RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 COL14A1Q05707 1796 aaKnown RBP24.49■■□□□ 1.51
VPS28-207ENST00000526977 IL16Q14005 1332 aa24.49■■□□□ 1.51
VPS28-207ENST00000526977 NUTM2BA6NNL0 878 aaPredicted RBP24.49■■□□□ 1.51
VPS28-207ENST00000526977 NUTM2EB1AL46 878 aaPredicted RBP24.49■■□□□ 1.51
VPS28-207ENST00000526977 TOM1L2Q6ZVM7 507 aa24.49■■□□□ 1.51
VPS28-207ENST00000526977 NUTM2AQ8IVF1 878 aaPredicted RBP24.49■■□□□ 1.51
VPS28-207ENST00000526977 ADAMTS2O95450 1211 aa24.48■■□□□ 1.51
VPS28-207ENST00000526977 PLEKHO1Q53GL0 409 aaPredicted RBP24.48■■□□□ 1.51
VPS28-207ENST00000526977 RAPGEF4Q8WZA2 1011 aa24.48■■□□□ 1.51
VPS28-207ENST00000526977 SPATA31A6Q5VVP1 1343 aa24.48■■□□□ 1.51
VPS28-207ENST00000526977 HSPA1LP34931 641 aa24.47■■□□□ 1.51
VPS28-207ENST00000526977 PLEKHG2Q9H7P9 1386 aa24.47■■□□□ 1.51
VPS28-207ENST00000526977 HTATSF1O43719 755 aaKnown RBP24.47■■□□□ 1.51
VPS28-207ENST00000526977 CARD10Q9BWT7 1032 aa24.47■■□□□ 1.51
VPS28-207ENST00000526977 STRN4Q9NRL3 753 aa24.47■■□□□ 1.51
VPS28-207ENST00000526977 MYH16Q9H6N6 1097 aa24.45■■□□□ 1.51
VPS28-207ENST00000526977 RTF1Q92541 710 aaKnown RBP24.45■■□□□ 1.5
VPS28-207ENST00000526977 TATP17735 454 aaPredicted RBP24.44■■□□□ 1.5
VPS28-207ENST00000526977 GNAT3A8MTJ3 354 aa24.44■■□□□ 1.5
VPS28-207ENST00000526977 LARP1Q6PKG0 1096 aaKnown RBP24.44■■□□□ 1.5
VPS28-207ENST00000526977 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.43■■□□□ 1.5
VPS28-207ENST00000526977 C20orf194Q5TEA3 1177 aa24.42■■□□□ 1.5
VPS28-207ENST00000526977 DLG5Q8TDM6 1919 aa24.42■■□□□ 1.5
VPS28-207ENST00000526977 CRB1P82279 1406 aa24.42■■□□□ 1.5
VPS28-207ENST00000526977 CRBNQ96SW2 442 aa24.4■■□□□ 1.5
VPS28-207ENST00000526977 MAP3K5Q99683 1374 aa24.39■■□□□ 1.5
VPS28-207ENST00000526977 AKAP4Q5JQC9 854 aa24.39■■□□□ 1.5
VPS28-207ENST00000526977 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.39■■□□□ 1.5
VPS28-207ENST00000526977 SPG7Q9UQ90 795 aa24.39■■□□□ 1.5
VPS28-207ENST00000526977 GNAI1P63096 354 aa24.39■■□□□ 1.49
VPS28-207ENST00000526977 DCTN1Q14203 1278 aa24.39■■□□□ 1.49
VPS28-207ENST00000526977 ZNF530Q6P9A1 599 aaPredicted RBP24.39■■□□□ 1.49
VPS28-207ENST00000526977 THUMPD2Q9BTF0 503 aaKnown RBP24.39■■□□□ 1.49
VPS28-207ENST00000526977 IFT57Q9NWB7 429 aa24.39■■□□□ 1.49
VPS28-207ENST00000526977 BCAR3O75815 825 aa24.38■■□□□ 1.49
VPS28-207ENST00000526977 MCM10Q7L590 875 aa24.38■■□□□ 1.49
VPS28-207ENST00000526977 C1orf141Q5JVX7 400 aa24.37■■□□□ 1.49
VPS28-207ENST00000526977 CFAP44Q96MT7 982 aa24.37■■□□□ 1.49
VPS28-207ENST00000526977 IL2RBP14784 551 aa24.36■■□□□ 1.49
VPS28-207ENST00000526977 MEGF6O75095 1541 aa24.36■■□□□ 1.49
VPS28-207ENST00000526977 ZNF853P0CG23 659 aa24.35■■□□□ 1.49
VPS28-207ENST00000526977 SLIT2O94813 1529 aa24.35■■□□□ 1.49
VPS28-207ENST00000526977 NGLY1Q96IV0 654 aa24.35■■□□□ 1.49
VPS28-207ENST00000526977 LAS1LQ9Y4W2 734 aaKnown RBP24.34■■□□□ 1.49
VPS28-207ENST00000526977 FANCIQ9NVI1 1328 aa24.34■■□□□ 1.49
VPS28-207ENST00000526977 PLCH1Q4KWH8 1693 aa24.34■■□□□ 1.49
VPS28-207ENST00000526977 IL17REQ8NFR9 667 aa24.34■■□□□ 1.49
VPS28-207ENST00000526977 OVOS2A0A0G2JMS6 1433 aa24.33■■□□□ 1.49
VPS28-207ENST00000526977 C8orf37Q96NL8 207 aa24.33■■□□□ 1.49
VPS28-207ENST00000526977 TSR2Q969E8 191 aaKnown RBP24.32■■□□□ 1.48
VPS28-207ENST00000526977 USP35Q9P2H5 1018 aa24.32■■□□□ 1.48
VPS28-207ENST00000526977 NWD2Q9ULI1 1742 aa24.32■■□□□ 1.48
VPS28-207ENST00000526977 IFNL2Q8IZJ0 200 aa24.32■■□□□ 1.48
VPS28-207ENST00000526977 UNC5CLQ8IV45 518 aa24.31■■□□□ 1.48
VPS28-207ENST00000526977 FNBP4Q8N3X1 1017 aaPredicted RBP24.31■■□□□ 1.48
VPS28-207ENST00000526977 THRAP3Q9Y2W1 955 aaKnown RBP24.31■■□□□ 1.48
VPS28-207ENST00000526977 CHL1O00533 1208 aa24.3■■□□□ 1.48
VPS28-207ENST00000526977 CT47B1P0C2W7 299 aaPredicted RBP24.3■■□□□ 1.48
VPS28-207ENST00000526977 ZCRB1Q8TBF4 217 aaKnown RBP24.3■■□□□ 1.48
VPS28-207ENST00000526977 CEMIPQ8WUJ3 1361 aa24.3■■□□□ 1.48
VPS28-207ENST00000526977 RARSP54136 660 aaKnown RBP24.3■■□□□ 1.48
VPS28-207ENST00000526977 PHKG2P15735 406 aa24.29■■□□□ 1.48
VPS28-207ENST00000526977 MBIPQ9NS73 344 aa24.29■■□□□ 1.48
VPS28-207ENST00000526977 LRP6O75581 1613 aa24.29■■□□□ 1.48
VPS28-207ENST00000526977 BABAM1Q9NWV8 329 aa24.28■■□□□ 1.48
VPS28-207ENST00000526977 PARP4Q9UKK3 1724 aaKnown RBP24.28■■□□□ 1.48
VPS28-207ENST00000526977 NRAPQ86VF7 1730 aa24.28■■□□□ 1.48
VPS28-207ENST00000526977 HSP90AB1P08238 724 aaKnown RBP24.28■■□□□ 1.48
VPS28-207ENST00000526977 MEX3CQ5U5Q3 659 aaKnown RBP24.28■■□□□ 1.48
VPS28-207ENST00000526977 SPATA31A1Q5TZJ5 1347 aa24.28■■□□□ 1.48
VPS28-207ENST00000526977 MPRIPQ6WCQ1 1025 aa24.27■■□□□ 1.48
VPS28-207ENST00000526977 CDCA7Q9BWT1 371 aaPredicted RBP24.27■■□□□ 1.48
VPS28-207ENST00000526977 PCDH11XQ9BZA7 1347 aa24.27■■□□□ 1.48
VPS28-207ENST00000526977 PCDH11YQ9BZA8 1340 aa24.27■■□□□ 1.48
VPS28-207ENST00000526977 RNMTO43148 476 aaKnown RBP24.27■■□□□ 1.48
VPS28-207ENST00000526977 EXOSC9Q06265 439 aaKnown RBP24.27■■□□□ 1.48
VPS28-207ENST00000526977 TAF7Q15545 349 aaPredicted RBP24.27■■□□□ 1.48
VPS28-207ENST00000526977 LGR6Q9HBX8 967 aa24.27■■□□□ 1.48
VPS28-207ENST00000526977 PKD1L3Q7Z443 1732 aa24.26■■□□□ 1.47
VPS28-207ENST00000526977 CYP27B1O15528 508 aa24.26■■□□□ 1.47
VPS28-207ENST00000526977 RBM19Q9Y4C8 960 aaKnown RBP24.26■■□□□ 1.47
VPS28-207ENST00000526977 SPATA31A5Q5VU36 1347 aa24.26■■□□□ 1.47
VPS28-207ENST00000526977 SPATA31A7Q8IWB4 1347 aa24.26■■□□□ 1.47
VPS28-207ENST00000526977 TEFQ10587 303 aa24.25■■□□□ 1.47
VPS28-207ENST00000526977 BCL9LQ86UU0 1499 aa24.25■■□□□ 1.47
VPS28-207ENST00000526977 DCAF5Q96JK2 942 aa24.24■■□□□ 1.47
VPS28-207ENST00000526977 DISP2A7MBM2 1401 aa24.24■■□□□ 1.47
VPS28-207ENST00000526977 PDE3AQ14432 1141 aa24.23■■□□□ 1.47
VPS28-207ENST00000526977 VPS72Q15906 364 aa24.23■■□□□ 1.47
VPS28-207ENST00000526977 TSPYL4Q9UJ04 414 aa24.23■■□□□ 1.47
VPS28-207ENST00000526977 USP21Q9UK80 565 aa24.23■■□□□ 1.47
VPS28-207ENST00000526977 LRRC37A3O60309 1634 aa24.23■■□□□ 1.47
VPS28-207ENST00000526977 CCDC9Q9Y3X0 531 aaKnown RBP24.23■■□□□ 1.47
VPS28-207ENST00000526977 BARGINQ6ZT62 677 aa24.22■■□□□ 1.47
VPS28-207ENST00000526977 ZNF428Q96B54 188 aa24.21■■□□□ 1.47
VPS28-207ENST00000526977 EXOC5O00471 708 aa24.2■■□□□ 1.47
VPS28-207ENST00000526977 NKX1-1Q15270 411 aaPredicted RBP24.2■■□□□ 1.47
VPS28-207ENST00000526977 MIS18AQ9NYP9 233 aa24.2■■□□□ 1.46
VPS28-207ENST00000526977 ADAMTS7Q9UKP4 1686 aa24.19■■□□□ 1.46
VPS28-207ENST00000526977 DDX54Q8TDD1 881 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms