RNA–Protein interactions for RNA: ENST00000526468.1

CAPN1-204, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 690 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-204ENST00000526468 PUS7Q96PZ0 661 aaKnown RBP16.49■□□□□ 0.23
CAPN1-204ENST00000526468 TESK2Q96S53 571 aa16.49■□□□□ 0.23
CAPN1-204ENST00000526468 USP47Q96K76 1375 aa16.49■□□□□ 0.23
CAPN1-204ENST00000526468 UBR3Q6ZT12 1888 aa16.48■□□□□ 0.23
CAPN1-204ENST00000526468 HOXC9P31274 260 aa16.48■□□□□ 0.23
CAPN1-204ENST00000526468 AMPHP49418 695 aa16.48■□□□□ 0.23
CAPN1-204ENST00000526468 SYTL4Q96C24 671 aaPredicted RBP16.48■□□□□ 0.23
CAPN1-204ENST00000526468 SGIP1Q9BQI5 828 aa16.47■□□□□ 0.23
CAPN1-204ENST00000526468 NSD2O96028 1365 aa16.47■□□□□ 0.23
CAPN1-204ENST00000526468 MAP3K5Q99683 1374 aa16.47■□□□□ 0.23
CAPN1-204ENST00000526468 ARXQ96QS3 562 aa16.46■□□□□ 0.23
CAPN1-204ENST00000526468 SYT17Q9BSW7 474 aa16.46■□□□□ 0.23
CAPN1-204ENST00000526468 LRRC4BQ9NT99 713 aa16.46■□□□□ 0.23
CAPN1-204ENST00000526468 SLC27A3Q5K4L6 730 aa16.45■□□□□ 0.22
CAPN1-204ENST00000526468 KLHL34Q8N239 644 aa16.45■□□□□ 0.22
CAPN1-204ENST00000526468 C4BP0C0L5 1744 aa16.45■□□□□ 0.22
CAPN1-204ENST00000526468 FBLN1P23142 703 aa16.43■□□□□ 0.22
CAPN1-204ENST00000526468 RRS1Q15050 365 aaKnown RBP16.43■□□□□ 0.22
CAPN1-204ENST00000526468 PNPLA7Q6ZV29 1317 aa16.43■□□□□ 0.22
CAPN1-204ENST00000526468 GOLGB1Q14789 3259 aaKnown RBP16.42■□□□□ 0.22
CAPN1-204ENST00000526468 USHBP1Q8N6Y0 703 aa16.42■□□□□ 0.22
CAPN1-204ENST00000526468 AKT1S1Q96B36 256 aa16.42■□□□□ 0.22
CAPN1-204ENST00000526468 FLT4P35916 1363 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 VIRMAQ69YN4 1812 aaKnown RBP16.41■□□□□ 0.22
CAPN1-204ENST00000526468 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 POLD1P28340 1107 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 PRIM1P49642 420 aaKnown RBP16.41■□□□□ 0.22
CAPN1-204ENST00000526468 KCNQ4P56696 695 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 TMF1P82094 1093 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 ZCRB1Q8TBF4 217 aaKnown RBP16.41■□□□□ 0.22
CAPN1-204ENST00000526468 GGNBP2Q9H3C7 697 aa16.41■□□□□ 0.22
CAPN1-204ENST00000526468 NSD3Q9BZ95 1437 aa16.4■□□□□ 0.22
CAPN1-204ENST00000526468 TFCP2L1Q9NZI6 479 aa16.4■□□□□ 0.22
CAPN1-204ENST00000526468 CCNL1Q9UK58 526 aaPredicted RBP16.4■□□□□ 0.22
CAPN1-204ENST00000526468 TRIM26Q12899 539 aaPredicted RBP16.39■□□□□ 0.21
CAPN1-204ENST00000526468 ZNF784Q8NCA9 323 aaPredicted RBP16.39■□□□□ 0.21
CAPN1-204ENST00000526468 RAPGEF4Q8WZA2 1011 aa16.39■□□□□ 0.21
CAPN1-204ENST00000526468 PCGF6Q9BYE7 350 aa16.38■□□□□ 0.21
CAPN1-204ENST00000526468 CGNL1Q0VF96 1302 aa16.38■□□□□ 0.21
CAPN1-204ENST00000526468 PCDH11XQ9BZA7 1347 aa16.38■□□□□ 0.21
CAPN1-204ENST00000526468 PCDH11YQ9BZA8 1340 aa16.38■□□□□ 0.21
CAPN1-204ENST00000526468 INSRP06213 1382 aa16.38■□□□□ 0.21
CAPN1-204ENST00000526468 NBPF6Q5VWK0 638 aa16.37■□□□□ 0.21
CAPN1-204ENST00000526468 SLC16A10Q8TF71 515 aa16.37■□□□□ 0.21
CAPN1-204ENST00000526468 NBPF4Q96M43 638 aa16.37■□□□□ 0.21
CAPN1-204ENST00000526468 KIF24Q5T7B8 1368 aa16.37■□□□□ 0.21
CAPN1-204ENST00000526468 FYB1O15117 783 aa16.36■□□□□ 0.21
CAPN1-204ENST00000526468 TATP17735 454 aaPredicted RBP16.36■□□□□ 0.21
CAPN1-204ENST00000526468 GPR162Q16538 588 aa16.36■□□□□ 0.21
CAPN1-204ENST00000526468 MSH5O43196 834 aa16.35■□□□□ 0.21
CAPN1-204ENST00000526468 COL5A3P25940 1745 aaPredicted RBP16.35■□□□□ 0.21
CAPN1-204ENST00000526468 PALLDQ8WX93 1383 aa16.35■□□□□ 0.21
CAPN1-204ENST00000526468 CDCA8Q53HL2 280 aa16.34■□□□□ 0.21
CAPN1-204ENST00000526468 HSP90AB2PQ58FF8 381 aa16.33■□□□□ 0.2
CAPN1-204ENST00000526468 NCAPD2Q15021 1401 aa16.33■□□□□ 0.2
CAPN1-204ENST00000526468 C4AP0C0L4 1744 aa16.33■□□□□ 0.2
CAPN1-204ENST00000526468 MSL1Q68DK7 614 aa16.32■□□□□ 0.2
CAPN1-204ENST00000526468 NLGN2Q8NFZ4 835 aa16.32■□□□□ 0.2
CAPN1-204ENST00000526468 KIF13BQ9NQT8 1826 aa16.32■□□□□ 0.2
CAPN1-204ENST00000526468 EMILIN1Q9Y6C2 1016 aa16.3■□□□□ 0.2
CAPN1-204ENST00000526468 N4BP2Q86UW6 1770 aaPredicted RBP16.3■□□□□ 0.2
CAPN1-204ENST00000526468 ZNF831Q5JPB2 1677 aa16.3■□□□□ 0.2
CAPN1-204ENST00000526468 MPRIPQ6WCQ1 1025 aa16.29■□□□□ 0.2
CAPN1-204ENST00000526468 COL23A1Q86Y22 540 aaPredicted RBP16.29■□□□□ 0.2
CAPN1-204ENST00000526468 BRCA1P38398 1863 aaKnown RBP16.29■□□□□ 0.2
CAPN1-204ENST00000526468 KIAA1551Q9HCM1 1747 aa16.28■□□□□ 0.2
CAPN1-204ENST00000526468 PPM1GO15355 546 aaPredicted RBP16.28■□□□□ 0.2
CAPN1-204ENST00000526468 SENP3-EIF4A1A0A087X0R7 540 aa16.27■□□□□ 0.2
CAPN1-204ENST00000526468 CYP27B1O15528 508 aa16.27■□□□□ 0.2
CAPN1-204ENST00000526468 SCN11AQ9UI33 1791 aa16.27■□□□□ 0.2
CAPN1-204ENST00000526468 MYH14Q7Z406 1995 aaKnown RBP16.26■□□□□ 0.19
CAPN1-204ENST00000526468 AK7Q96M32 723 aa16.26■□□□□ 0.19
CAPN1-204ENST00000526468 CARD14Q9BXL6 1004 aa16.25■□□□□ 0.19
CAPN1-204ENST00000526468 GIGYF1O75420 1035 aaPredicted RBP16.24■□□□□ 0.19
CAPN1-204ENST00000526468 PHF14O94880 888 aa16.24■□□□□ 0.19
CAPN1-204ENST00000526468 YBX3P16989 372 aaKnown RBP eCLIP16.24■□□□□ 0.193e-6■□□□□ 8.2
CAPN1-204ENST00000526468 SMARCC1Q92922 1105 aaPredicted RBP16.24■□□□□ 0.19
CAPN1-204ENST00000526468 POLR3GLQ9BT43 218 aa16.24■□□□□ 0.19
CAPN1-204ENST00000526468 FLAD1Q8NFF5 587 aa16.23■□□□□ 0.19
CAPN1-204ENST00000526468 CICQ96RK0 1608 aaPredicted RBP16.23■□□□□ 0.19
CAPN1-204ENST00000526468 TJP1Q07157 1748 aa16.22■□□□□ 0.19
CAPN1-204ENST00000526468 ARFGEF1Q9Y6D6 1849 aa16.22■□□□□ 0.19
CAPN1-204ENST00000526468 ATP10DQ9P241 1426 aa16.22■□□□□ 0.19
CAPN1-204ENST00000526468 HMGB2P26583 209 aaKnown RBP16.22■□□□□ 0.19
CAPN1-204ENST00000526468 C1QTNF8P60827 252 aa16.22■□□□□ 0.19
CAPN1-204ENST00000526468 SPG7Q9UQ90 795 aa16.22■□□□□ 0.19
CAPN1-204ENST00000526468 GRIN3BO60391 1043 aa16.21■□□□□ 0.19
CAPN1-204ENST00000526468 WASHC2AQ641Q2 1341 aa16.2■□□□□ 0.18
CAPN1-204ENST00000526468 PIGBQ92521 554 aa16.2■□□□□ 0.18
CAPN1-204ENST00000526468 TMOD3Q9NYL9 352 aa16.2■□□□□ 0.18
CAPN1-204ENST00000526468 AMIGO3Q86WK7 504 aa16.19■□□□□ 0.18
CAPN1-204ENST00000526468 EYA1Q99502 592 aa16.19■□□□□ 0.18
CAPN1-204ENST00000526468 KDRP35968 1356 aa16.18■□□□□ 0.18
CAPN1-204ENST00000526468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.18■□□□□ 0.18
CAPN1-204ENST00000526468 TNNT2P45379 298 aaPredicted RBP16.18■□□□□ 0.18
CAPN1-204ENST00000526468 LINC00116Q8NCU8 138 aa16.18■□□□□ 0.18
CAPN1-204ENST00000526468 CD2APQ9Y5K6 639 aa16.18■□□□□ 0.18
CAPN1-204ENST00000526468 PLEKHG2Q9H7P9 1386 aa16.17■□□□□ 0.18
CAPN1-204ENST00000526468 LOC102724428A0A0B4J2F2 783 aa16.17■□□□□ 0.18
CAPN1-204ENST00000526468 SSFA2P28290 1259 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms