RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NSD3Q9BZ95 1437 aa20.39■□□□□ 0.85
VPS28-215ENST00000531924 FLT4P35916 1363 aa20.39■□□□□ 0.85
VPS28-215ENST00000531924 CARD14Q9BXL6 1004 aa20.39■□□□□ 0.85
VPS28-215ENST00000531924 KAT6BQ8WYB5 2073 aa20.39■□□□□ 0.85
VPS28-215ENST00000531924 INSRP06213 1382 aa20.38■□□□□ 0.85
VPS28-215ENST00000531924 CASZ1Q86V15 1759 aa20.38■□□□□ 0.85
VPS28-215ENST00000531924 MEGF6O75095 1541 aa20.37■□□□□ 0.85
VPS28-215ENST00000531924 KIF24Q5T7B8 1368 aa20.37■□□□□ 0.85
VPS28-215ENST00000531924 BTAF1O14981 1849 aa20.37■□□□□ 0.85
VPS28-215ENST00000531924 PTGER2P43116 358 aa20.37■□□□□ 0.85
VPS28-215ENST00000531924 CCER1Q8TC90 406 aaPredicted RBP20.37■□□□□ 0.85
VPS28-215ENST00000531924 LRRC4BQ9NT99 713 aa20.37■□□□□ 0.85
VPS28-215ENST00000531924 YY1P25490 414 aa20.36■□□□□ 0.85
VPS28-215ENST00000531924 ZNF827Q17R98 1081 aa20.36■□□□□ 0.85
VPS28-215ENST00000531924 TFCP2L1Q9NZI6 479 aa20.35■□□□□ 0.85
VPS28-215ENST00000531924 EMILIN1Q9Y6C2 1016 aa20.35■□□□□ 0.85
VPS28-215ENST00000531924 EIF4G2P78344 907 aaKnown RBP eCLIP20.34■□□□□ 0.85
VPS28-215ENST00000531924 PCDH11XQ9BZA7 1347 aa20.33■□□□□ 0.85
VPS28-215ENST00000531924 PCDH11YQ9BZA8 1340 aa20.33■□□□□ 0.85
VPS28-215ENST00000531924 KIF20BQ96Q89 1820 aa20.33■□□□□ 0.85
VPS28-215ENST00000531924 ARXQ96QS3 562 aa20.33■□□□□ 0.85
VPS28-215ENST00000531924 FHDC1Q9C0D6 1143 aaPredicted RBP20.33■□□□□ 0.85
VPS28-215ENST00000531924 CCNL1Q9UK58 526 aaPredicted RBP20.33■□□□□ 0.85
VPS28-215ENST00000531924 KCNQ4P56696 695 aa20.32■□□□□ 0.84
VPS28-215ENST00000531924 AKT1S1Q96B36 256 aa20.32■□□□□ 0.84
VPS28-215ENST00000531924 SLC16A10Q8TF71 515 aa20.31■□□□□ 0.84
VPS28-215ENST00000531924 RGPD2P0DJD1 1756 aa20.31■□□□□ 0.84
VPS28-215ENST00000531924 MSH5O43196 834 aa20.3■□□□□ 0.84
VPS28-215ENST00000531924 HMGB2P26583 209 aaKnown RBP20.3■□□□□ 0.84
VPS28-215ENST00000531924 POLD1P28340 1107 aa20.3■□□□□ 0.84
VPS28-215ENST00000531924 SYT17Q9BSW7 474 aa20.3■□□□□ 0.84
VPS28-215ENST00000531924 PAPPAQ13219 1627 aa20.29■□□□□ 0.84
VPS28-215ENST00000531924 MYOM1P52179 1685 aa20.29■□□□□ 0.84
VPS28-215ENST00000531924 DOT1LQ8TEK3 1739 aa20.28■□□□□ 0.84
VPS28-215ENST00000531924 HSPA5P11021 654 aaKnown RBP20.28■□□□□ 0.84
VPS28-215ENST00000531924 TNNT2P45379 298 aaPredicted RBP20.28■□□□□ 0.84
VPS28-215ENST00000531924 MPRIPQ6WCQ1 1025 aa20.28■□□□□ 0.84
VPS28-215ENST00000531924 KLHL34Q8N239 644 aa20.28■□□□□ 0.84
VPS28-215ENST00000531924 SPG7Q9UQ90 795 aa20.28■□□□□ 0.84
VPS28-215ENST00000531924 NSD2O96028 1365 aa20.28■□□□□ 0.84
VPS28-215ENST00000531924 WASHC2AQ641Q2 1341 aa20.27■□□□□ 0.84
VPS28-215ENST00000531924 SGIP1Q9BQI5 828 aa20.27■□□□□ 0.84
VPS28-215ENST00000531924 PNPLA7Q6ZV29 1317 aa20.26■□□□□ 0.83
VPS28-215ENST00000531924 CYP27B1O15528 508 aa20.24■□□□□ 0.83
VPS28-215ENST00000531924 PANK3Q9H999 370 aa20.24■□□□□ 0.83
VPS28-215ENST00000531924 POLKQ9UBT6 870 aa20.24■□□□□ 0.83
VPS28-215ENST00000531924 SMARCC1Q92922 1105 aaPredicted RBP20.23■□□□□ 0.83
VPS28-215ENST00000531924 EYA1Q99502 592 aa20.23■□□□□ 0.83
VPS28-215ENST00000531924 SHANK3Q9BYB0 1731 aa20.23■□□□□ 0.83
VPS28-215ENST00000531924 PALLDQ8WX93 1383 aa20.21■□□□□ 0.83
VPS28-215ENST00000531924 GPR162Q16538 588 aa20.2■□□□□ 0.82
VPS28-215ENST00000531924 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS28-215ENST00000531924 EIF4A2Q14240 407 aaKnown RBP20.19■□□□□ 0.82
VPS28-215ENST00000531924 MAP3K5Q99683 1374 aa20.19■□□□□ 0.82
VPS28-215ENST00000531924 NKX1-1Q15270 411 aaPredicted RBP20.18■□□□□ 0.82
VPS28-215ENST00000531924 MORC1Q86VD1 984 aa20.18■□□□□ 0.82
VPS28-215ENST00000531924 COL23A1Q86Y22 540 aaPredicted RBP20.18■□□□□ 0.82
VPS28-215ENST00000531924 IFNL2Q8IZJ0 200 aa20.18■□□□□ 0.82
VPS28-215ENST00000531924 PELP1Q8IZL8 1130 aaKnown RBP20.18■□□□□ 0.82
VPS28-215ENST00000531924 FLAD1Q8NFF5 587 aa20.18■□□□□ 0.82
VPS28-215ENST00000531924 TMOD3Q9NYL9 352 aa20.18■□□□□ 0.82
VPS28-215ENST00000531924 LY75O60449 1722 aa20.18■□□□□ 0.82
VPS28-215ENST00000531924 PIGBQ92521 554 aa20.17■□□□□ 0.82
VPS28-215ENST00000531924 AK7Q96M32 723 aa20.17■□□□□ 0.82
VPS28-215ENST00000531924 KNSTRNQ9Y448 316 aa20.16■□□□□ 0.82
VPS28-215ENST00000531924 NCAPD2Q15021 1401 aa20.16■□□□□ 0.82
VPS28-215ENST00000531924 MSL1Q68DK7 614 aa20.15■□□□□ 0.82
VPS28-215ENST00000531924 QSER1Q2KHR3 1735 aa20.15■□□□□ 0.82
VPS28-215ENST00000531924 PHKG2P15735 406 aa20.14■□□□□ 0.81
VPS28-215ENST00000531924 MAP2P11137 1827 aaKnown RBP20.13■□□□□ 0.81
VPS28-215ENST00000531924 ANKRD26Q9UPS8 1709 aa20.13■□□□□ 0.81
VPS28-215ENST00000531924 PLEKHO1Q53GL0 409 aaPredicted RBP20.12■□□□□ 0.81
VPS28-215ENST00000531924 PKD1L3Q7Z443 1732 aa20.12■□□□□ 0.81
VPS28-215ENST00000531924 LOC102724428A0A0B4J2F2 783 aa20.11■□□□□ 0.81
VPS28-215ENST00000531924 PHF14O94880 888 aa20.11■□□□□ 0.81
VPS28-215ENST00000531924 HSP90AB1P08238 724 aaKnown RBP20.11■□□□□ 0.81
VPS28-215ENST00000531924 SIK1P57059 783 aa20.11■□□□□ 0.81
VPS28-215ENST00000531924 IGSF1Q8N6C5 1336 aa20.1■□□□□ 0.81
VPS28-215ENST00000531924 ASAP1Q9ULH1 1129 aa20.1■□□□□ 0.81
VPS28-215ENST00000531924 ATP6V1AP38606 617 aa20.09■□□□□ 0.81
VPS28-215ENST00000531924 AMOTQ4VCS5 1084 aa20.09■□□□□ 0.81
VPS28-215ENST00000531924 NLGN2Q8NFZ4 835 aa20.09■□□□□ 0.81
VPS28-215ENST00000531924 C5P01031 1676 aa20.09■□□□□ 0.81
VPS28-215ENST00000531924 PLEKHG2Q9H7P9 1386 aa20.08■□□□□ 0.81
VPS28-215ENST00000531924 ZNF530Q6P9A1 599 aaPredicted RBP20.08■□□□□ 0.81
VPS28-215ENST00000531924 TUBGCP6Q96RT7 1819 aa20.08■□□□□ 0.8
VPS28-215ENST00000531924 TOGARAM1Q9Y4F4 1720 aa20.07■□□□□ 0.8
VPS28-215ENST00000531924 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.07■□□□□ 0.8
VPS28-215ENST00000531924 ERVV-2B6SEH9 535 aa20.07■□□□□ 0.8
VPS28-215ENST00000531924 ZNF784Q8NCA9 323 aaPredicted RBP20.07■□□□□ 0.8
VPS28-215ENST00000531924 DCAF5Q96JK2 942 aa20.07■□□□□ 0.8
VPS28-215ENST00000531924 SSFA2P28290 1259 aa20.06■□□□□ 0.8
VPS28-215ENST00000531924 C1orf141Q5JVX7 400 aa20.06■□□□□ 0.8
VPS28-215ENST00000531924 LINC00116Q8NCU8 138 aa20.06■□□□□ 0.8
VPS28-215ENST00000531924 ATG3Q9NT62 314 aa20.06■□□□□ 0.8
VPS28-215ENST00000531924 ITGB4P16144 1822 aa20.05■□□□□ 0.8
VPS28-215ENST00000531924 GNPATO15228 680 aa20.05■□□□□ 0.8
VPS28-215ENST00000531924 GRIN3BO60391 1043 aa20.05■□□□□ 0.8
VPS28-215ENST00000531924 CABP4P57796 275 aa20.05■□□□□ 0.8
VPS28-215ENST00000531924 C4BP0C0L5 1744 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms