RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 CD2APQ9Y5K6 639 aa14.9□□□□□ -0.02
CPSF1-203ENST00000527916 TUBGCP6Q96RT7 1819 aa14.89□□□□□ -0.03
CPSF1-203ENST00000527916 SBNO2Q9Y2G9 1366 aa14.89□□□□□ -0.03
CPSF1-203ENST00000527916 HDGFL2Q7Z4V5 671 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-203ENST00000527916 MON2Q7Z3U7 1717 aa14.89□□□□□ -0.03
CPSF1-203ENST00000527916 COL23A1Q86Y22 540 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-203ENST00000527916 CARD11Q9BXL7 1154 aa14.88□□□□□ -0.03
CPSF1-203ENST00000527916 USP54Q70EL1 1684 aa14.87□□□□□ -0.03
CPSF1-203ENST00000527916 FLAD1Q8NFF5 587 aa14.87□□□□□ -0.03
CPSF1-203ENST00000527916 ZNF526Q8TF50 670 aaPredicted RBP14.87□□□□□ -0.03
CPSF1-203ENST00000527916 IP6K1Q92551 441 aa14.87□□□□□ -0.03
CPSF1-203ENST00000527916 LTV1Q96GA3 475 aaPredicted RBP14.87□□□□□ -0.03
CPSF1-203ENST00000527916 USP47Q96K76 1375 aa14.86□□□□□ -0.03
CPSF1-203ENST00000527916 LY75O60449 1722 aa14.86□□□□□ -0.03
CPSF1-203ENST00000527916 MSL1Q68DK7 614 aa14.86□□□□□ -0.03
CPSF1-203ENST00000527916 ZCRB1Q8TBF4 217 aaKnown RBP14.86□□□□□ -0.03
CPSF1-203ENST00000527916 TMC1Q8TDI8 760 aa14.86□□□□□ -0.03
CPSF1-203ENST00000527916 FAM208AQ9UK61 1670 aaKnown RBP14.85□□□□□ -0.03
CPSF1-203ENST00000527916 ADCY9O60503 1353 aa14.85□□□□□ -0.03
CPSF1-203ENST00000527916 PUS7Q96PZ0 661 aaKnown RBP14.84□□□□□ -0.03
CPSF1-203ENST00000527916 TERF2IPQ9NYB0 399 aa14.84□□□□□ -0.03
CPSF1-203ENST00000527916 NSD2O96028 1365 aa14.84□□□□□ -0.03
CPSF1-203ENST00000527916 EDC4Q6P2E9 1401 aaKnown RBP14.83□□□□□ -0.03
CPSF1-203ENST00000527916 DOT1LQ8TEK3 1739 aa14.83□□□□□ -0.03
CPSF1-203ENST00000527916 SLC24A1O60721 1099 aa14.83□□□□□ -0.04
CPSF1-203ENST00000527916 CD163L1Q9NR16 1453 aa14.81□□□□□ -0.04
CPSF1-203ENST00000527916 AMPHP49418 695 aa14.8□□□□□ -0.04
CPSF1-203ENST00000527916 APLP1P51693 650 aa14.8□□□□□ -0.04
CPSF1-203ENST00000527916 SLC12A5Q9H2X9 1139 aa14.8□□□□□ -0.04
CPSF1-203ENST00000527916 CGNL1Q0VF96 1302 aa14.8□□□□□ -0.04
CPSF1-203ENST00000527916 IGSF1Q8N6C5 1336 aa14.79□□□□□ -0.04
CPSF1-203ENST00000527916 COG3Q96JB2 828 aa14.79□□□□□ -0.04
CPSF1-203ENST00000527916 TIMELESSQ9UNS1 1208 aa14.79□□□□□ -0.04
CPSF1-203ENST00000527916 HOXC9P31274 260 aa14.78□□□□□ -0.04
CPSF1-203ENST00000527916 RAPGEF4Q8WZA2 1011 aa14.78□□□□□ -0.04
CPSF1-203ENST00000527916 AK7Q96M32 723 aa14.78□□□□□ -0.04
CPSF1-203ENST00000527916 C5P01031 1676 aa14.77□□□□□ -0.04
CPSF1-203ENST00000527916 A0A1W2PP64 1363 aa14.77□□□□□ -0.04
CPSF1-203ENST00000527916 MAP3K19Q56UN5 1328 aa14.77□□□□□ -0.04
CPSF1-203ENST00000527916 CLSPNQ9HAW4 1339 aa14.77□□□□□ -0.04
CPSF1-203ENST00000527916 KIF3CO14782 793 aa14.77□□□□□ -0.05
CPSF1-203ENST00000527916 MEGF6O75095 1541 aa14.76□□□□□ -0.05
CPSF1-203ENST00000527916 NSD3Q9BZ95 1437 aa14.76□□□□□ -0.05
CPSF1-203ENST00000527916 TESK2Q96S53 571 aa14.76□□□□□ -0.05
CPSF1-203ENST00000527916 PALLDQ8WX93 1383 aa14.75□□□□□ -0.05
CPSF1-203ENST00000527916 ST20-MTHFSA0A0A6YYL1 179 aa14.75□□□□□ -0.05
CPSF1-203ENST00000527916 SMARCC1Q92922 1105 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-203ENST00000527916 WWC3Q9ULE0 1092 aa14.75□□□□□ -0.05
CPSF1-203ENST00000527916 PCDH11XQ9BZA7 1347 aa14.74□□□□□ -0.05
CPSF1-203ENST00000527916 PCDH11YQ9BZA8 1340 aa14.74□□□□□ -0.05
CPSF1-203ENST00000527916 TOMM70O94826 608 aa14.74□□□□□ -0.05
CPSF1-203ENST00000527916 TATP17735 454 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-203ENST00000527916 MPRIPQ6WCQ1 1025 aa14.74□□□□□ -0.05
CPSF1-203ENST00000527916 SMG6Q86US8 1419 aaKnown RBP14.74□□□□□ -0.05
CPSF1-203ENST00000527916 NBPF6Q5VWK0 638 aa14.73□□□□□ -0.05
CPSF1-203ENST00000527916 NBPF4Q96M43 638 aa14.73□□□□□ -0.05
CPSF1-203ENST00000527916 TAF1LQ8IZX4 1826 aa14.73□□□□□ -0.05
CPSF1-203ENST00000527916 RGPD2P0DJD1 1756 aa14.73□□□□□ -0.05
CPSF1-203ENST00000527916 RTL1A6NKG5 1358 aa14.73□□□□□ -0.05
CPSF1-203ENST00000527916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.72□□□□□ -0.05
CPSF1-203ENST00000527916 PHF14O94880 888 aa14.72□□□□□ -0.05
CPSF1-203ENST00000527916 SSFA2P28290 1259 aa14.72□□□□□ -0.05
CPSF1-203ENST00000527916 DNAJC5GQ8N7S2 189 aa14.71□□□□□ -0.05
CPSF1-203ENST00000527916 C4BP0C0L5 1744 aa14.71□□□□□ -0.05
CPSF1-203ENST00000527916 PCNTO95613 3336 aa14.7□□□□□ -0.06
CPSF1-203ENST00000527916 FBLN1P23142 703 aa14.7□□□□□ -0.06
CPSF1-203ENST00000527916 USHBP1Q8N6Y0 703 aa14.7□□□□□ -0.06
CPSF1-203ENST00000527916 UBR3Q6ZT12 1888 aa14.68□□□□□ -0.06
CPSF1-203ENST00000527916 TMF1P82094 1093 aa14.68□□□□□ -0.06
CPSF1-203ENST00000527916 RRS1Q15050 365 aaKnown RBP14.68□□□□□ -0.06
CPSF1-203ENST00000527916 C16orf71Q8IYS4 520 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-203ENST00000527916 CICQ96RK0 1608 aaPredicted RBP14.67□□□□□ -0.06
CPSF1-203ENST00000527916 AMIGO3Q86WK7 504 aa14.67□□□□□ -0.06
CPSF1-203ENST00000527916 PCGF6Q9BYE7 350 aa14.67□□□□□ -0.06
CPSF1-203ENST00000527916 LOC102724428A0A0B4J2F2 783 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 CYP27B1O15528 508 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 MMP10P09238 476 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 SIK1P57059 783 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 TGFB2P61812 414 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 CDCA8Q53HL2 280 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 ARHGAP27Q6ZUM4 889 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 RBM46Q8TBY0 533 aaKnown RBP14.66□□□□□ -0.06
CPSF1-203ENST00000527916 BCS1LQ9Y276 419 aa14.66□□□□□ -0.06
CPSF1-203ENST00000527916 ITGB4P16144 1822 aa14.65□□□□□ -0.06
CPSF1-203ENST00000527916 GNPATO15228 680 aa14.65□□□□□ -0.06
CPSF1-203ENST00000527916 SMIM5Q71RC9 77 aa14.65□□□□□ -0.06
CPSF1-203ENST00000527916 PIGBQ92521 554 aa14.65□□□□□ -0.06
CPSF1-203ENST00000527916 TOGARAM1Q9Y4F4 1720 aa14.65□□□□□ -0.06
CPSF1-203ENST00000527916 INSRP06213 1382 aa14.64□□□□□ -0.07
CPSF1-203ENST00000527916 HSP90AB2PQ58FF8 381 aa14.64□□□□□ -0.07
CPSF1-203ENST00000527916 LINC00116Q8NCU8 138 aa14.64□□□□□ -0.07
CPSF1-203ENST00000527916 KLRG1Q96E93 195 aa14.64□□□□□ -0.07
CPSF1-203ENST00000527916 NMRK2Q9NPI5 230 aa14.64□□□□□ -0.07
CPSF1-203ENST00000527916 FSTL1Q12841 308 aa14.63□□□□□ -0.07
CPSF1-203ENST00000527916 NLGN1Q8N2Q7 840 aa14.63□□□□□ -0.07
CPSF1-203ENST00000527916 TMOD3Q9NYL9 352 aa14.63□□□□□ -0.07
CPSF1-203ENST00000527916 SPG7Q9UQ90 795 aa14.63□□□□□ -0.07
CPSF1-203ENST00000527916 PXDNLA1KZ92 1463 aa14.63□□□□□ -0.07
CPSF1-203ENST00000527916 FLT4P35916 1363 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 KIF24Q5T7B8 1368 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms