RNA–Protein interactions for RNA: ENST00000531243.2

PABPC4-225, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 4

Gene PABPC4, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-225	ENST00000531243	OVOS2	A0A0G2JMS6	1433 aa		28.4	■■■□□ 2.14
PABPC4-225	ENST00000531243	MEGF6	O75095	1541 aa		28.39	■■■□□ 2.14
PABPC4-225	ENST00000531243	HMOX1	P09601	288 aa		28.39	■■■□□ 2.14
PABPC4-225	ENST00000531243	WDR43	Q15061	677 aa	Known RBP eCLIP	28.39	■■■□□ 2.14
PABPC4-225	ENST00000531243	TNS2	Q63HR2	1409 aa		28.39	■■■□□ 2.14
PABPC4-225	ENST00000531243	NEFM	P07197	916 aa		28.38	■■■□□ 2.13
PABPC4-225	ENST00000531243	ZCRB1	Q8TBF4	217 aa	Known RBP	28.38	■■■□□ 2.13
PABPC4-225	ENST00000531243	SPG7	Q9UQ90	795 aa		28.38	■■■□□ 2.13
PABPC4-225	ENST00000531243	PKD1L3	Q7Z443	1732 aa		28.38	■■■□□ 2.13
PABPC4-225	ENST00000531243	MRS2	Q9HD23	443 aa		28.37	■■■□□ 2.13
PABPC4-225	ENST00000531243	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.37	■■■□□ 2.13
PABPC4-225	ENST00000531243	FCHSD2	O94868	740 aa		28.36	■■■□□ 2.13
PABPC4-225	ENST00000531243	AMOT	Q4VCS5	1084 aa		28.36	■■■□□ 2.13
PABPC4-225	ENST00000531243	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.36	■■■□□ 2.13
PABPC4-225	ENST00000531243	AEBP1	Q8IUX7	1158 aa		28.36	■■■□□ 2.13
PABPC4-225	ENST00000531243	PCDH11X	Q9BZA7	1347 aa		28.34	■■■□□ 2.13
PABPC4-225	ENST00000531243	PCDH11Y	Q9BZA8	1340 aa		28.34	■■■□□ 2.13
PABPC4-225	ENST00000531243	SHANK3	Q9BYB0	1731 aa		28.32	■■■□□ 2.12
PABPC4-225	ENST00000531243	DDX54	Q8TDD1	881 aa	Known RBP	28.3	■■■□□ 2.12
PABPC4-225	ENST00000531243	RSPH6A	Q9H0K4	717 aa		28.3	■■■□□ 2.12
PABPC4-225	ENST00000531243	CCER2	I3L3R5	266 aa		28.29	■■■□□ 2.12
PABPC4-225	ENST00000531243	PRKAR2B	P31323	418 aa		28.29	■■■□□ 2.12
PABPC4-225	ENST00000531243	KAT6B	Q8WYB5	2073 aa		28.28	■■■□□ 2.12
PABPC4-225	ENST00000531243	FAM196A	Q6ZSG2	479 aa		28.27	■■■□□ 2.12
PABPC4-225	ENST00000531243	IFNL2	Q8IZJ0	200 aa		28.27	■■■□□ 2.12
PABPC4-225	ENST00000531243	C1orf141	Q5JVX7	400 aa		28.26	■■■□□ 2.11
PABPC4-225	ENST00000531243	MAPK8IP3	Q9UPT6	1336 aa		28.25	■■■□□ 2.11
PABPC4-225	ENST00000531243	CCDC184	Q52MB2	194 aa		28.25	■■■□□ 2.11
PABPC4-225	ENST00000531243	ILDR2	Q71H61	639 aa		28.25	■■■□□ 2.11
PABPC4-225	ENST00000531243	MARCH10	Q8NA82	808 aa	Predicted RBP	28.25	■■■□□ 2.11
PABPC4-225	ENST00000531243	GAS2L2	Q8NHY3	880 aa		28.25	■■■□□ 2.11
PABPC4-225	ENST00000531243	HSP90AB1	P08238	724 aa	Known RBP	28.24	■■■□□ 2.11
PABPC4-225	ENST00000531243	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.23	■■■□□ 2.11
PABPC4-225	ENST00000531243	ADAMTS8	Q9UP79	889 aa		28.22	■■■□□ 2.11
PABPC4-225	ENST00000531243	BCL9	O00512	1426 aa		28.21	■■■□□ 2.11
PABPC4-225	ENST00000531243	PNISR	Q8TF01	805 aa	Known RBP	28.21	■■■□□ 2.11
PABPC4-225	ENST00000531243	SBF2	Q86WG5	1849 aa		28.2	■■■□□ 2.11
PABPC4-225	ENST00000531243	CYP27B1	O15528	508 aa		28.2	■■■□□ 2.1
PABPC4-225	ENST00000531243	PHKG2	P15735	406 aa		28.2	■■■□□ 2.1
PABPC4-225	ENST00000531243	MIER1	Q8N108	512 aa		28.2	■■■□□ 2.1
PABPC4-225	ENST00000531243	MTHFSD	Q2M296	383 aa	Known RBP	28.19	■■■□□ 2.1
PABPC4-225	ENST00000531243	AKAP4	Q5JQC9	854 aa		28.19	■■■□□ 2.1
PABPC4-225	ENST00000531243	FAM182B	Q5T319	152 aa		28.19	■■■□□ 2.1
PABPC4-225	ENST00000531243	VIRMA	Q69YN4	1812 aa	Known RBP	28.18	■■■□□ 2.1
PABPC4-225	ENST00000531243	RUNDC1	Q96C34	613 aa		28.18	■■■□□ 2.1
PABPC4-225	ENST00000531243	PLEKHF1	Q96S99	279 aa		28.18	■■■□□ 2.1
PABPC4-225	ENST00000531243	NKX1-1	Q15270	411 aa	Predicted RBP	28.16	■■■□□ 2.1
PABPC4-225	ENST00000531243	PHACTR3	Q96KR7	559 aa		28.16	■■■□□ 2.1
PABPC4-225	ENST00000531243	DOT1L	Q8TEK3	1739 aa		28.15	■■■□□ 2.1
PABPC4-225	ENST00000531243	DCAF5	Q96JK2	942 aa		28.15	■■■□□ 2.1
PABPC4-225	ENST00000531243	FAM9B	Q8IZU0	186 aa		28.14	■■■□□ 2.1
PABPC4-225	ENST00000531243	DLG5	Q8TDM6	1919 aa		28.14	■■■□□ 2.09
PABPC4-225	ENST00000531243	GNAT3	A8MTJ3	354 aa		28.13	■■■□□ 2.09
PABPC4-225	ENST00000531243	SF3B2	Q13435	895 aa	Known RBP	28.13	■■■□□ 2.09
PABPC4-225	ENST00000531243	CCDC125	Q86Z20	511 aa		28.13	■■■□□ 2.09
PABPC4-225	ENST00000531243	SCN11A	Q9UI33	1791 aa		28.13	■■■□□ 2.09
PABPC4-225	ENST00000531243	NHS	Q6T4R5	1651 aa		28.13	■■■□□ 2.09
PABPC4-225	ENST00000531243	CCDC146	Q8IYE0	955 aa		28.12	■■■□□ 2.09
PABPC4-225	ENST00000531243	RTF1	Q92541	710 aa	Known RBP	28.12	■■■□□ 2.09
PABPC4-225	ENST00000531243	MAP3K5	Q99683	1374 aa		28.11	■■■□□ 2.09
PABPC4-225	ENST00000531243	ITGB4	P16144	1822 aa		28.11	■■■□□ 2.09
PABPC4-225	ENST00000531243	NFE2L2	Q16236	605 aa		28.1	■■■□□ 2.09
PABPC4-225	ENST00000531243	HTATSF1	O43719	755 aa	Known RBP	28.09	■■■□□ 2.09
PABPC4-225	ENST00000531243	ACSBG1	Q96GR2	724 aa		28.09	■■■□□ 2.09
PABPC4-225	ENST00000531243	ERVV-2	B6SEH9	535 aa		28.08	■■■□□ 2.09
PABPC4-225	ENST00000531243	TRIM37	O94972	964 aa		28.08	■■■□□ 2.09
PABPC4-225	ENST00000531243	SYTL4	Q96C24	671 aa	Predicted RBP	28.08	■■■□□ 2.09
PABPC4-225	ENST00000531243	BCL11B	Q9C0K0	894 aa	Predicted RBP	28.08	■■■□□ 2.09
PABPC4-225	ENST00000531243	LMOD3	Q0VAK6	560 aa		28.07	■■■□□ 2.08
PABPC4-225	ENST00000531243	MPRIP	Q6WCQ1	1025 aa		28.07	■■■□□ 2.08
PABPC4-225	ENST00000531243	TOGARAM1	Q9Y4F4	1720 aa		28.06	■■■□□ 2.08
PABPC4-225	ENST00000531243	PRIM1	P49642	420 aa	Known RBP	28.05	■■■□□ 2.08
PABPC4-225	ENST00000531243	ADAMTS7	Q9UKP4	1686 aa		28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	RNMT	O43148	476 aa	Known RBP	28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	TMPO	P42166	694 aa	Known RBP	28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	RIPK4	P57078	832 aa		28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	CABP4	P57796	275 aa		28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	TMOD3	Q9NYL9	352 aa		28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	BTAF1	O14981	1849 aa		28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	TNS1	Q9HBL0	1735 aa	Known RBP	28.04	■■■□□ 2.08
PABPC4-225	ENST00000531243	KDM6A	O15550	1401 aa	Predicted RBP	28.03	■■■□□ 2.08
PABPC4-225	ENST00000531243	UPF1	Q92900	1129 aa	Known RBP eCLIP	28.02	■■■□□ 2.08
PABPC4-225	ENST00000531243	TEF	Q10587	303 aa		28.01	■■■□□ 2.07
PABPC4-225	ENST00000531243	APAF1	O14727	1248 aa		28	■■■□□ 2.07
PABPC4-225	ENST00000531243	KCNQ2	O43526	872 aa		28	■■■□□ 2.07
PABPC4-225	ENST00000531243	NEUROD2	Q15784	382 aa		28	■■■□□ 2.07
PABPC4-225	ENST00000531243	APBA3	O96018	575 aa		27.99	■■■□□ 2.07
PABPC4-225	ENST00000531243	BAG6	P46379	1132 aa		27.99	■■■□□ 2.07
PABPC4-225	ENST00000531243	LGR6	Q9HBX8	967 aa		27.99	■■■□□ 2.07
PABPC4-225	ENST00000531243	SLC52A2	Q9HAB3	445 aa		27.98	■■■□□ 2.07
PABPC4-225	ENST00000531243	IL17RE	Q8NFR9	667 aa		27.97	■■■□□ 2.07
PABPC4-225	ENST00000531243	RRP7A	Q9Y3A4	280 aa	Known RBP	27.97	■■■□□ 2.07
PABPC4-225	ENST00000531243	RGPD3	A6NKT7	1758 aa	Predicted RBP	27.96	■■■□□ 2.07
PABPC4-225	ENST00000531243	RGPD4	Q7Z3J3	1758 aa		27.96	■■■□□ 2.07
PABPC4-225	ENST00000531243	MRC1	P22897	1456 aa		27.96	■■■□□ 2.07
PABPC4-225	ENST00000531243	NGEF	Q8N5V2	710 aa		27.96	■■■□□ 2.07
PABPC4-225	ENST00000531243	CEMIP	Q8WUJ3	1361 aa		27.96	■■■□□ 2.07
PABPC4-225	ENST00000531243	NCBP3	Q53F19	620 aa	Known RBP	27.95	■■■□□ 2.06
PABPC4-225	ENST00000531243	MCM10	Q7L590	875 aa		27.95	■■■□□ 2.06
PABPC4-225	ENST00000531243	NFATC2IP	Q8NCF5	419 aa		27.95	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms