RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 IFNLR1Q8IU57 520 aaPredicted RBP12.16□□□□□ -0.46
CD44-232ENST00000531118 LY75O60449 1722 aa12.16□□□□□ -0.46
CD44-232ENST00000531118 DOT1LQ8TEK3 1739 aa12.15□□□□□ -0.46
CD44-232ENST00000531118 PRKAR2AP13861 404 aaKnown RBP12.15□□□□□ -0.46
CD44-232ENST00000531118 YBX3P16989 372 aaKnown RBP eCLIP12.15□□□□□ -0.46
CD44-232ENST00000531118 CCDC7Q96M83 1385 aa12.15□□□□□ -0.46
CD44-232ENST00000531118 PNPLA7Q6ZV29 1317 aa12.14□□□□□ -0.47
CD44-232ENST00000531118 AXIN2Q9Y2T1 843 aa12.14□□□□□ -0.47
CD44-232ENST00000531118 GRIN3BO60391 1043 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 SLC16A10Q8TF71 515 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 ACSBG1Q96GR2 724 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 CARD10Q9BWT7 1032 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 GPBP1L1Q9HC44 474 aaPredicted RBP12.13□□□□□ -0.47
CD44-232ENST00000531118 USP54Q70EL1 1684 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 LTN1O94822 1766 aa12.13□□□□□ -0.47
CD44-232ENST00000531118 WDR90Q96KV7 1748 aa12.12□□□□□ -0.47
CD44-232ENST00000531118 LRRC4BQ9NT99 713 aa12.12□□□□□ -0.47
CD44-232ENST00000531118 EXOC5O00471 708 aa12.11□□□□□ -0.47
CD44-232ENST00000531118 CSB-PGBD3P0DP91 1061 aa12.11□□□□□ -0.47
CD44-232ENST00000531118 NLRP6P59044 892 aa12.11□□□□□ -0.47
CD44-232ENST00000531118 CHADLQ6NUI6 762 aa12.11□□□□□ -0.47
CD44-232ENST00000531118 CICQ96RK0 1608 aaPredicted RBP12.11□□□□□ -0.47
CD44-232ENST00000531118 KDM2AQ9Y2K7 1162 aa12.1□□□□□ -0.47
CD44-232ENST00000531118 MON2Q7Z3U7 1717 aa12.09□□□□□ -0.47
CD44-232ENST00000531118 DCAF11Q8TEB1 546 aa12.09□□□□□ -0.47
CD44-232ENST00000531118 C5P01031 1676 aa12.09□□□□□ -0.47
CD44-232ENST00000531118 FAM208AQ9UK61 1670 aaKnown RBP12.09□□□□□ -0.47
CD44-232ENST00000531118 MNX1P50219 401 aaPredicted RBP12.08□□□□□ -0.48
CD44-232ENST00000531118 SRPK2P78362 688 aaKnown RBP12.08□□□□□ -0.48
CD44-232ENST00000531118 ARHGEF25Q86VW2 580 aa12.08□□□□□ -0.48
CD44-232ENST00000531118 ZNF526Q8TF50 670 aaPredicted RBP12.08□□□□□ -0.48
CD44-232ENST00000531118 SPOCK2Q92563 424 aa12.07□□□□□ -0.48
CD44-232ENST00000531118 SLC27A3Q5K4L6 730 aa12.06□□□□□ -0.48
CD44-232ENST00000531118 CABP2Q9NPB3 220 aa12.06□□□□□ -0.48
CD44-232ENST00000531118 FARP1Q9Y4F1 1045 aaPredicted RBP12.06□□□□□ -0.48
CD44-232ENST00000531118 TAF1LQ8IZX4 1826 aa12.06□□□□□ -0.48
CD44-232ENST00000531118 SOX12O15370 315 aa12.05□□□□□ -0.48
CD44-232ENST00000531118 KCNH5Q8NCM2 988 aa12.05□□□□□ -0.48
CD44-232ENST00000531118 STAC3Q96MF2 364 aa12.05□□□□□ -0.48
CD44-232ENST00000531118 TFCP2L1Q9NZI6 479 aa12.05□□□□□ -0.48
CD44-232ENST00000531118 ERBB3P21860 1342 aa12.05□□□□□ -0.48
CD44-232ENST00000531118 TOGARAM1Q9Y4F4 1720 aa12.04□□□□□ -0.48
CD44-232ENST00000531118 KIF3CO14782 793 aa12.04□□□□□ -0.48
CD44-232ENST00000531118 NSD2O96028 1365 aa12.04□□□□□ -0.48
CD44-232ENST00000531118 IL2RBP14784 551 aa12.03□□□□□ -0.48
CD44-232ENST00000531118 APLP1P51693 650 aa12.03□□□□□ -0.48
CD44-232ENST00000531118 CENPJQ9HC77 1338 aaPredicted RBP12.03□□□□□ -0.48
CD44-232ENST00000531118 CABP1Q9NZU7 370 aa12.02□□□□□ -0.49
CD44-232ENST00000531118 TTC21BQ7Z4L5 1316 aa12.02□□□□□ -0.49
CD44-232ENST00000531118 KIAA1551Q9HCM1 1747 aa12.01□□□□□ -0.49
CD44-232ENST00000531118 KCNQ4P56696 695 aa12.01□□□□□ -0.49
CD44-232ENST00000531118 MSL1Q68DK7 614 aa12.01□□□□□ -0.49
CD44-232ENST00000531118 TTC21AQ8NDW8 1320 aa12.01□□□□□ -0.49
CD44-232ENST00000531118 UBR3Q6ZT12 1888 aa12□□□□□ -0.49
CD44-232ENST00000531118 NLRP2Q9NX02 1062 aa12□□□□□ -0.49
CD44-232ENST00000531118 ANKRD36BQ8N2N9 1353 aa12□□□□□ -0.49
CD44-232ENST00000531118 RAB3GAP2Q9H2M9 1393 aa12□□□□□ -0.49
CD44-232ENST00000531118 COL13A1Q5TAT6 717 aaPredicted RBP11.99□□□□□ -0.49
CD44-232ENST00000531118 CD2APQ9Y5K6 639 aa11.99□□□□□ -0.49
CD44-232ENST00000531118 PKD1L3Q7Z443 1732 aa11.99□□□□□ -0.49
CD44-232ENST00000531118 RGPD2P0DJD1 1756 aa11.99□□□□□ -0.49
CD44-232ENST00000531118 KIF13BQ9NQT8 1826 aa11.98□□□□□ -0.49
CD44-232ENST00000531118 IGSF1Q8N6C5 1336 aa11.98□□□□□ -0.49
CD44-232ENST00000531118 AMER1Q5JTC6 1135 aaPredicted RBP11.98□□□□□ -0.49
CD44-232ENST00000531118 COL23A1Q86Y22 540 aaPredicted RBP11.98□□□□□ -0.49
CD44-232ENST00000531118 DNAJC5GQ8N7S2 189 aa11.98□□□□□ -0.49
CD44-232ENST00000531118 C4BP0C0L5 1744 aa11.97□□□□□ -0.49
CD44-232ENST00000531118 CCNL1Q9UK58 526 aaPredicted RBP11.97□□□□□ -0.49
CD44-232ENST00000531118 USP31Q70CQ4 1352 aa11.96□□□□□ -0.49
CD44-232ENST00000531118 PRELPP51888 382 aa11.96□□□□□ -0.49
CD44-232ENST00000531118 NUBP1P53384 320 aa11.96□□□□□ -0.49
CD44-232ENST00000531118 NBPF1Q3BBV0 1214 aa11.96□□□□□ -0.49
CD44-232ENST00000531118 BRCA1P38398 1863 aaKnown RBP11.95□□□□□ -0.5
CD44-232ENST00000531118 TNS4Q8IZW8 715 aa11.95□□□□□ -0.5
CD44-232ENST00000531118 ANKRD24Q8TF21 1146 aa11.95□□□□□ -0.5
CD44-232ENST00000531118 SYTL4Q96C24 671 aaPredicted RBP11.95□□□□□ -0.5
CD44-232ENST00000531118 WWC3Q9ULE0 1092 aa11.95□□□□□ -0.5
CD44-232ENST00000531118 MEGF6O75095 1541 aa11.95□□□□□ -0.5
CD44-232ENST00000531118 N4BP2Q86UW6 1770 aaPredicted RBP11.95□□□□□ -0.5
CD44-232ENST00000531118 KTN1Q86UP2 1357 aaKnown RBP11.94□□□□□ -0.5
CD44-232ENST00000531118 TOMM70O94826 608 aa11.94□□□□□ -0.5
CD44-232ENST00000531118 JMYQ8N9B5 988 aa11.94□□□□□ -0.5
CD44-232ENST00000531118 TNRC6CQ9HCJ0 1690 aaKnown RBP11.94□□□□□ -0.5
CD44-232ENST00000531118 EVC2Q86UK5 1308 aa11.93□□□□□ -0.5
CD44-232ENST00000531118 DDX54Q8TDD1 881 aaKnown RBP11.93□□□□□ -0.5
CD44-232ENST00000531118 KLRG1Q96E93 195 aa11.93□□□□□ -0.5
CD44-232ENST00000531118 USP47Q96K76 1375 aa11.92□□□□□ -0.5
CD44-232ENST00000531118 PXDNLA1KZ92 1463 aa11.92□□□□□ -0.5
CD44-232ENST00000531118 PRIM1P49642 420 aaKnown RBP11.92□□□□□ -0.5
CD44-232ENST00000531118 ITGB4P16144 1822 aa11.92□□□□□ -0.5
CD44-232ENST00000531118 ARFGEF1Q9Y6D6 1849 aa11.92□□□□□ -0.5
CD44-232ENST00000531118 CD163L1Q9NR16 1453 aa11.91□□□□□ -0.5
CD44-232ENST00000531118 HTRA3P83110 453 aa11.91□□□□□ -0.5
CD44-232ENST00000531118 FAM212AQ96EL1 285 aa11.91□□□□□ -0.5
CD44-232ENST00000531118 POTEHQ6S545 545 aa11.9□□□□□ -0.5
CD44-232ENST00000531118 NSD3Q9BZ95 1437 aa11.9□□□□□ -0.5
CD44-232ENST00000531118 NMRK2Q9NPI5 230 aa11.9□□□□□ -0.5
CD44-232ENST00000531118 MAP2P11137 1827 aaKnown RBP11.9□□□□□ -0.5
CD44-232ENST00000531118 SBNO2Q9Y2G9 1366 aa11.9□□□□□ -0.5
CD44-232ENST00000531118 GSE1Q14687 1217 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms