RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 ZCRB1Q8TBF4 217 aaKnown RBP21.3■■□□□ 1
CAPN1-213ENST00000527897 TATP17735 454 aaPredicted RBP21.29■■□□□ 1
CAPN1-213ENST00000527897 POLKQ9UBT6 870 aa21.29■■□□□ 1
CAPN1-213ENST00000527897 RGPD3A6NKT7 1758 aaPredicted RBP21.28■■□□□ 1
CAPN1-213ENST00000527897 RGPD4Q7Z3J3 1758 aa21.28■■□□□ 1
CAPN1-213ENST00000527897 MORC1Q86VD1 984 aa21.28■■□□□ 1
CAPN1-213ENST00000527897 SYTL4Q96C24 671 aaPredicted RBP21.27■■□□□ 1
CAPN1-213ENST00000527897 WASHC2AQ641Q2 1341 aa21.27■□□□□ 0.99
CAPN1-213ENST00000527897 SHANK3Q9BYB0 1731 aa21.26■□□□□ 0.99
CAPN1-213ENST00000527897 NSD2O96028 1365 aa21.25■□□□□ 0.99
CAPN1-213ENST00000527897 BTAF1O14981 1849 aa21.25■□□□□ 0.99
CAPN1-213ENST00000527897 TXNRD1Q16881 649 aa21.24■□□□□ 0.99
CAPN1-213ENST00000527897 DOT1LQ8TEK3 1739 aa21.24■□□□□ 0.99
CAPN1-213ENST00000527897 CNGB1Q14028 1251 aaPredicted RBP21.23■□□□□ 0.99
CAPN1-213ENST00000527897 PROM2Q8N271 834 aa21.23■□□□□ 0.99
CAPN1-213ENST00000527897 ANO8Q9HCE9 1232 aaPredicted RBP21.22■□□□□ 0.99
CAPN1-213ENST00000527897 PRIM1P49642 420 aaKnown RBP21.21■□□□□ 0.99
CAPN1-213ENST00000527897 EIF4A2Q14240 407 aaKnown RBP21.21■□□□□ 0.99
CAPN1-213ENST00000527897 EYA1Q99502 592 aa21.21■□□□□ 0.99
CAPN1-213ENST00000527897 LRP5O75197 1615 aa21.2■□□□□ 0.98
CAPN1-213ENST00000527897 PCDH11XQ9BZA7 1347 aa21.19■□□□□ 0.98
CAPN1-213ENST00000527897 PCDH11YQ9BZA8 1340 aa21.19■□□□□ 0.98
CAPN1-213ENST00000527897 AMER1Q5JTC6 1135 aaPredicted RBP21.18■□□□□ 0.98
CAPN1-213ENST00000527897 CC2D1BQ5T0F9 858 aaKnown RBP21.18■□□□□ 0.98
CAPN1-213ENST00000527897 STK32BQ9NY57 414 aa21.18■□□□□ 0.98
CAPN1-213ENST00000527897 CYP27B1O15528 508 aa21.15■□□□□ 0.98
CAPN1-213ENST00000527897 SPG7Q9UQ90 795 aa21.15■□□□□ 0.98
CAPN1-213ENST00000527897 PKD1L3Q7Z443 1732 aa21.15■□□□□ 0.98
CAPN1-213ENST00000527897 NCAPD2Q15021 1401 aa21.14■□□□□ 0.98
CAPN1-213ENST00000527897 PER1O15534 1290 aaPredicted RBP21.12■□□□□ 0.97
CAPN1-213ENST00000527897 KCNQ4P56696 695 aa21.12■□□□□ 0.97
CAPN1-213ENST00000527897 SLC15A2Q16348 729 aa21.12■□□□□ 0.97
CAPN1-213ENST00000527897 MPRIPQ6WCQ1 1025 aa21.11■□□□□ 0.97
CAPN1-213ENST00000527897 PDGFDQ9GZP0 370 aaPredicted RBP21.11■□□□□ 0.97
CAPN1-213ENST00000527897 LRRC4BQ9NT99 713 aa21.11■□□□□ 0.97
CAPN1-213ENST00000527897 IGSF1Q8N6C5 1336 aa21.1■□□□□ 0.97
CAPN1-213ENST00000527897 MTHFSP49914 203 aa21.09■□□□□ 0.97
CAPN1-213ENST00000527897 SPON1Q9HCB6 807 aa21.09■□□□□ 0.97
CAPN1-213ENST00000527897 TOGARAM1Q9Y4F4 1720 aa21.09■□□□□ 0.97
CAPN1-213ENST00000527897 ZBTB7AO95365 584 aa21.08■□□□□ 0.97
CAPN1-213ENST00000527897 SLC27A3Q5K4L6 730 aa21.08■□□□□ 0.97
CAPN1-213ENST00000527897 PPP1R1BQ9UD71 204 aaPredicted RBP21.08■□□□□ 0.97
CAPN1-213ENST00000527897 ITGB4P16144 1822 aa21.07■□□□□ 0.96
CAPN1-213ENST00000527897 ZNF827Q17R98 1081 aa21.07■□□□□ 0.96
CAPN1-213ENST00000527897 AEBP1Q8IUX7 1158 aa21.07■□□□□ 0.96
CAPN1-213ENST00000527897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.07■□□□□ 0.96
CAPN1-213ENST00000527897 CCNL1Q9UK58 526 aaPredicted RBP21.07■□□□□ 0.96
CAPN1-213ENST00000527897 CASZ1Q86V15 1759 aa21.07■□□□□ 0.96
CAPN1-213ENST00000527897 PAPPAQ13219 1627 aa21.07■□□□□ 0.96
CAPN1-213ENST00000527897 IFNL2Q8IZJ0 200 aa21.06■□□□□ 0.96
CAPN1-213ENST00000527897 LY75O60449 1722 aa21.06■□□□□ 0.96
CAPN1-213ENST00000527897 PHKG2P15735 406 aa21.05■□□□□ 0.96
CAPN1-213ENST00000527897 SULT6B1Q6IMI4 303 aa21.05■□□□□ 0.96
CAPN1-213ENST00000527897 ATF5Q9Y2D1 282 aaPredicted RBP21.05■□□□□ 0.96
CAPN1-213ENST00000527897 IL13P35225 146 aa21.04■□□□□ 0.96
CAPN1-213ENST00000527897 PLEKHO1Q53GL0 409 aaPredicted RBP21.04■□□□□ 0.96
CAPN1-213ENST00000527897 NKX1-1Q15270 411 aaPredicted RBP21.03■□□□□ 0.96
CAPN1-213ENST00000527897 ZNF530Q6P9A1 599 aaPredicted RBP21.03■□□□□ 0.96
CAPN1-213ENST00000527897 PALLDQ8WX93 1383 aa21.02■□□□□ 0.96
CAPN1-213ENST00000527897 PIGBQ92521 554 aa21.02■□□□□ 0.96
CAPN1-213ENST00000527897 TMOD3Q9NYL9 352 aa21.02■□□□□ 0.96
CAPN1-213ENST00000527897 TFCP2L1Q9NZI6 479 aa21.02■□□□□ 0.96
CAPN1-213ENST00000527897 AKT1S1Q96B36 256 aa21.01■□□□□ 0.95
CAPN1-213ENST00000527897 NPC1L1Q9UHC9 1359 aa21■□□□□ 0.95
CAPN1-213ENST00000527897 HMOX1P09601 288 aa21■□□□□ 0.95
CAPN1-213ENST00000527897 DIAPH1O60610 1272 aaKnown RBP20.99■□□□□ 0.95
CAPN1-213ENST00000527897 AMOTQ4VCS5 1084 aa20.99■□□□□ 0.95
CAPN1-213ENST00000527897 C1orf141Q5JVX7 400 aa20.99■□□□□ 0.95
CAPN1-213ENST00000527897 SMARCC1Q92922 1105 aaPredicted RBP20.99■□□□□ 0.95
CAPN1-213ENST00000527897 TUBGCP6Q96RT7 1819 aa20.98■□□□□ 0.95
CAPN1-213ENST00000527897 MSH5O43196 834 aa20.97■□□□□ 0.95
CAPN1-213ENST00000527897 HSP90AB1P08238 724 aaKnown RBP20.97■□□□□ 0.95
CAPN1-213ENST00000527897 MTFR1LQ9H019 292 aa20.97■□□□□ 0.95
CAPN1-213ENST00000527897 PLEKHG2Q9H7P9 1386 aa20.97■□□□□ 0.95
CAPN1-213ENST00000527897 C5P01031 1676 aa20.96■□□□□ 0.95
CAPN1-213ENST00000527897 ASAP1Q9ULH1 1129 aa20.96■□□□□ 0.95
CAPN1-213ENST00000527897 KDRP35968 1356 aa20.96■□□□□ 0.95
CAPN1-213ENST00000527897 U2SURPO15042 1029 aaKnown RBP20.95■□□□□ 0.94
CAPN1-213ENST00000527897 DCAF5Q96JK2 942 aa20.95■□□□□ 0.94
CAPN1-213ENST00000527897 PNPLA7Q6ZV29 1317 aa20.95■□□□□ 0.94
CAPN1-213ENST00000527897 QSER1Q2KHR3 1735 aa20.94■□□□□ 0.94
CAPN1-213ENST00000527897 TAF1LQ8IZX4 1826 aa20.94■□□□□ 0.94
CAPN1-213ENST00000527897 PTGER2P43116 358 aa20.93■□□□□ 0.94
CAPN1-213ENST00000527897 CABP4P57796 275 aa20.93■□□□□ 0.94
CAPN1-213ENST00000527897 LOC102724428A0A0B4J2F2 783 aa20.92■□□□□ 0.94
CAPN1-213ENST00000527897 ERVV-2B6SEH9 535 aa20.92■□□□□ 0.94
CAPN1-213ENST00000527897 SIK1P57059 783 aa20.92■□□□□ 0.94
CAPN1-213ENST00000527897 ATG3Q9NT62 314 aa20.92■□□□□ 0.94
CAPN1-213ENST00000527897 KDM6AO15550 1401 aaPredicted RBP20.92■□□□□ 0.94
CAPN1-213ENST00000527897 AK7Q96M32 723 aa20.91■□□□□ 0.94
CAPN1-213ENST00000527897 CFAP53Q96M91 514 aa20.91■□□□□ 0.94
CAPN1-213ENST00000527897 COL3A1P02461 1466 aaPredicted RBP20.9■□□□□ 0.94
CAPN1-213ENST00000527897 RBM42Q9BTD8 480 aaKnown RBP20.9■□□□□ 0.94
CAPN1-213ENST00000527897 C4BP0C0L5 1744 aa20.9■□□□□ 0.94
CAPN1-213ENST00000527897 HMGB2P26583 209 aaKnown RBP20.89■□□□□ 0.93
CAPN1-213ENST00000527897 ATP6V1AP38606 617 aa20.89■□□□□ 0.93
CAPN1-213ENST00000527897 PPP2R1AP30153 589 aa20.88■□□□□ 0.93
CAPN1-213ENST00000527897 AKAP4Q5JQC9 854 aa20.88■□□□□ 0.93
CAPN1-213ENST00000527897 COL23A1Q86Y22 540 aaPredicted RBP20.88■□□□□ 0.93
CAPN1-213ENST00000527897 SLC16A10Q8TF71 515 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms