RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 SPON1Q9HCB6 807 aa21.29■■□□□ 1
CPSF1-211ENST00000533492 EMILIN1Q9Y6C2 1016 aa21.29■■□□□ 1
CPSF1-211ENST00000533492 TATP17735 454 aaPredicted RBP21.28■■□□□ 1
CPSF1-211ENST00000533492 SYTL4Q96C24 671 aaPredicted RBP21.28■■□□□ 1
CPSF1-211ENST00000533492 MEGF6O75095 1541 aa21.26■□□□□ 0.99
CPSF1-211ENST00000533492 SLC15A2Q16348 729 aa21.26■□□□□ 0.99
CPSF1-211ENST00000533492 PANK3Q9H999 370 aa21.26■□□□□ 0.99
CPSF1-211ENST00000533492 PPP1R1BQ9UD71 204 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-211ENST00000533492 PRIM1P49642 420 aaKnown RBP21.25■□□□□ 0.99
CPSF1-211ENST00000533492 BTAF1O14981 1849 aa21.24■□□□□ 0.99
CPSF1-211ENST00000533492 TNNT2P45379 298 aaPredicted RBP21.23■□□□□ 0.99
CPSF1-211ENST00000533492 WASHC2AQ641Q2 1341 aa21.23■□□□□ 0.99
CPSF1-211ENST00000533492 POLKQ9UBT6 870 aa21.22■□□□□ 0.99
CPSF1-211ENST00000533492 MAP2P11137 1827 aaKnown RBP21.22■□□□□ 0.99
CPSF1-211ENST00000533492 PDGFDQ9GZP0 370 aaPredicted RBP21.21■□□□□ 0.99
CPSF1-211ENST00000533492 ZBTB7AO95365 584 aa21.2■□□□□ 0.98
CPSF1-211ENST00000533492 SLC27A3Q5K4L6 730 aa21.19■□□□□ 0.98
CPSF1-211ENST00000533492 PCDH11XQ9BZA7 1347 aa21.19■□□□□ 0.98
CPSF1-211ENST00000533492 PCDH11YQ9BZA8 1340 aa21.19■□□□□ 0.98
CPSF1-211ENST00000533492 LRRC4BQ9NT99 713 aa21.18■□□□□ 0.98
CPSF1-211ENST00000533492 ATF5Q9Y2D1 282 aaPredicted RBP21.17■□□□□ 0.98
CPSF1-211ENST00000533492 KNSTRNQ9Y448 316 aa21.17■□□□□ 0.98
CPSF1-211ENST00000533492 SHANK3Q9BYB0 1731 aa21.17■□□□□ 0.98
CPSF1-211ENST00000533492 DOT1LQ8TEK3 1739 aa21.16■□□□□ 0.98
CPSF1-211ENST00000533492 EYA1Q99502 592 aa21.16■□□□□ 0.98
CPSF1-211ENST00000533492 CASZ1Q86V15 1759 aa21.15■□□□□ 0.98
CPSF1-211ENST00000533492 NSD2O96028 1365 aa21.15■□□□□ 0.98
CPSF1-211ENST00000533492 MORC1Q86VD1 984 aa21.15■□□□□ 0.98
CPSF1-211ENST00000533492 SPG7Q9UQ90 795 aa21.15■□□□□ 0.98
CPSF1-211ENST00000533492 ANKRD26Q9UPS8 1709 aa21.15■□□□□ 0.98
CPSF1-211ENST00000533492 CYP27B1O15528 508 aa21.13■□□□□ 0.97
CPSF1-211ENST00000533492 KCNQ4P56696 695 aa21.13■□□□□ 0.97
CPSF1-211ENST00000533492 EIF4A2Q14240 407 aaKnown RBP21.13■□□□□ 0.97
CPSF1-211ENST00000533492 ZNF827Q17R98 1081 aa21.13■□□□□ 0.97
CPSF1-211ENST00000533492 MTFR1LQ9H019 292 aa21.13■□□□□ 0.97
CPSF1-211ENST00000533492 MPRIPQ6WCQ1 1025 aa21.12■□□□□ 0.97
CPSF1-211ENST00000533492 CCNL1Q9UK58 526 aaPredicted RBP21.12■□□□□ 0.97
CPSF1-211ENST00000533492 DCAF8L1A6NGE4 600 aa21.11■□□□□ 0.97
CPSF1-211ENST00000533492 TFCP2L1Q9NZI6 479 aa21.11■□□□□ 0.97
CPSF1-211ENST00000533492 PAPPAQ13219 1627 aa21.11■□□□□ 0.97
CPSF1-211ENST00000533492 KIF7Q2M1P5 1343 aa21.1■□□□□ 0.97
CPSF1-211ENST00000533492 AKT1S1Q96B36 256 aa21.1■□□□□ 0.97
CPSF1-211ENST00000533492 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.1■□□□□ 0.97
CPSF1-211ENST00000533492 NCAPD2Q15021 1401 aa21.1■□□□□ 0.97
CPSF1-211ENST00000533492 PTGER2P43116 358 aa21.09■□□□□ 0.97
CPSF1-211ENST00000533492 HMGB2P26583 209 aaKnown RBP21.07■□□□□ 0.96
CPSF1-211ENST00000533492 NKX1-1Q15270 411 aaPredicted RBP21.07■□□□□ 0.96
CPSF1-211ENST00000533492 IFNL2Q8IZJ0 200 aa21.07■□□□□ 0.96
CPSF1-211ENST00000533492 LY75O60449 1722 aa21.07■□□□□ 0.96
CPSF1-211ENST00000533492 SLC16A10Q8TF71 515 aa21.06■□□□□ 0.96
CPSF1-211ENST00000533492 PKD1L3Q7Z443 1732 aa21.06■□□□□ 0.96
CPSF1-211ENST00000533492 SMARCC1Q92922 1105 aaPredicted RBP21.05■□□□□ 0.96
CPSF1-211ENST00000533492 IGSF1Q8N6C5 1336 aa21.04■□□□□ 0.96
CPSF1-211ENST00000533492 AMER1Q5JTC6 1135 aaPredicted RBP21.04■□□□□ 0.96
CPSF1-211ENST00000533492 PALLDQ8WX93 1383 aa21.04■□□□□ 0.96
CPSF1-211ENST00000533492 PNPLA7Q6ZV29 1317 aa21.04■□□□□ 0.96
CPSF1-211ENST00000533492 PHKG2P15735 406 aa21.03■□□□□ 0.96
CPSF1-211ENST00000533492 PIGBQ92521 554 aa21.03■□□□□ 0.96
CPSF1-211ENST00000533492 ARXQ96QS3 562 aa21.03■□□□□ 0.96
CPSF1-211ENST00000533492 MSH5O43196 834 aa21.02■□□□□ 0.96
CPSF1-211ENST00000533492 PLEKHO1Q53GL0 409 aaPredicted RBP21.02■□□□□ 0.96
CPSF1-211ENST00000533492 SGIP1Q9BQI5 828 aa21.02■□□□□ 0.96
CPSF1-211ENST00000533492 TMOD3Q9NYL9 352 aa21.02■□□□□ 0.96
CPSF1-211ENST00000533492 POLD1P28340 1107 aa21.01■□□□□ 0.95
CPSF1-211ENST00000533492 FHDC1Q9C0D6 1143 aaPredicted RBP21.01■□□□□ 0.95
CPSF1-211ENST00000533492 ITGB4P16144 1822 aa21.01■□□□□ 0.95
CPSF1-211ENST00000533492 SYT17Q9BSW7 474 aa21■□□□□ 0.95
CPSF1-211ENST00000533492 PLEKHG2Q9H7P9 1386 aa20.99■□□□□ 0.95
CPSF1-211ENST00000533492 QSER1Q2KHR3 1735 aa20.99■□□□□ 0.95
CPSF1-211ENST00000533492 TOGARAM1Q9Y4F4 1720 aa20.99■□□□□ 0.95
CPSF1-211ENST00000533492 PER1O15534 1290 aaPredicted RBP20.98■□□□□ 0.95
CPSF1-211ENST00000533492 HSP90AB1P08238 724 aaKnown RBP20.98■□□□□ 0.95
CPSF1-211ENST00000533492 AMOTQ4VCS5 1084 aa20.98■□□□□ 0.95
CPSF1-211ENST00000533492 CC2D1BQ5T0F9 858 aaKnown RBP20.98■□□□□ 0.95
CPSF1-211ENST00000533492 SULT6B1Q6IMI4 303 aa20.97■□□□□ 0.95
CPSF1-211ENST00000533492 MTHFSP49914 203 aa20.96■□□□□ 0.95
CPSF1-211ENST00000533492 ZNF530Q6P9A1 599 aaPredicted RBP20.96■□□□□ 0.95
CPSF1-211ENST00000533492 COL23A1Q86Y22 540 aaPredicted RBP20.96■□□□□ 0.95
CPSF1-211ENST00000533492 AEBP1Q8IUX7 1158 aa20.96■□□□□ 0.95
CPSF1-211ENST00000533492 FLAD1Q8NFF5 587 aa20.96■□□□□ 0.95
CPSF1-211ENST00000533492 TUBGCP6Q96RT7 1819 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 LOC102724428A0A0B4J2F2 783 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 IL13P35225 146 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 SIK1P57059 783 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 CNGB1Q14028 1251 aaPredicted RBP20.95■□□□□ 0.94
CPSF1-211ENST00000533492 KLHL34Q8N239 644 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 DCAF5Q96JK2 942 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 AK7Q96M32 723 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 ASAP1Q9ULH1 1129 aa20.95■□□□□ 0.94
CPSF1-211ENST00000533492 ERVV-2B6SEH9 535 aa20.94■□□□□ 0.94
CPSF1-211ENST00000533492 C1orf141Q5JVX7 400 aa20.94■□□□□ 0.94
CPSF1-211ENST00000533492 C5P01031 1676 aa20.93■□□□□ 0.94
CPSF1-211ENST00000533492 YY1P25490 414 aa20.92■□□□□ 0.94
CPSF1-211ENST00000533492 ATP6V1AP38606 617 aa20.92■□□□□ 0.94
CPSF1-211ENST00000533492 ATG3Q9NT62 314 aa20.92■□□□□ 0.94
CPSF1-211ENST00000533492 TAF1LQ8IZX4 1826 aa20.92■□□□□ 0.94
CPSF1-211ENST00000533492 CABP4P57796 275 aa20.91■□□□□ 0.94
CPSF1-211ENST00000533492 KDRP35968 1356 aa20.89■□□□□ 0.93
CPSF1-211ENST00000533492 MAP3K5Q99683 1374 aa20.89■□□□□ 0.93
CPSF1-211ENST00000533492 DIAPH1O60610 1272 aaKnown RBP20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms