaKnown RBP12.12□□□□□ -0.47
COPB1-210ENST00000533533 NBPF6Q5VWK0 638 aa12.12□□□□□ -0.47
COPB1-210ENST00000533533 NBPF4Q96M43 638 aa12.12□□□□□ -0.47
COPB1-210ENST00000533533 CEP350Q5VT06 3117 aa12.12□□□□□ -0.47
COPB1-210ENST00000533533 FYB1O15117 783 aa12.11□□□□□ -0.47
COPB1-210ENST00000533533 PELP1Q8IZL8 1130 aaKnown RBP12.11□□□□□ -0.47
COPB1-210ENST00000533533 NLGN2Q8NFZ4 835 aa12.11□□□□□ -0.47
COPB1-210ENST00000533533 COL23A1Q86Y22 540 aaPredicted RBP12.1□□□□□ -0.47
COPB1-210ENST00000533533 USHBP1Q8N6Y0 703 aa12.1□□□□□ -0.47
COPB1-210ENST00000533533 RAPGEF4Q8WZA2 1011 aa12.1□□□□□ -0.47
COPB1-210ENST00000533533 GGNBP2Q9H3C7 697 aa12.1□□□□□ -0.47
COPB1-210ENST00000533533 SMG6Q86US8 1419 aaKnown RBP12.1□□□□□ -0.47
COPB1-210ENST00000533533 TAF1LQ8IZX4 1826 aa12.09□□□□□ -0.47
COPB1-210ENST00000533533 SENP3-EIF4A1A0A087X0R7 540 aa12.09□□□□□ -0.47
COPB1-210ENST00000533533 C5P01031 1676 aa12.09□□□□□ -0.47
COPB1-210ENST00000533533 KIF20BQ96Q89 1820 aa12.09□□□□□ -0.47
COPB1-210ENST00000533533 TATP17735 454 aaPredicted RBP12.08□□□□□ -0.48
COPB1-210ENST00000533533 TMF1P82094 1093 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 HSP90AB2PQ58FF8 381 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 POLR3GLQ9BT43 218 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 ITGB4P16144 1822 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 PCDH11XQ9BZA7 1347 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 PCDH11YQ9BZA8 1340 aa12.08□□□□□ -0.48
COPB1-210ENST00000533533 INSRP06213 1382 aa12.07□□□□□ -0.48
COPB1-210ENST00000533533 GRIN3BO60391 1043 aa12.07□□□□□ -0.48
COPB1-210ENST00000533533 HMGB2P26583 209 aaKnown RBP12.07□□□□□ -0.48
COPB1-210ENST00000533533 FLT4P35916 1363 aa12.06□□□□□ -0.48
COPB1-210ENST00000533533 KIF24Q5T7B8 1368 aa12.06□□□□□ -0.48
COPB1-210ENST00000533533 GIGYF1O75420 1035 aaPredicted RBP12.06□□□□□ -0.48
COPB1-210ENST00000533533 YBX3P16989 372 aaKnown RBP eCLIP12.06□□□□□ -0.48
COPB1-210ENST00000533533 EIF4G2P78344 907 aaKnown RBP eCLIP12.06□□□□□ -0.48
COPB1-210ENST00000533533 MSL1Q68DK7 614 aa12.06□□□□□ -0.48
COPB1-210ENST00000533533 PALLDQ8WX93 1383 aa12.05□□□□□ -0.48
COPB1-210ENST00000533533 CYP27B1O15528 508 aa12.05□□□□□ -0.48
COPB1-210ENST00000533533 HSPA5P11021 654 aaKnown RBP12.05□□□□□ -0.48
COPB1-210ENST00000533533 MPRIPQ6WCQ1 1025 aa12.05□□□□□ -0.48
COPB1-210ENST00000533533 FLAD1Q8NFF5 587 aa12.05□□□□□ -0.48
COPB1-210ENST00000533533 PKD1L3Q7Z443 1732 aa12.04□□□□□ -0.48
COPB1-210ENST00000533533 TOGARAM1Q9Y4F4 1720 aa12.04□□□□□ -0.48
COPB1-210ENST00000533533 CDCA8Q53HL2 280 aa12.04□□□□□ -0.48
COPB1-210ENST00000533533 CD2APQ9Y5K6 639 aa12.04□□□□□ -0.48
COPB1-210ENST00000533533 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
COPB1-210ENST00000533533 UBR3Q6ZT12 1888 aa12.04□□□□□ -0.48
COPB1-210ENST00000533533 C4BP0C0L5 1744 aa12.03□□□□□ -0.48
COPB1-210ENST00000533533 SMARCC1Q92922 1105 aaPredicted RBP12.03□□□□□ -0.48
COPB1-210ENST00000533533 KCNA4P22459 653 aa12.02□□□□□ -0.49
COPB1-210ENST00000533533 CARD14Q9BXL6 1004 aa12.02□□□□□ -0.49
COPB1-210ENST00000533533 EMILIN1Q9Y6C2 1016 aa12.02□□□□□ -0.49
COPB1-210ENST00000533533 NKX1-1Q15270 411 aaPredicted RBP12.01□□□□□ -0.49
COPB1-210ENST00000533533 AMIGO3Q86WK7 504 aa12.01□□□□□ -0.49
COPB1-210ENST00000533533 PIGBQ92521 554 aa12.01□□□□□ -0.49
COPB1-210ENST00000533533 AK7Q96M32 723 aa12.01□□□□□ -0.49
COPB1-210ENST00000533533 NCAPD2Q15021 1401 aa12.01□□□□□ -0.49
COPB1-210ENST00000533533 ANKRD26Q9UPS8 1709 aa12□□□□□ -0.49
COPB1-210ENST00000533533 NSD3Q9BZ95 1437 aa12□□□□□ -0.49
COPB1-210ENST00000533533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.99□□□□□ -0.49
COPB1-210ENST00000533533 PPM1GO15355 546 aaPredicted RBP11.99□□□□□ -0.49
COPB1-210ENST00000533533 SPG7Q9UQ90 795 aa11.99□□□□□ -0.49
COPB1-210ENST00000533533 ATP10DQ9P241 1426 aa11.99□□□□□ -0.49
COPB1-210ENST00000533533 WASHC2AQ641Q2 1341 aa11.98□□□□□ -0.49
COPB1-210ENST00000533533 LOC102724428A0A0B4J2F2 783 aa11.98□□□□□ -0.49
COPB1-210ENST00000533533 PHF14O94880 888 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms