RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZCRB1Q8TBF4 217 aaKnown RBP33.12■■■□□ 2.89
CPSF1-202ENST00000527827 SYTL4Q96C24 671 aaPredicted RBP33.12■■■□□ 2.89
CPSF1-202ENST00000527827 COL24A1Q17RW2 1714 aa33.11■■■□□ 2.89
CPSF1-202ENST00000527827 RTL1A6NKG5 1358 aa33.11■■■□□ 2.89
CPSF1-202ENST00000527827 UTRNP46939 3433 aa33.11■■■□□ 2.89
CPSF1-202ENST00000527827 FYB1O15117 783 aa33.1■■■□□ 2.89
CPSF1-202ENST00000527827 KCNQ4P56696 695 aa33.1■■■□□ 2.89
CPSF1-202ENST00000527827 RRS1Q15050 365 aaKnown RBP33.1■■■□□ 2.89
CPSF1-202ENST00000527827 CHD4Q14839 1912 aa33.1■■■□□ 2.89
CPSF1-202ENST00000527827 PNPLA7Q6ZV29 1317 aa33.09■■■□□ 2.89
CPSF1-202ENST00000527827 SLC16A10Q8TF71 515 aa33.09■■■□□ 2.89
CPSF1-202ENST00000527827 NBPF6Q5VWK0 638 aa33.08■■■□□ 2.89
CPSF1-202ENST00000527827 NBPF4Q96M43 638 aa33.08■■■□□ 2.89
CPSF1-202ENST00000527827 GGNBP2Q9H3C7 697 aa33.08■■■□□ 2.89
CPSF1-202ENST00000527827 ZNF784Q8NCA9 323 aaPredicted RBP33.06■■■□□ 2.88
CPSF1-202ENST00000527827 TMF1P82094 1093 aa33.05■■■□□ 2.88
CPSF1-202ENST00000527827 USP47Q96K76 1375 aa33.05■■■□□ 2.88
CPSF1-202ENST00000527827 USHBP1Q8N6Y0 703 aa33.03■■■□□ 2.88
CPSF1-202ENST00000527827 TFCP2L1Q9NZI6 479 aa33.03■■■□□ 2.88
CPSF1-202ENST00000527827 KIF20BQ96Q89 1820 aa33.02■■■□□ 2.88
CPSF1-202ENST00000527827 CGNL1Q0VF96 1302 aa33.01■■■□□ 2.87
CPSF1-202ENST00000527827 SMG6Q86US8 1419 aaKnown RBP32.99■■■□□ 2.87
CPSF1-202ENST00000527827 POLD1P28340 1107 aa32.98■■■□□ 2.87
CPSF1-202ENST00000527827 CCNL1Q9UK58 526 aaPredicted RBP32.98■■■□□ 2.87
CPSF1-202ENST00000527827 INSRP06213 1382 aa32.97■■■□□ 2.87
CPSF1-202ENST00000527827 HSP90AB2PQ58FF8 381 aa32.97■■■□□ 2.87
CPSF1-202ENST00000527827 RAPGEF4Q8WZA2 1011 aa32.97■■■□□ 2.87
CPSF1-202ENST00000527827 KLHL34Q8N239 644 aa32.95■■■□□ 2.87
CPSF1-202ENST00000527827 TATP17735 454 aaPredicted RBP32.94■■■□□ 2.86
CPSF1-202ENST00000527827 GPR162Q16538 588 aa32.93■■■□□ 2.86
CPSF1-202ENST00000527827 FLT4P35916 1363 aa32.93■■■□□ 2.86
CPSF1-202ENST00000527827 KIF24Q5T7B8 1368 aa32.92■■■□□ 2.86
CPSF1-202ENST00000527827 CDCA8Q53HL2 280 aa32.91■■■□□ 2.86
CPSF1-202ENST00000527827 CARD14Q9BXL6 1004 aa32.91■■■□□ 2.86
CPSF1-202ENST00000527827 COL23A1Q86Y22 540 aaPredicted RBP32.9■■■□□ 2.86
CPSF1-202ENST00000527827 C5P01031 1676 aa32.89■■■□□ 2.86
CPSF1-202ENST00000527827 PCDH11XQ9BZA7 1347 aa32.89■■■□□ 2.86
CPSF1-202ENST00000527827 PCDH11YQ9BZA8 1340 aa32.89■■■□□ 2.86
CPSF1-202ENST00000527827 NLGN2Q8NFZ4 835 aa32.88■■■□□ 2.85
CPSF1-202ENST00000527827 TAF1LQ8IZX4 1826 aa32.87■■■□□ 2.85
CPSF1-202ENST00000527827 TOGARAM1Q9Y4F4 1720 aa32.86■■■□□ 2.85
CPSF1-202ENST00000527827 CYP27B1O15528 508 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 MSH5O43196 834 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 EMILIN1Q9Y6C2 1016 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 ITGB4P16144 1822 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 PKD1L3Q7Z443 1732 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 NSD3Q9BZ95 1437 aa32.85■■■□□ 2.85
CPSF1-202ENST00000527827 TRIM26Q12899 539 aaPredicted RBP32.83■■■□□ 2.85
CPSF1-202ENST00000527827 PALLDQ8WX93 1383 aa32.83■■■□□ 2.85
CPSF1-202ENST00000527827 PELP1Q8IZL8 1130 aaKnown RBP32.82■■■□□ 2.84
CPSF1-202ENST00000527827 NCAPD2Q15021 1401 aa32.82■■■□□ 2.84
CPSF1-202ENST00000527827 ANKRD26Q9UPS8 1709 aa32.82■■■□□ 2.84
CPSF1-202ENST00000527827 MPRIPQ6WCQ1 1025 aa32.81■■■□□ 2.84
CPSF1-202ENST00000527827 GOLGB1Q14789 3259 aaKnown RBP32.81■■■□□ 2.84
CPSF1-202ENST00000527827 MSL1Q68DK7 614 aa32.8■■■□□ 2.84
CPSF1-202ENST00000527827 MAP2P11137 1827 aaKnown RBP32.77■■■□□ 2.84
CPSF1-202ENST00000527827 C4BP0C0L5 1744 aa32.76■■■□□ 2.83
CPSF1-202ENST00000527827 YBX3P16989 372 aaKnown RBP eCLIP32.75■■■□□ 2.83
CPSF1-202ENST00000527827 PPM1GO15355 546 aaPredicted RBP32.74■■■□□ 2.83
CPSF1-202ENST00000527827 C1QTNF8P60827 252 aa32.74■■■□□ 2.83
CPSF1-202ENST00000527827 HMGB2P26583 209 aaKnown RBP32.73■■■□□ 2.83
CPSF1-202ENST00000527827 NKX1-1Q15270 411 aaPredicted RBP32.73■■■□□ 2.83
CPSF1-202ENST00000527827 FLAD1Q8NFF5 587 aa32.73■■■□□ 2.83
CPSF1-202ENST00000527827 SMARCC1Q92922 1105 aaPredicted RBP32.73■■■□□ 2.83
CPSF1-202ENST00000527827 WASHC2AQ641Q2 1341 aa32.73■■■□□ 2.83
CPSF1-202ENST00000527827 PIGBQ92521 554 aa32.72■■■□□ 2.83
CPSF1-202ENST00000527827 UBR3Q6ZT12 1888 aa32.71■■■□□ 2.83
CPSF1-202ENST00000527827 AMIGO3Q86WK7 504 aa32.7■■■□□ 2.83
CPSF1-202ENST00000527827 EYA1Q99502 592 aa32.7■■■□□ 2.83
CPSF1-202ENST00000527827 SPG7Q9UQ90 795 aa32.69■■■□□ 2.82
CPSF1-202ENST00000527827 GRIN3BO60391 1043 aa32.68■■■□□ 2.82
CPSF1-202ENST00000527827 TIMELESSQ9UNS1 1208 aa32.68■■■□□ 2.82
CPSF1-202ENST00000527827 POLKQ9UBT6 870 aa32.67■■■□□ 2.82
CPSF1-202ENST00000527827 AK7Q96M32 723 aa32.66■■■□□ 2.82
CPSF1-202ENST00000527827 CD2APQ9Y5K6 639 aa32.66■■■□□ 2.82
CPSF1-202ENST00000527827 SENP3-EIF4A1A0A087X0R7 540 aa32.65■■■□□ 2.82
CPSF1-202ENST00000527827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.65■■■□□ 2.822e-6■■□□□ 11.9
CPSF1-202ENST00000527827 SMIM5Q71RC9 77 aa32.64■■■□□ 2.82
CPSF1-202ENST00000527827 LOC102724428A0A0B4J2F2 783 aa32.61■■■□□ 2.81
CPSF1-202ENST00000527827 GIGYF1O75420 1035 aaPredicted RBP32.61■■■□□ 2.81
CPSF1-202ENST00000527827 PHF14O94880 888 aa32.61■■■□□ 2.81
CPSF1-202ENST00000527827 SIK1P57059 783 aa32.61■■■□□ 2.81
CPSF1-202ENST00000527827 LINC00116Q8NCU8 138 aa32.61■■■□□ 2.81
CPSF1-202ENST00000527827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.6■■■□□ 2.81
CPSF1-202ENST00000527827 PHKG2P15735 406 aa32.6■■■□□ 2.81
CPSF1-202ENST00000527827 TMOD3Q9NYL9 352 aa32.59■■■□□ 2.81
CPSF1-202ENST00000527827 ASAP1Q9ULH1 1129 aa32.59■■■□□ 2.81
CPSF1-202ENST00000527827 EIF4A2Q14240 407 aaKnown RBP32.58■■■□□ 2.81
CPSF1-202ENST00000527827 IFNL2Q8IZJ0 200 aa32.58■■■□□ 2.81
CPSF1-202ENST00000527827 SSFA2P28290 1259 aa32.57■■■□□ 2.8
CPSF1-202ENST00000527827 ITPK1Q13572 414 aa32.57■■■□□ 2.8
CPSF1-202ENST00000527827 TNNT2P45379 298 aaPredicted RBP32.55■■■□□ 2.8
CPSF1-202ENST00000527827 POLR3GLQ9BT43 218 aa32.55■■■□□ 2.8
CPSF1-202ENST00000527827 CLSPNQ9HAW4 1339 aa32.53■■■□□ 2.8
CPSF1-202ENST00000527827 ATG3Q9NT62 314 aa32.53■■■□□ 2.8
CPSF1-202ENST00000527827 ATP6V1AP38606 617 aa32.52■■■□□ 2.8
CPSF1-202ENST00000527827 PLEKHG2Q9H7P9 1386 aa32.52■■■□□ 2.8
CPSF1-202ENST00000527827 ATP10DQ9P241 1426 aa32.51■■■□□ 2.79
CPSF1-202ENST00000527827 IGSF1Q8N6C5 1336 aa32.5■■■□□ 2.79
CPSF1-202ENST00000527827 GNPATO15228 680 aa32.49■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms