RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.24□□□□□ -0.93
CD44-230ENST00000528922 PKDCCQ504Y2 493 aa9.24□□□□□ -0.93
CD44-230ENST00000528922 NISCHQ9Y2I1 1504 aa9.24□□□□□ -0.93
CD44-230ENST00000528922 CAPN5O15484 640 aaPredicted RBP9.23□□□□□ -0.93
CD44-230ENST00000528922 Q6ZVU0 165 aa9.23□□□□□ -0.93
CD44-230ENST00000528922 MYCP01106 439 aaPredicted RBP9.22□□□□□ -0.93
CD44-230ENST00000528922 KDF1Q8NAX2 398 aaPredicted RBP9.22□□□□□ -0.93
CD44-230ENST00000528922 VRTNQ9H8Y1 702 aa9.22□□□□□ -0.93
CD44-230ENST00000528922 NOD1Q9Y239 953 aa9.22□□□□□ -0.93
CD44-230ENST00000528922 PCDHGA11Q9Y5H2 935 aa9.22□□□□□ -0.93
CD44-230ENST00000528922 CLDN10P78369 228 aa9.21□□□□□ -0.94
CD44-230ENST00000528922 SIRT1Q96EB6 747 aa9.21□□□□□ -0.94
CD44-230ENST00000528922 ZBTB7BO15156 539 aaPredicted RBP9.2□□□□□ -0.94
CD44-230ENST00000528922 SMCPP49901 116 aaPredicted RBP9.2□□□□□ -0.94
CD44-230ENST00000528922 GTF2IP78347 998 aa9.2□□□□□ -0.94
CD44-230ENST00000528922 PBXIP1Q96AQ6 731 aa9.2□□□□□ -0.94
CD44-230ENST00000528922 AGBL1Q96MI9 1066 aa9.2□□□□□ -0.94
CD44-230ENST00000528922 ESF1Q9H501 851 aaKnown RBP9.2□□□□□ -0.94
CD44-230ENST00000528922 ATP5J2-PTCD1G3V325 749 aa9.19□□□□□ -0.94
CD44-230ENST00000528922 ADH1AP07327 375 aa9.19□□□□□ -0.94
CD44-230ENST00000528922 OGFOD1Q8N543 542 aa9.19□□□□□ -0.94
CD44-230ENST00000528922 MEIOBQ8N635 442 aa9.19□□□□□ -0.94
CD44-230ENST00000528922 KIAA1024Q9UPX6 916 aa9.19□□□□□ -0.94
CD44-230ENST00000528922 ST8SIA5O15466 376 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 STAU1O95793 577 aaKnown RBP9.18□□□□□ -0.94
CD44-230ENST00000528922 RASA1P20936 1047 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 CTC1Q2NKJ3 1217 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 CRTC2Q53ET0 693 aaPredicted RBP9.18□□□□□ -0.94
CD44-230ENST00000528922 TRIM50Q86XT4 487 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 CRIPAKQ8N1N5 446 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 TRIM52Q96A61 297 aa9.18□□□□□ -0.94
CD44-230ENST00000528922 AXIN1O15169 862 aa9.17□□□□□ -0.94
CD44-230ENST00000528922 AAASQ9NRG9 546 aa9.17□□□□□ -0.94
CD44-230ENST00000528922 DNAAF2Q9NVR5 837 aaKnown RBP9.17□□□□□ -0.94
CD44-230ENST00000528922 PPP1R15AO75807 674 aaPredicted RBP9.16□□□□□ -0.94
CD44-230ENST00000528922 DKK1O94907 266 aa9.16□□□□□ -0.94
CD44-230ENST00000528922 PTGIRP43119 386 aa9.16□□□□□ -0.94
CD44-230ENST00000528922 RELBQ01201 579 aa9.16□□□□□ -0.94
CD44-230ENST00000528922 PTK7Q13308 1070 aa9.16□□□□□ -0.94
CD44-230ENST00000528922 CYP2U1Q7Z449 544 aa9.16□□□□□ -0.94
CD44-230ENST00000528922 ATP1A2P50993 1020 aa9.15□□□□□ -0.94
CD44-230ENST00000528922 SCNN1DP51172 638 aa9.15□□□□□ -0.94
CD44-230ENST00000528922 LARP1Q6PKG0 1096 aaKnown RBP9.15□□□□□ -0.94
CD44-230ENST00000528922 TRIM46Q7Z4K8 759 aa9.15□□□□□ -0.94
CD44-230ENST00000528922 ZNF594Q96JF6 807 aaPredicted RBP9.15□□□□□ -0.94
CD44-230ENST00000528922 ZNF395Q9H8N7 513 aaPredicted RBP9.15□□□□□ -0.94
CD44-230ENST00000528922 DACH1Q9UI36 760 aa9.15□□□□□ -0.94
CD44-230ENST00000528922 FAM196BA6NMK8 535 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L15C9J2P7 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L10C9JJH3 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L13C9JLJ4 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L12C9JPN9 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L11C9JVI0 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L21D6R901 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L18D6R9N7 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L22D6RA61 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L17D6RBQ6 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L19D6RCP7 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L20D6RJB6 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 LCE2BO14633 110 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 ATG7O95352 703 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 GNRH1P01148 92 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 BMP1P13497 986 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 PSME1Q06323 249 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 USP17L24Q0WX57 530 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 CCDC102BQ68D86 513 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 LARGE2Q8N3Y3 721 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 ETNK1Q9HBU6 452 aa9.14□□□□□ -0.95
CD44-230ENST00000528922 A0A1W2PRU2 124 aa9.13□□□□□ -0.95
CD44-230ENST00000528922 TMEM229AB2RXF0 380 aa9.13□□□□□ -0.95
CD44-230ENST00000528922 MRPL14Q6P1L8 145 aaKnown RBP9.13□□□□□ -0.95
CD44-230ENST00000528922 TPCN2Q8NHX9 752 aa9.13□□□□□ -0.95
CD44-230ENST00000528922 TSEN34Q9BSV6 310 aaKnown RBP9.13□□□□□ -0.95
CD44-230ENST00000528922 ARHGEF10LQ9HCE6 1279 aa9.13□□□□□ -0.95
CD44-230ENST00000528922 RAB6BQ9NRW1 208 aa9.13□□□□□ -0.95
CD44-230ENST00000528922 Q6ZNB5 142 aa9.12□□□□□ -0.95
CD44-230ENST00000528922 SIX5Q8N196 739 aa9.12□□□□□ -0.95
CD44-230ENST00000528922 LINC00528Q8N1L1 170 aa9.12□□□□□ -0.95
CD44-230ENST00000528922 ARXQ96QS3 562 aa9.12□□□□□ -0.95
CD44-230ENST00000528922 IL2RAP01589 272 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 GDF10P55107 478 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 DPYDQ12882 1025 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 C6orf118Q5T5N4 469 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 ANKMY2Q8IV38 441 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.11□□□□□ -0.95
CD44-230ENST00000528922 XAGE2Q96GT9 111 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 ZMIZ1Q9ULJ6 1067 aa9.11□□□□□ -0.95
CD44-230ENST00000528922 SFI1A8K8P3 1242 aa9.1□□□□□ -0.95
CD44-230ENST00000528922 SPINT1O43278 529 aa9.1□□□□□ -0.95
CD44-230ENST00000528922 INHAP05111 366 aa9.1□□□□□ -0.95
CD44-230ENST00000528922 ELOAQ14241 798 aaKnown RBP9.1□□□□□ -0.95
CD44-230ENST00000528922 INSM2Q96T92 566 aaPredicted RBP9.1□□□□□ -0.95
CD44-230ENST00000528922 ATP13A2Q9NQ11 1180 aa9.1□□□□□ -0.95
CD44-230ENST00000528922 NOVA2Q9UNW9 492 aaKnown RBP9.1□□□□□ -0.95
CD44-230ENST00000528922 ACIN1Q9UKV3 1341 aaKnown RBP9.1□□□□□ -0.95
CD44-230ENST00000528922 WASLO00401 505 aaPredicted RBP9.09□□□□□ -0.95
CD44-230ENST00000528922 UPP2O95045 317 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 BMP2P12643 396 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 CLN3Q13286 438 aa9.09□□□□□ -0.95
CD44-230ENST00000528922 STK32AQ8WU08 396 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms