RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 PROSER2Q86WR7 435 aaPredicted RBP20.24■□□□□ 0.83
USH1C-204ENST00000526313 C14orf37Q86TY3 774 aa20.23■□□□□ 0.83
USH1C-204ENST00000526313 CHMP4BQ9H444 224 aaKnown RBP20.23■□□□□ 0.83
USH1C-204ENST00000526313 C19orf44Q9H6X5 657 aa20.23■□□□□ 0.83
USH1C-204ENST00000526313 NOP58Q9Y2X3 529 aaKnown RBP20.23■□□□□ 0.83
USH1C-204ENST00000526313 LRRC37A3O60309 1634 aa20.22■□□□□ 0.83
USH1C-204ENST00000526313 MST1RQ04912 1400 aa20.22■□□□□ 0.83
USH1C-204ENST00000526313 SLIT3O75094 1523 aa20.22■□□□□ 0.83
USH1C-204ENST00000526313 SMC5Q8IY18 1101 aa20.22■□□□□ 0.83
USH1C-204ENST00000526313 API5Q9BZZ5 524 aaKnown RBP20.22■□□□□ 0.83
USH1C-204ENST00000526313 RTF1Q92541 710 aaKnown RBP20.21■□□□□ 0.83
USH1C-204ENST00000526313 TRPM3Q9HCF6 1732 aaPredicted RBP20.21■□□□□ 0.83
USH1C-204ENST00000526313 C1orf167Q5SNV9 1468 aa20.21■□□□□ 0.83
USH1C-204ENST00000526313 KIF1AQ12756 1690 aa20.21■□□□□ 0.83
USH1C-204ENST00000526313 VIRMAQ69YN4 1812 aaKnown RBP20.2■□□□□ 0.82
USH1C-204ENST00000526313 NCOA3Q9Y6Q9 1424 aa20.2■□□□□ 0.82
USH1C-204ENST00000526313 GNAT3A8MTJ3 354 aa20.18■□□□□ 0.82
USH1C-204ENST00000526313 KRT24Q2M2I5 525 aa20.18■□□□□ 0.82
USH1C-204ENST00000526313 USP19O94966 1318 aa20.18■□□□□ 0.82
USH1C-204ENST00000526313 NPM2Q86SE8 214 aaKnown RBP20.18■□□□□ 0.82
USH1C-204ENST00000526313 MSH6P52701 1360 aa20.17■□□□□ 0.82
USH1C-204ENST00000526313 ARHGEF25Q86VW2 580 aa20.17■□□□□ 0.82
USH1C-204ENST00000526313 BABAM1Q9NWV8 329 aa20.17■□□□□ 0.82
USH1C-204ENST00000526313 RGS12O14924 1447 aa20.16■□□□□ 0.82
USH1C-204ENST00000526313 DCCP43146 1447 aa20.16■□□□□ 0.82
USH1C-204ENST00000526313 GCP02774 474 aa20.16■□□□□ 0.82
USH1C-204ENST00000526313 LTV1Q96GA3 475 aaPredicted RBP20.16■□□□□ 0.82
USH1C-204ENST00000526313 ZBTB47Q9UFB7 747 aaPredicted RBP20.16■□□□□ 0.82
USH1C-204ENST00000526313 STRCP1A6NGW2 1772 aa20.16■□□□□ 0.82
USH1C-204ENST00000526313 MAP3K5Q99683 1374 aa20.16■□□□□ 0.82
USH1C-204ENST00000526313 INTS3Q68E01 1043 aaKnown RBP20.15■□□□□ 0.82
USH1C-204ENST00000526313 ERICH6Q7L0X2 663 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 NCAPD2Q15021 1401 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 NBPF6Q5VWK0 638 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 KRT28Q7Z3Y7 464 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 NBPF4Q96M43 638 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 TSPYL4Q9UJ04 414 aa20.15■□□□□ 0.82
USH1C-204ENST00000526313 PTPRCP08575 1304 aa20.14■□□□□ 0.82
USH1C-204ENST00000526313 IL17REQ8NFR9 667 aa20.14■□□□□ 0.81
USH1C-204ENST00000526313 MIS18AQ9NYP9 233 aa20.14■□□□□ 0.81
USH1C-204ENST00000526313 TMEM94Q12767 1356 aa20.13■□□□□ 0.81
USH1C-204ENST00000526313 SOS1Q07889 1333 aaPredicted RBP20.12■□□□□ 0.81
USH1C-204ENST00000526313 ALS2Q96Q42 1657 aa20.12■□□□□ 0.81
USH1C-204ENST00000526313 XPCQ01831 940 aaPredicted RBP20.11■□□□□ 0.81
USH1C-204ENST00000526313 DDRGK1Q96HY6 314 aa20.11■□□□□ 0.81
USH1C-204ENST00000526313 CEMIPQ8WUJ3 1361 aa20.11■□□□□ 0.81
USH1C-204ENST00000526313 NUCB1Q02818 461 aa20.11■□□□□ 0.81
USH1C-204ENST00000526313 USHBP1Q8N6Y0 703 aa20.11■□□□□ 0.81
USH1C-204ENST00000526313 TAF7Q15545 349 aaPredicted RBP20.09■□□□□ 0.81
USH1C-204ENST00000526313 RGPD2P0DJD1 1756 aa20.09■□□□□ 0.81
USH1C-204ENST00000526313 ATF3P18847 181 aa20.09■□□□□ 0.81
USH1C-204ENST00000526313 SIRT2Q8IXJ6 389 aa20.09■□□□□ 0.81
USH1C-204ENST00000526313 CAMTA1Q9Y6Y1 1673 aa20.09■□□□□ 0.81
USH1C-204ENST00000526313 MED1Q15648 1581 aaPredicted RBP20.08■□□□□ 0.81
USH1C-204ENST00000526313 SLC4A2P04920 1241 aa20.08■□□□□ 0.81
USH1C-204ENST00000526313 GCC1Q96CN9 775 aa20.08■□□□□ 0.81
USH1C-204ENST00000526313 LMO7Q8WWI1 1683 aa20.06■□□□□ 0.8
USH1C-204ENST00000526313 SEC24BO95487 1268 aa20.06■□□□□ 0.8
USH1C-204ENST00000526313 LRRC59Q96AG4 307 aaKnown RBP20.05■□□□□ 0.8
USH1C-204ENST00000526313 C1orf115Q9H7X2 142 aa20.05■□□□□ 0.8
USH1C-204ENST00000526313 CHD1LQ86WJ1 897 aa20.05■□□□□ 0.8
USH1C-204ENST00000526313 CACNA1FO60840 1977 aa20.04■□□□□ 0.8
USH1C-204ENST00000526313 CADPS2Q86UW7 1296 aa20.04■□□□□ 0.8
USH1C-204ENST00000526313 AMOTQ4VCS5 1084 aa20.03■□□□□ 0.8
USH1C-204ENST00000526313 G2E3Q7L622 706 aa20.03■□□□□ 0.8
USH1C-204ENST00000526313 ANKRD24Q8TF21 1146 aa20.03■□□□□ 0.8
USH1C-204ENST00000526313 AXIN2Q9Y2T1 843 aa20.03■□□□□ 0.8
USH1C-204ENST00000526313 PLEKHO1Q53GL0 409 aaPredicted RBP20.03■□□□□ 0.8
USH1C-204ENST00000526313 CCDC30Q5VVM6 783 aa20.03■□□□□ 0.8
USH1C-204ENST00000526313 FAM208AQ9UK61 1670 aaKnown RBP20.02■□□□□ 0.8
USH1C-204ENST00000526313 AKAP4Q5JQC9 854 aa20.02■□□□□ 0.8
USH1C-204ENST00000526313 LMOD2Q6P5Q4 547 aa20.02■□□□□ 0.8
USH1C-204ENST00000526313 LMTK3Q96Q04 1460 aa20.02■□□□□ 0.8
USH1C-204ENST00000526313 ATP10DQ9P241 1426 aa20.02■□□□□ 0.8
USH1C-204ENST00000526313 ZBTB7CA1YPR0 619 aa20.02■□□□□ 0.79
USH1C-204ENST00000526313 HSPA2P54652 639 aa20.02■□□□□ 0.79
USH1C-204ENST00000526313 OVOS2A0A0G2JMS6 1433 aa20.01■□□□□ 0.79
USH1C-204ENST00000526313 RPAP2Q8IXW5 612 aaPredicted RBP20■□□□□ 0.79
USH1C-204ENST00000526313 ANKRD44Q8N8A2 993 aa20■□□□□ 0.79
USH1C-204ENST00000526313 STK31Q9BXU1 1019 aa20■□□□□ 0.79
USH1C-204ENST00000526313 LGR6Q9HBX8 967 aa20■□□□□ 0.79
USH1C-204ENST00000526313 KDM3BQ7LBC6 1761 aa20■□□□□ 0.79
USH1C-204ENST00000526313 DCTPP1Q9H773 170 aa20■□□□□ 0.79
USH1C-204ENST00000526313 XIRP1Q702N8 1843 aaKnown RBP19.99■□□□□ 0.79
USH1C-204ENST00000526313 NPHP3Q7Z494 1330 aa19.99■□□□□ 0.79
USH1C-204ENST00000526313 CCT4P50991 539 aaKnown RBP19.99■□□□□ 0.79
USH1C-204ENST00000526313 LNPKQ9C0E8 428 aa19.99■□□□□ 0.79
USH1C-204ENST00000526313 RGPD5Q99666 1765 aa19.98■□□□□ 0.79
USH1C-204ENST00000526313 ERBB3P21860 1342 aa19.98■□□□□ 0.79
USH1C-204ENST00000526313 COL18A1P39060 1754 aa19.98■□□□□ 0.79
USH1C-204ENST00000526313 ZNF530Q6P9A1 599 aaPredicted RBP19.98■□□□□ 0.79
USH1C-204ENST00000526313 PXDNQ92626 1479 aa19.98■□□□□ 0.79
USH1C-204ENST00000526313 HOXB7P09629 217 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 ANKRD45Q5TZF3 282 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 STRCQ7RTU9 1775 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 EIF4A1P60842 406 aaKnown RBP19.97■□□□□ 0.79
USH1C-204ENST00000526313 FLIIQ13045 1269 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 CEP85Q6P2H3 762 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 ABCC6O95255 1503 aa19.97■□□□□ 0.79
USH1C-204ENST00000526313 TNS3Q68CZ2 1445 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms