RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ZCRB1Q8TBF4 217 aaKnown RBP18.3■□□□□ 0.52
VPS28-211ENST00000530790 BTAF1O14981 1849 aa18.29■□□□□ 0.52
VPS28-211ENST00000530790 TXNRD1Q16881 649 aa18.29■□□□□ 0.52
VPS28-211ENST00000530790 DOT1LQ8TEK3 1739 aa18.29■□□□□ 0.52
VPS28-211ENST00000530790 TATP17735 454 aaPredicted RBP18.28■□□□□ 0.52
VPS28-211ENST00000530790 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
VPS28-211ENST00000530790 ANO8Q9HCE9 1232 aaPredicted RBP18.28■□□□□ 0.52
VPS28-211ENST00000530790 KIF7Q2M1P5 1343 aa18.27■□□□□ 0.52
VPS28-211ENST00000530790 WASHC2AQ641Q2 1341 aa18.27■□□□□ 0.52
VPS28-211ENST00000530790 PROM2Q8N271 834 aa18.27■□□□□ 0.52
VPS28-211ENST00000530790 NCAPD2Q15021 1401 aa18.26■□□□□ 0.51
VPS28-211ENST00000530790 POLKQ9UBT6 870 aa18.26■□□□□ 0.51
VPS28-211ENST00000530790 MAP2P11137 1827 aaKnown RBP18.26■□□□□ 0.51
VPS28-211ENST00000530790 PCDH11XQ9BZA7 1347 aa18.25■□□□□ 0.51
VPS28-211ENST00000530790 PCDH11YQ9BZA8 1340 aa18.25■□□□□ 0.51
VPS28-211ENST00000530790 SYTL4Q96C24 671 aaPredicted RBP18.25■□□□□ 0.51
VPS28-211ENST00000530790 KNSTRNQ9Y448 316 aa18.25■□□□□ 0.51
VPS28-211ENST00000530790 STK32BQ9NY57 414 aa18.24■□□□□ 0.51
VPS28-211ENST00000530790 PKD1L3Q7Z443 1732 aa18.23■□□□□ 0.51
VPS28-211ENST00000530790 PAPPAQ13219 1627 aa18.23■□□□□ 0.51
VPS28-211ENST00000530790 MORC1Q86VD1 984 aa18.22■□□□□ 0.51
VPS28-211ENST00000530790 CASZ1Q86V15 1759 aa18.22■□□□□ 0.51
VPS28-211ENST00000530790 PRIM1P49642 420 aaKnown RBP18.21■□□□□ 0.51
VPS28-211ENST00000530790 EIF4A2Q14240 407 aaKnown RBP18.2■□□□□ 0.5
VPS28-211ENST00000530790 EYA1Q99502 592 aa18.2■□□□□ 0.5
VPS28-211ENST00000530790 SPON1Q9HCB6 807 aa18.2■□□□□ 0.5
VPS28-211ENST00000530790 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
VPS28-211ENST00000530790 SLC27A3Q5K4L6 730 aa18.18■□□□□ 0.5
VPS28-211ENST00000530790 SPG7Q9UQ90 795 aa18.18■□□□□ 0.5
VPS28-211ENST00000530790 PLEKHG2Q9H7P9 1386 aa18.17■□□□□ 0.5
VPS28-211ENST00000530790 KAT6BQ8WYB5 2073 aa18.16■□□□□ 0.5
VPS28-211ENST00000530790 CYP27B1O15528 508 aa18.16■□□□□ 0.5
VPS28-211ENST00000530790 AMER1Q5JTC6 1135 aaPredicted RBP18.16■□□□□ 0.5
VPS28-211ENST00000530790 LRRC4BQ9NT99 713 aa18.16■□□□□ 0.5
VPS28-211ENST00000530790 PPP1R1BQ9UD71 204 aaPredicted RBP18.16■□□□□ 0.5
VPS28-211ENST00000530790 IGSF1Q8N6C5 1336 aa18.16■□□□□ 0.5
VPS28-211ENST00000530790 LY75O60449 1722 aa18.15■□□□□ 0.5
VPS28-211ENST00000530790 TOGARAM1Q9Y4F4 1720 aa18.15■□□□□ 0.5
VPS28-211ENST00000530790 ZNF827Q17R98 1081 aa18.14■□□□□ 0.49
VPS28-211ENST00000530790 PDGFDQ9GZP0 370 aaPredicted RBP18.14■□□□□ 0.49
VPS28-211ENST00000530790 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.14■□□□□ 0.49
VPS28-211ENST00000530790 ZBTB7AO95365 584 aa18.13■□□□□ 0.49
VPS28-211ENST00000530790 CCNL1Q9UK58 526 aaPredicted RBP18.12■□□□□ 0.49
VPS28-211ENST00000530790 NKX1-1Q15270 411 aaPredicted RBP18.11■□□□□ 0.49
VPS28-211ENST00000530790 MPRIPQ6WCQ1 1025 aa18.11■□□□□ 0.49
VPS28-211ENST00000530790 PALLDQ8WX93 1383 aa18.11■□□□□ 0.49
VPS28-211ENST00000530790 PER1O15534 1290 aaPredicted RBP18.1■□□□□ 0.49
VPS28-211ENST00000530790 KCNQ4P56696 695 aa18.1■□□□□ 0.49
VPS28-211ENST00000530790 IFNL2Q8IZJ0 200 aa18.1■□□□□ 0.49
VPS28-211ENST00000530790 MTFR1LQ9H019 292 aa18.1■□□□□ 0.49
VPS28-211ENST00000530790 QSER1Q2KHR3 1735 aa18.09■□□□□ 0.49
VPS28-211ENST00000530790 PHKG2P15735 406 aa18.09■□□□□ 0.49
VPS28-211ENST00000530790 CC2D1BQ5T0F9 858 aaKnown RBP18.09■□□□□ 0.49
VPS28-211ENST00000530790 AKT1S1Q96B36 256 aa18.09■□□□□ 0.49
VPS28-211ENST00000530790 NPC1L1Q9UHC9 1359 aa18.08■□□□□ 0.49
VPS28-211ENST00000530790 TFCP2L1Q9NZI6 479 aa18.08■□□□□ 0.48
VPS28-211ENST00000530790 ATF5Q9Y2D1 282 aaPredicted RBP18.08■□□□□ 0.48
VPS28-211ENST00000530790 ITGB4P16144 1822 aa18.07■□□□□ 0.48
VPS28-211ENST00000530790 C5P01031 1676 aa18.07■□□□□ 0.48
VPS28-211ENST00000530790 SMARCC1Q92922 1105 aaPredicted RBP18.07■□□□□ 0.48
VPS28-211ENST00000530790 TMOD3Q9NYL9 352 aa18.07■□□□□ 0.48
VPS28-211ENST00000530790 HMGB2P26583 209 aaKnown RBP18.06■□□□□ 0.48
VPS28-211ENST00000530790 MTHFSP49914 203 aa18.06■□□□□ 0.48
VPS28-211ENST00000530790 PLEKHO1Q53GL0 409 aaPredicted RBP18.06■□□□□ 0.48
VPS28-211ENST00000530790 AEBP1Q8IUX7 1158 aa18.06■□□□□ 0.48
VPS28-211ENST00000530790 KDRP35968 1356 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 TUBGCP6Q96RT7 1819 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 PNPLA7Q6ZV29 1317 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 IL13P35225 146 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 PTGER2P43116 358 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 AMOTQ4VCS5 1084 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 PIGBQ92521 554 aa18.05■□□□□ 0.48
VPS28-211ENST00000530790 HSP90AB1P08238 724 aaKnown RBP18.04■□□□□ 0.48
VPS28-211ENST00000530790 SULT6B1Q6IMI4 303 aa18.04■□□□□ 0.48
VPS28-211ENST00000530790 ZNF530Q6P9A1 599 aaPredicted RBP18.04■□□□□ 0.48
VPS28-211ENST00000530790 CNGB1Q14028 1251 aaPredicted RBP18.03■□□□□ 0.48
VPS28-211ENST00000530790 SLC16A10Q8TF71 515 aa18.03■□□□□ 0.48
VPS28-211ENST00000530790 C1orf141Q5JVX7 400 aa18.02■□□□□ 0.48
VPS28-211ENST00000530790 DCAF5Q96JK2 942 aa18.02■□□□□ 0.48
VPS28-211ENST00000530790 C4BP0C0L5 1744 aa18.01■□□□□ 0.47
VPS28-211ENST00000530790 KDM6AO15550 1401 aaPredicted RBP18.01■□□□□ 0.47
VPS28-211ENST00000530790 SGIP1Q9BQI5 828 aa18.01■□□□□ 0.47
VPS28-211ENST00000530790 TAF1LQ8IZX4 1826 aa18■□□□□ 0.47
VPS28-211ENST00000530790 ERVV-2B6SEH9 535 aa18■□□□□ 0.47
VPS28-211ENST00000530790 MSH5O43196 834 aa17.99■□□□□ 0.47
VPS28-211ENST00000530790 DIAPH1O60610 1272 aaKnown RBP17.99■□□□□ 0.47
VPS28-211ENST00000530790 ARXQ96QS3 562 aa17.99■□□□□ 0.47
VPS28-211ENST00000530790 ASAP1Q9ULH1 1129 aa17.99■□□□□ 0.47
VPS28-211ENST00000530790 COL3A1P02461 1466 aaPredicted RBP17.99■□□□□ 0.47
VPS28-211ENST00000530790 LOC102724428A0A0B4J2F2 783 aa17.98■□□□□ 0.47
VPS28-211ENST00000530790 DCAF8L1A6NGE4 600 aa17.98■□□□□ 0.47
VPS28-211ENST00000530790 POLD1P28340 1107 aa17.98■□□□□ 0.47
VPS28-211ENST00000530790 SIK1P57059 783 aa17.98■□□□□ 0.47
VPS28-211ENST00000530790 AK7Q96M32 723 aa17.98■□□□□ 0.47
VPS28-211ENST00000530790 FHDC1Q9C0D6 1143 aaPredicted RBP17.98■□□□□ 0.47
VPS28-211ENST00000530790 HMOX1P09601 288 aa17.97■□□□□ 0.47
VPS28-211ENST00000530790 COL24A1Q17RW2 1714 aa17.96■□□□□ 0.47
VPS28-211ENST00000530790 CABP4P57796 275 aa17.96■□□□□ 0.47
VPS28-211ENST00000530790 COL23A1Q86Y22 540 aaPredicted RBP17.96■□□□□ 0.47
VPS28-211ENST00000530790 FLAD1Q8NFF5 587 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms