RNA–Protein interactions for RNA: ENST00000530004.5

TTC39A-216, Transcript of tetratricopeptide repeat domain 39A, humanhuman

TSL 1 (best) BASIC

Gene TTC39A, Length 1,780 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39A-216ENST00000530004 SUPT16HQ9Y5B9 1047 aaKnown RBP18.92■□□□□ 0.62
TTC39A-216ENST00000530004 PRKAR2BP31323 418 aa18.91■□□□□ 0.62
TTC39A-216ENST00000530004 BARGINQ6ZT62 677 aa18.91■□□□□ 0.62
TTC39A-216ENST00000530004 RAPGEF4Q8WZA2 1011 aa18.91■□□□□ 0.62
TTC39A-216ENST00000530004 PNNQ9H307 717 aaKnown RBP18.91■□□□□ 0.62
TTC39A-216ENST00000530004 IL2RBP14784 551 aa18.9■□□□□ 0.62
TTC39A-216ENST00000530004 RRP7AQ9Y3A4 280 aaKnown RBP18.9■□□□□ 0.62
TTC39A-216ENST00000530004 MAPK8IP3Q9UPT6 1336 aa18.9■□□□□ 0.62
TTC39A-216ENST00000530004 NEUROD2Q15784 382 aa18.89■□□□□ 0.61
TTC39A-216ENST00000530004 DISP2A7MBM2 1401 aa18.89■□□□□ 0.61
TTC39A-216ENST00000530004 MEGF6O75095 1541 aa18.89■□□□□ 0.61
TTC39A-216ENST00000530004 TATP17735 454 aaPredicted RBP18.88■□□□□ 0.61
TTC39A-216ENST00000530004 GOLGA2Q08379 1002 aa18.88■□□□□ 0.61
TTC39A-216ENST00000530004 GLI3P10071 1580 aa18.88■□□□□ 0.61
TTC39A-216ENST00000530004 FAM98CQ17RN3 349 aaKnown RBP18.88■□□□□ 0.61
TTC39A-216ENST00000530004 CDCA7Q9BWT1 371 aaPredicted RBP18.88■□□□□ 0.61
TTC39A-216ENST00000530004 NEFLP07196 543 aa18.87■□□□□ 0.61
TTC39A-216ENST00000530004 PLEKHG2Q9H7P9 1386 aa18.86■□□□□ 0.61
TTC39A-216ENST00000530004 RBM6P78332 1123 aaKnown RBP18.86■□□□□ 0.61
TTC39A-216ENST00000530004 WWC1Q8IX03 1113 aa18.86■□□□□ 0.61
TTC39A-216ENST00000530004 PHACTR3Q96KR7 559 aa18.86■□□□□ 0.61
TTC39A-216ENST00000530004 OVOS2A0A0G2JMS6 1433 aa18.86■□□□□ 0.61
TTC39A-216ENST00000530004 NCBP3Q53F19 620 aaKnown RBP18.86■□□□□ 0.61
TTC39A-216ENST00000530004 POTEAQ6S8J7 498 aa18.86■□□□□ 0.61
TTC39A-216ENST00000530004 ONECUT3O60422 494 aaPredicted RBP18.85■□□□□ 0.61
TTC39A-216ENST00000530004 NEFMP07197 916 aa18.85■□□□□ 0.61
TTC39A-216ENST00000530004 CCDC27Q2M243 656 aa18.85■□□□□ 0.61
TTC39A-216ENST00000530004 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.84■□□□□ 0.61
TTC39A-216ENST00000530004 TMPOP42166 694 aaKnown RBP18.83■□□□□ 0.61
TTC39A-216ENST00000530004 SLFN5Q08AF3 891 aa18.83■□□□□ 0.61
TTC39A-216ENST00000530004 AMOTQ4VCS5 1084 aa18.83■□□□□ 0.61
TTC39A-216ENST00000530004 PLEKHO1Q53GL0 409 aaPredicted RBP18.83■□□□□ 0.61
TTC39A-216ENST00000530004 RXRBP28702 533 aa18.83■□□□□ 0.6
TTC39A-216ENST00000530004 FKBP8Q14318 412 aa18.83■□□□□ 0.6
TTC39A-216ENST00000530004 MTHFSDQ2M296 383 aaKnown RBP18.82■□□□□ 0.6
TTC39A-216ENST00000530004 DUSP27Q5VZP5 1158 aa18.82■□□□□ 0.6
TTC39A-216ENST00000530004 ZCRB1Q8TBF4 217 aaKnown RBP18.82■□□□□ 0.6
TTC39A-216ENST00000530004 SPG7Q9UQ90 795 aa18.82■□□□□ 0.6
TTC39A-216ENST00000530004 E9PSI1 815 aa18.81■□□□□ 0.6
TTC39A-216ENST00000530004 EXOC5O00471 708 aa18.81■□□□□ 0.6
TTC39A-216ENST00000530004 SPINK5Q9NQ38 1064 aaPredicted RBP18.81■□□□□ 0.6
TTC39A-216ENST00000530004 PARP4Q9UKK3 1724 aaKnown RBP18.81■□□□□ 0.6
TTC39A-216ENST00000530004 A0A0G2JS52 829 aa18.81■□□□□ 0.6
TTC39A-216ENST00000530004 MYT1Q01538 1121 aa18.81■□□□□ 0.6
TTC39A-216ENST00000530004 DDB1Q16531 1140 aa18.81■□□□□ 0.6
TTC39A-216ENST00000530004 WNK3Q9BYP7 1800 aa18.8■□□□□ 0.6
TTC39A-216ENST00000530004 WDR63Q8IWG1 891 aa18.8■□□□□ 0.6
TTC39A-216ENST00000530004 TRMT2AQ8IZ69 625 aaKnown RBP18.8■□□□□ 0.6
TTC39A-216ENST00000530004 GAS2L2Q8NHY3 880 aa18.8■□□□□ 0.6
TTC39A-216ENST00000530004 THSD7AQ9UPZ6 1657 aa18.8■□□□□ 0.6
TTC39A-216ENST00000530004 TNS2Q63HR2 1409 aa18.79■□□□□ 0.6
TTC39A-216ENST00000530004 RIPK4P57078 832 aa18.79■□□□□ 0.6
TTC39A-216ENST00000530004 SEPT12Q8IYM1 358 aa18.79■□□□□ 0.6
TTC39A-216ENST00000530004 RCAN3Q9UKA8 241 aa18.79■□□□□ 0.6
TTC39A-216ENST00000530004 ZNF530Q6P9A1 599 aaPredicted RBP18.78■□□□□ 0.6
TTC39A-216ENST00000530004 PCDH11XQ9BZA7 1347 aa18.78■□□□□ 0.6
TTC39A-216ENST00000530004 PCDH11YQ9BZA8 1340 aa18.78■□□□□ 0.6
TTC39A-216ENST00000530004 CYP27B1O15528 508 aa18.78■□□□□ 0.6
TTC39A-216ENST00000530004 NFE2L2Q16236 605 aa18.78■□□□□ 0.6
TTC39A-216ENST00000530004 TRIM35Q9UPQ4 493 aa18.78■□□□□ 0.6
TTC39A-216ENST00000530004 PKD1L3Q7Z443 1732 aa18.77■□□□□ 0.6
TTC39A-216ENST00000530004 LRRC37A3O60309 1634 aa18.77■□□□□ 0.59
TTC39A-216ENST00000530004 IFNL2Q8IZJ0 200 aa18.76■□□□□ 0.59
TTC39A-216ENST00000530004 DDX54Q8TDD1 881 aaKnown RBP18.76■□□□□ 0.59
TTC39A-216ENST00000530004 RNF123Q5XPI4 1314 aa18.76■□□□□ 0.59
TTC39A-216ENST00000530004 PHKG2P15735 406 aa18.76■□□□□ 0.59
TTC39A-216ENST00000530004 IRX6P78412 446 aaPredicted RBP18.76■□□□□ 0.59
TTC39A-216ENST00000530004 AKAP4Q5JQC9 854 aa18.76■□□□□ 0.59
TTC39A-216ENST00000530004 C1orf141Q5JVX7 400 aa18.76■□□□□ 0.59
TTC39A-216ENST00000530004 RGS12O14924 1447 aa18.73■□□□□ 0.59
TTC39A-216ENST00000530004 GNAT3A8MTJ3 354 aa18.73■□□□□ 0.59
TTC39A-216ENST00000530004 MARCH10Q8NA82 808 aaPredicted RBP18.73■□□□□ 0.59
TTC39A-216ENST00000530004 MAP3K5Q99683 1374 aa18.73■□□□□ 0.59
TTC39A-216ENST00000530004 SHANK3Q9BYB0 1731 aa18.73■□□□□ 0.59
TTC39A-216ENST00000530004 HTATSF1O43719 755 aaKnown RBP18.71■□□□□ 0.59
TTC39A-216ENST00000530004 NKX1-1Q15270 411 aaPredicted RBP18.71■□□□□ 0.59
TTC39A-216ENST00000530004 HSP90AB1P08238 724 aaKnown RBP18.7■□□□□ 0.58
TTC39A-216ENST00000530004 MPRIPQ6WCQ1 1025 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 MYH16Q9H6N6 1097 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 IL16Q14005 1332 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 RRP1P56182 461 aaKnown RBP18.7■□□□□ 0.58
TTC39A-216ENST00000530004 LMOD3Q0VAK6 560 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 KRT27Q7Z3Y8 459 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 RTF1Q92541 710 aaKnown RBP18.7■□□□□ 0.58
TTC39A-216ENST00000530004 DCAF5Q96JK2 942 aa18.7■□□□□ 0.58
TTC39A-216ENST00000530004 DCTN1Q14203 1278 aa18.68■□□□□ 0.58
TTC39A-216ENST00000530004 MCM10Q7L590 875 aa18.68■□□□□ 0.58
TTC39A-216ENST00000530004 IL17REQ8NFR9 667 aa18.68■□□□□ 0.58
TTC39A-216ENST00000530004 LGR6Q9HBX8 967 aa18.68■□□□□ 0.58
TTC39A-216ENST00000530004 KDM6AO15550 1401 aaPredicted RBP18.68■□□□□ 0.58
TTC39A-216ENST00000530004 RNMTO43148 476 aaKnown RBP18.68■□□□□ 0.58
TTC39A-216ENST00000530004 FAM182BQ5T319 152 aa18.67■□□□□ 0.58
TTC39A-216ENST00000530004 DLG5Q8TDM6 1919 aa18.66■□□□□ 0.58
TTC39A-216ENST00000530004 CEMIPQ8WUJ3 1361 aa18.66■□□□□ 0.58
TTC39A-216ENST00000530004 THUMPD2Q9BTF0 503 aaKnown RBP18.66■□□□□ 0.58
TTC39A-216ENST00000530004 FANCIQ9NVI1 1328 aa18.66■□□□□ 0.58
TTC39A-216ENST00000530004 CALD1Q05682 793 aaKnown RBP18.65■□□□□ 0.58
TTC39A-216ENST00000530004 TSR2Q969E8 191 aaKnown RBP18.65■□□□□ 0.58
TTC39A-216ENST00000530004 BCL9O00512 1426 aa18.65■□□□□ 0.58
TTC39A-216ENST00000530004 ERICH6BQ5W0A0 696 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms