RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 LY75O60449 1722 aa14.01□□□□□ -0.17
VPS28-204ENST00000526054 TUBGCP6Q96RT7 1819 aa14□□□□□ -0.17
VPS28-204ENST00000526054 FBLN1P23142 703 aa13.99□□□□□ -0.17
VPS28-204ENST00000526054 RRS1Q15050 365 aaKnown RBP13.99□□□□□ -0.17
VPS28-204ENST00000526054 ZNF827Q17R98 1081 aa13.99□□□□□ -0.17
VPS28-204ENST00000526054 SYTL4Q96C24 671 aaPredicted RBP13.99□□□□□ -0.17
VPS28-204ENST00000526054 POLR3GLQ9BT43 218 aa13.99□□□□□ -0.17
VPS28-204ENST00000526054 GGNBP2Q9H3C7 697 aa13.99□□□□□ -0.17
VPS28-204ENST00000526054 LRRC4BQ9NT99 713 aa13.98□□□□□ -0.17
VPS28-204ENST00000526054 UTRNP46939 3433 aa13.98□□□□□ -0.17
VPS28-204ENST00000526054 FYB1O15117 783 aa13.97□□□□□ -0.17
VPS28-204ENST00000526054 SLC27A3Q5K4L6 730 aa13.97□□□□□ -0.17
VPS28-204ENST00000526054 FHDC1Q9C0D6 1143 aaPredicted RBP13.97□□□□□ -0.17
VPS28-204ENST00000526054 NSD2O96028 1365 aa13.96□□□□□ -0.17
VPS28-204ENST00000526054 ZCRB1Q8TBF4 217 aaKnown RBP13.96□□□□□ -0.17
VPS28-204ENST00000526054 SGIP1Q9BQI5 828 aa13.96□□□□□ -0.17
VPS28-204ENST00000526054 FLT4P35916 1363 aa13.96□□□□□ -0.18
VPS28-204ENST00000526054 COL24A1Q17RW2 1714 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 ANKRD26Q9UPS8 1709 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 PRIM1P49642 420 aaKnown RBP13.95□□□□□ -0.18
VPS28-204ENST00000526054 NBPF6Q5VWK0 638 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 USHBP1Q8N6Y0 703 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 NBPF4Q96M43 638 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 SYT17Q9BSW7 474 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 NSD3Q9BZ95 1437 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 INSRP06213 1382 aa13.95□□□□□ -0.18
VPS28-204ENST00000526054 CGNL1Q0VF96 1302 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 RAPGEF4Q8WZA2 1011 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 AKT1S1Q96B36 256 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 ARXQ96QS3 562 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 C5P01031 1676 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 KIF24Q5T7B8 1368 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 MAP3K5Q99683 1374 aa13.94□□□□□ -0.18
VPS28-204ENST00000526054 KIF7Q2M1P5 1343 aa13.93□□□□□ -0.18
VPS28-204ENST00000526054 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
VPS28-204ENST00000526054 CHD4Q14839 1912 aa13.93□□□□□ -0.18
VPS28-204ENST00000526054 PNPLA7Q6ZV29 1317 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 PCDH11XQ9BZA7 1347 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 PCDH11YQ9BZA8 1340 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 KCNQ4P56696 695 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 TFCP2L1Q9NZI6 479 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 TOGARAM1Q9Y4F4 1720 aa13.92□□□□□ -0.18
VPS28-204ENST00000526054 TATP17735 454 aaPredicted RBP13.91□□□□□ -0.18
VPS28-204ENST00000526054 HSP90AB2PQ58FF8 381 aa13.91□□□□□ -0.18
VPS28-204ENST00000526054 SLC16A10Q8TF71 515 aa13.91□□□□□ -0.18
VPS28-204ENST00000526054 CCNL1Q9UK58 526 aaPredicted RBP13.91□□□□□ -0.18
VPS28-204ENST00000526054 ITGB4P16144 1822 aa13.9□□□□□ -0.18
VPS28-204ENST00000526054 TAF1LQ8IZX4 1826 aa13.9□□□□□ -0.18
VPS28-204ENST00000526054 POLD1P28340 1107 aa13.9□□□□□ -0.18
VPS28-204ENST00000526054 KLHL34Q8N239 644 aa13.89□□□□□ -0.19
VPS28-204ENST00000526054 CARD14Q9BXL6 1004 aa13.89□□□□□ -0.19
VPS28-204ENST00000526054 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
VPS28-204ENST00000526054 MAP2P11137 1827 aaKnown RBP13.88□□□□□ -0.19
VPS28-204ENST00000526054 EMILIN1Q9Y6C2 1016 aa13.88□□□□□ -0.19
VPS28-204ENST00000526054 NCAPD2Q15021 1401 aa13.88□□□□□ -0.19
VPS28-204ENST00000526054 PALLDQ8WX93 1383 aa13.87□□□□□ -0.19
VPS28-204ENST00000526054 PANK3Q9H999 370 aa13.87□□□□□ -0.19
VPS28-204ENST00000526054 PPM1GO15355 546 aaPredicted RBP13.86□□□□□ -0.19
VPS28-204ENST00000526054 C4BP0C0L5 1744 aa13.86□□□□□ -0.19
VPS28-204ENST00000526054 CYP27B1O15528 508 aa13.85□□□□□ -0.19
VPS28-204ENST00000526054 MSH5O43196 834 aa13.85□□□□□ -0.19
VPS28-204ENST00000526054 GOLGB1Q14789 3259 aaKnown RBP13.84□□□□□ -0.19
VPS28-204ENST00000526054 GPR162Q16538 588 aa13.84□□□□□ -0.19
VPS28-204ENST00000526054 MPRIPQ6WCQ1 1025 aa13.84□□□□□ -0.19
VPS28-204ENST00000526054 ZNF784Q8NCA9 323 aaPredicted RBP13.84□□□□□ -0.19
VPS28-204ENST00000526054 KNSTRNQ9Y448 316 aa13.83□□□□□ -0.2
VPS28-204ENST00000526054 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
VPS28-204ENST00000526054 HMGB2P26583 209 aaKnown RBP13.82□□□□□ -0.2
VPS28-204ENST00000526054 COL23A1Q86Y22 540 aaPredicted RBP13.82□□□□□ -0.2
VPS28-204ENST00000526054 PELP1Q8IZL8 1130 aaKnown RBP13.82□□□□□ -0.2
VPS28-204ENST00000526054 SPG7Q9UQ90 795 aa13.82□□□□□ -0.2
VPS28-204ENST00000526054 MSL1Q68DK7 614 aa13.81□□□□□ -0.2
VPS28-204ENST00000526054 NLGN2Q8NFZ4 835 aa13.81□□□□□ -0.2
VPS28-204ENST00000526054 SMARCC1Q92922 1105 aaPredicted RBP13.81□□□□□ -0.2
VPS28-204ENST00000526054 FLAD1Q8NFF5 587 aa13.8□□□□□ -0.2
VPS28-204ENST00000526054 AK7Q96M32 723 aa13.8□□□□□ -0.2
VPS28-204ENST00000526054 EYA1Q99502 592 aa13.8□□□□□ -0.2
VPS28-204ENST00000526054 POLKQ9UBT6 870 aa13.8□□□□□ -0.2
VPS28-204ENST00000526054 TNNT2P45379 298 aaPredicted RBP13.79□□□□□ -0.2
VPS28-204ENST00000526054 NKX1-1Q15270 411 aaPredicted RBP13.79□□□□□ -0.2
VPS28-204ENST00000526054 PIGBQ92521 554 aa13.78□□□□□ -0.2
VPS28-204ENST00000526054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS28-204ENST00000526054 PLEKHG2Q9H7P9 1386 aa13.78□□□□□ -0.2
VPS28-204ENST00000526054 EIF4A2Q14240 407 aaKnown RBP13.77□□□□□ -0.21
VPS28-204ENST00000526054 TMOD3Q9NYL9 352 aa13.77□□□□□ -0.21
VPS28-204ENST00000526054 PHF14O94880 888 aa13.76□□□□□ -0.21
VPS28-204ENST00000526054 PHKG2P15735 406 aa13.76□□□□□ -0.21
VPS28-204ENST00000526054 IFNL2Q8IZJ0 200 aa13.76□□□□□ -0.21
VPS28-204ENST00000526054 NPC1L1Q9UHC9 1359 aa13.75□□□□□ -0.21
VPS28-204ENST00000526054 LOC102724428A0A0B4J2F2 783 aa13.75□□□□□ -0.21
VPS28-204ENST00000526054 PER1O15534 1290 aaPredicted RBP13.75□□□□□ -0.21
VPS28-204ENST00000526054 SIK1P57059 783 aa13.75□□□□□ -0.21
VPS28-204ENST00000526054 AMER1Q5JTC6 1135 aaPredicted RBP13.75□□□□□ -0.21
VPS28-204ENST00000526054 MORC1Q86VD1 984 aa13.75□□□□□ -0.21
VPS28-204ENST00000526054 IGSF1Q8N6C5 1336 aa13.74□□□□□ -0.21
VPS28-204ENST00000526054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.74□□□□□ -0.21
VPS28-204ENST00000526054 YBX3P16989 372 aaKnown RBP eCLIP13.74□□□□□ -0.211e-7■□□□□ 9.8
VPS28-204ENST00000526054 AMIGO3Q86WK7 504 aa13.74□□□□□ -0.21
VPS28-204ENST00000526054 LINC00116Q8NCU8 138 aa13.74□□□□□ -0.21
VPS28-204ENST00000526054 ZNF831Q5JPB2 1677 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms