RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 POLD1P28340 1107 aa16.92■□□□□ 0.3
USH1C-208ENST00000529563 ZNF827Q17R98 1081 aa16.92■□□□□ 0.3
USH1C-208ENST00000529563 RTL1A6NKG5 1358 aa16.91■□□□□ 0.3
USH1C-208ENST00000529563 MSH5O43196 834 aa16.91■□□□□ 0.3
USH1C-208ENST00000529563 LRRC4BQ9NT99 713 aa16.91■□□□□ 0.3
USH1C-208ENST00000529563 USHBP1Q8N6Y0 703 aa16.9■□□□□ 0.3
USH1C-208ENST00000529563 FYB1O15117 783 aa16.89■□□□□ 0.29
USH1C-208ENST00000529563 TATP17735 454 aaPredicted RBP16.89■□□□□ 0.29
USH1C-208ENST00000529563 KCNQ4P56696 695 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 NBPF6Q5VWK0 638 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 PELP1Q8IZL8 1130 aaKnown RBP16.88■□□□□ 0.29
USH1C-208ENST00000529563 SLC16A10Q8TF71 515 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 NBPF4Q96M43 638 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 CCNL1Q9UK58 526 aaPredicted RBP16.88■□□□□ 0.29
USH1C-208ENST00000529563 CGNL1Q0VF96 1302 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 PAPPAQ13219 1627 aa16.88■□□□□ 0.29
USH1C-208ENST00000529563 GPR162Q16538 588 aa16.87■□□□□ 0.29
USH1C-208ENST00000529563 AKT1S1Q96B36 256 aa16.87■□□□□ 0.29
USH1C-208ENST00000529563 DOT1LQ8TEK3 1739 aa16.87■□□□□ 0.29
USH1C-208ENST00000529563 MEGF6O75095 1541 aa16.86■□□□□ 0.29
USH1C-208ENST00000529563 PPM1GO15355 546 aaPredicted RBP16.86■□□□□ 0.29
USH1C-208ENST00000529563 SGIP1Q9BQI5 828 aa16.86■□□□□ 0.29
USH1C-208ENST00000529563 RGPD2P0DJD1 1756 aa16.85■□□□□ 0.29
USH1C-208ENST00000529563 POLR3GLQ9BT43 218 aa16.85■□□□□ 0.29
USH1C-208ENST00000529563 HSP90AB2PQ58FF8 381 aa16.84■□□□□ 0.29
USH1C-208ENST00000529563 PNPLA7Q6ZV29 1317 aa16.84■□□□□ 0.29
USH1C-208ENST00000529563 PCDH11XQ9BZA7 1347 aa16.84■□□□□ 0.29
USH1C-208ENST00000529563 PCDH11YQ9BZA8 1340 aa16.84■□□□□ 0.29
USH1C-208ENST00000529563 FLT4P35916 1363 aa16.84■□□□□ 0.29
USH1C-208ENST00000529563 HMGB2P26583 209 aaKnown RBP16.83■□□□□ 0.28
USH1C-208ENST00000529563 KIF20BQ96Q89 1820 aa16.83■□□□□ 0.28
USH1C-208ENST00000529563 INSRP06213 1382 aa16.82■□□□□ 0.28
USH1C-208ENST00000529563 NSD3Q9BZ95 1437 aa16.81■□□□□ 0.28
USH1C-208ENST00000529563 CLSPNQ9HAW4 1339 aa16.81■□□□□ 0.28
USH1C-208ENST00000529563 MPRIPQ6WCQ1 1025 aa16.81■□□□□ 0.28
USH1C-208ENST00000529563 NSD2O96028 1365 aa16.8■□□□□ 0.28
USH1C-208ENST00000529563 MAP3K5Q99683 1374 aa16.8■□□□□ 0.28
USH1C-208ENST00000529563 ZNF784Q8NCA9 323 aaPredicted RBP16.8■□□□□ 0.28
USH1C-208ENST00000529563 KIF24Q5T7B8 1368 aa16.79■□□□□ 0.28
USH1C-208ENST00000529563 EMILIN1Q9Y6C2 1016 aa16.79■□□□□ 0.28
USH1C-208ENST00000529563 SHANK3Q9BYB0 1731 aa16.79■□□□□ 0.28
USH1C-208ENST00000529563 LY75O60449 1722 aa16.78■□□□□ 0.28
USH1C-208ENST00000529563 QSER1Q2KHR3 1735 aa16.78■□□□□ 0.28
USH1C-208ENST00000529563 MSL1Q68DK7 614 aa16.77■□□□□ 0.28
USH1C-208ENST00000529563 SMARCC1Q92922 1105 aaPredicted RBP16.77■□□□□ 0.28
USH1C-208ENST00000529563 SPG7Q9UQ90 795 aa16.77■□□□□ 0.28
USH1C-208ENST00000529563 PALLDQ8WX93 1383 aa16.77■□□□□ 0.27
USH1C-208ENST00000529563 COL23A1Q86Y22 540 aaPredicted RBP16.76■□□□□ 0.27
USH1C-208ENST00000529563 FLAD1Q8NFF5 587 aa16.76■□□□□ 0.27
USH1C-208ENST00000529563 AK7Q96M32 723 aa16.76■□□□□ 0.27
USH1C-208ENST00000529563 CARD14Q9BXL6 1004 aa16.76■□□□□ 0.27
USH1C-208ENST00000529563 TIMELESSQ9UNS1 1208 aa16.76■□□□□ 0.27
USH1C-208ENST00000529563 TUBGCP6Q96RT7 1819 aa16.75■□□□□ 0.27
USH1C-208ENST00000529563 CHD4Q14839 1912 aa16.74■□□□□ 0.27
USH1C-208ENST00000529563 TNNT2P45379 298 aaPredicted RBP16.74■□□□□ 0.27
USH1C-208ENST00000529563 NLGN2Q8NFZ4 835 aa16.74■□□□□ 0.27
USH1C-208ENST00000529563 CYP27B1O15528 508 aa16.73■□□□□ 0.27
USH1C-208ENST00000529563 PHF14O94880 888 aa16.72■□□□□ 0.27
USH1C-208ENST00000529563 TMOD3Q9NYL9 352 aa16.72■□□□□ 0.27
USH1C-208ENST00000529563 C5P01031 1676 aa16.72■□□□□ 0.27
USH1C-208ENST00000529563 GRIN3BO60391 1043 aa16.71■□□□□ 0.27
USH1C-208ENST00000529563 WASHC2AQ641Q2 1341 aa16.7■□□□□ 0.26
USH1C-208ENST00000529563 PIGBQ92521 554 aa16.7■□□□□ 0.26
USH1C-208ENST00000529563 EYA1Q99502 592 aa16.7■□□□□ 0.26
USH1C-208ENST00000529563 UTRNP46939 3433 aa16.69■□□□□ 0.26
USH1C-208ENST00000529563 IFNL2Q8IZJ0 200 aa16.69■□□□□ 0.26
USH1C-208ENST00000529563 SENP3-EIF4A1A0A087X0R7 540 aa16.68■□□□□ 0.26
USH1C-208ENST00000529563 GIGYF1O75420 1035 aaPredicted RBP16.68■□□□□ 0.26
USH1C-208ENST00000529563 POLKQ9UBT6 870 aa16.68■□□□□ 0.26
USH1C-208ENST00000529563 EIF4G2P78344 907 aaKnown RBP eCLIP16.67■□□□□ 0.26
USH1C-208ENST00000529563 PKD1L3Q7Z443 1732 aa16.67■□□□□ 0.26
USH1C-208ENST00000529563 MAP2P11137 1827 aaKnown RBP16.66■□□□□ 0.26
USH1C-208ENST00000529563 LOC102724428A0A0B4J2F2 783 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 ATP6V1AP38606 617 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 SIK1P57059 783 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 NKX1-1Q15270 411 aaPredicted RBP16.66■□□□□ 0.26
USH1C-208ENST00000529563 COL24A1Q17RW2 1714 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.66■□□□□ 0.26
USH1C-208ENST00000529563 CD2APQ9Y5K6 639 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 ITGB4P16144 1822 aa16.66■□□□□ 0.26
USH1C-208ENST00000529563 C4BP0C0L5 1744 aa16.65■□□□□ 0.26
USH1C-208ENST00000529563 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.65■□□□□ 0.26
USH1C-208ENST00000529563 GNPATO15228 680 aa16.65■□□□□ 0.26
USH1C-208ENST00000529563 PHKG2P15735 406 aa16.65■□□□□ 0.26
USH1C-208ENST00000529563 YBX3P16989 372 aaKnown RBP eCLIP16.65■□□□□ 0.26
USH1C-208ENST00000529563 C1QTNF8P60827 252 aa16.65■□□□□ 0.26
USH1C-208ENST00000529563 EIF4A2Q14240 407 aaKnown RBP16.65■□□□□ 0.26
USH1C-208ENST00000529563 TOGARAM1Q9Y4F4 1720 aa16.65■□□□□ 0.26
USH1C-208ENST00000529563 TAF1LQ8IZX4 1826 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 ANKRD26Q9UPS8 1709 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 HSPA5P11021 654 aaKnown RBP16.63■□□□□ 0.25
USH1C-208ENST00000529563 SSFA2P28290 1259 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 LINC00116Q8NCU8 138 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 PANK3Q9H999 370 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 ASAP1Q9ULH1 1129 aa16.63■□□□□ 0.25
USH1C-208ENST00000529563 NCAPD2Q15021 1401 aa16.62■□□□□ 0.25
USH1C-208ENST00000529563 HSP90AB1P08238 724 aaKnown RBP16.62■□□□□ 0.25
USH1C-208ENST00000529563 PLEKHO1Q53GL0 409 aaPredicted RBP16.62■□□□□ 0.25
USH1C-208ENST00000529563 SMIM5Q71RC9 77 aa16.62■□□□□ 0.25
USH1C-208ENST00000529563 MORC1Q86VD1 984 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms