RNA–Protein interactions for RNA: ENST00000525990.1

SSBP3-210, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-210ENST00000525990 HSP90AB2PQ58FF8 381 aa16.76■□□□□ 0.27
SSBP3-210ENST00000525990 LY75O60449 1722 aa16.75■□□□□ 0.27
SSBP3-210ENST00000525990 TOGARAM1Q9Y4F4 1720 aa16.75■□□□□ 0.27
SSBP3-210ENST00000525990 FLT4P35916 1363 aa16.75■□□□□ 0.27
SSBP3-210ENST00000525990 PKD1L3Q7Z443 1732 aa16.74■□□□□ 0.27
SSBP3-210ENST00000525990 EIF4G2P78344 907 aaKnown RBP eCLIP16.74■□□□□ 0.278e-7■■■■□ 25.5
SSBP3-210ENST00000525990 INSRP06213 1382 aa16.74■□□□□ 0.27
SSBP3-210ENST00000525990 ITGB4P16144 1822 aa16.73■□□□□ 0.27
SSBP3-210ENST00000525990 SMG6Q86US8 1419 aaKnown RBP16.72■□□□□ 0.27
SSBP3-210ENST00000525990 NSD2O96028 1365 aa16.71■□□□□ 0.27
SSBP3-210ENST00000525990 PPM1GO15355 546 aaPredicted RBP16.7■□□□□ 0.26
SSBP3-210ENST00000525990 ZCRB1Q8TBF4 217 aaKnown RBP16.7■□□□□ 0.26
SSBP3-210ENST00000525990 CGNL1Q0VF96 1302 aa16.7■□□□□ 0.26
SSBP3-210ENST00000525990 KIF24Q5T7B8 1368 aa16.69■□□□□ 0.26
SSBP3-210ENST00000525990 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
SSBP3-210ENST00000525990 KCNQ4P56696 695 aa16.69■□□□□ 0.26
SSBP3-210ENST00000525990 LRRC4BQ9NT99 713 aa16.69■□□□□ 0.26
SSBP3-210ENST00000525990 QSER1Q2KHR3 1735 aa16.69■□□□□ 0.26
SSBP3-210ENST00000525990 PRIM1P49642 420 aaKnown RBP16.68■□□□□ 0.26
SSBP3-210ENST00000525990 SYTL4Q96C24 671 aaPredicted RBP16.68■□□□□ 0.26
SSBP3-210ENST00000525990 NCAPD2Q15021 1401 aa16.68■□□□□ 0.26
SSBP3-210ENST00000525990 ZBTB7AO95365 584 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 SLC15A2Q16348 729 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 ZNF827Q17R98 1081 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 PANK3Q9H999 370 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 SPON1Q9HCB6 807 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 STK32BQ9NY57 414 aa16.67■□□□□ 0.26
SSBP3-210ENST00000525990 TAF1LQ8IZX4 1826 aa16.66■□□□□ 0.26
SSBP3-210ENST00000525990 RAPGEF4Q8WZA2 1011 aa16.66■□□□□ 0.26
SSBP3-210ENST00000525990 POLKQ9UBT6 870 aa16.66■□□□□ 0.26
SSBP3-210ENST00000525990 C5P01031 1676 aa16.65■□□□□ 0.26
SSBP3-210ENST00000525990 TATP17735 454 aaPredicted RBP16.65■□□□□ 0.26
SSBP3-210ENST00000525990 ATF5Q9Y2D1 282 aaPredicted RBP16.64■□□□□ 0.25
SSBP3-210ENST00000525990 WASHC2AQ641Q2 1341 aa16.64■□□□□ 0.25
SSBP3-210ENST00000525990 CYP27B1O15528 508 aa16.63■□□□□ 0.25
SSBP3-210ENST00000525990 PTGER2P43116 358 aa16.63■□□□□ 0.25
SSBP3-210ENST00000525990 EYA1Q99502 592 aa16.62■□□□□ 0.25
SSBP3-210ENST00000525990 PPP1R1BQ9UD71 204 aaPredicted RBP16.62■□□□□ 0.25
SSBP3-210ENST00000525990 COL24A1Q17RW2 1714 aa16.62■□□□□ 0.25
SSBP3-210ENST00000525990 EIF4A2Q14240 407 aaKnown RBP16.61■□□□□ 0.25
SSBP3-210ENST00000525990 KIF7Q2M1P5 1343 aa16.61■□□□□ 0.25
SSBP3-210ENST00000525990 PCDH11XQ9BZA7 1347 aa16.61■□□□□ 0.25
SSBP3-210ENST00000525990 PCDH11YQ9BZA8 1340 aa16.61■□□□□ 0.25
SSBP3-210ENST00000525990 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
SSBP3-210ENST00000525990 PNPLA7Q6ZV29 1317 aa16.57■□□□□ 0.24
SSBP3-210ENST00000525990 SLC27A3Q5K4L6 730 aa16.57■□□□□ 0.24
SSBP3-210ENST00000525990 SGIP1Q9BQI5 828 aa16.57■□□□□ 0.24
SSBP3-210ENST00000525990 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
SSBP3-210ENST00000525990 MPRIPQ6WCQ1 1025 aa16.56■□□□□ 0.24
SSBP3-210ENST00000525990 MTFR1LQ9H019 292 aa16.56■□□□□ 0.24
SSBP3-210ENST00000525990 CCNL1Q9UK58 526 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-210ENST00000525990 C4BP0C0L5 1744 aa16.56■□□□□ 0.24
SSBP3-210ENST00000525990 UBR3Q6ZT12 1888 aa16.55■□□□□ 0.24
SSBP3-210ENST00000525990 MORC1Q86VD1 984 aa16.55■□□□□ 0.24
SSBP3-210ENST00000525990 PALLDQ8WX93 1383 aa16.54■□□□□ 0.24
SSBP3-210ENST00000525990 IGSF1Q8N6C5 1336 aa16.54■□□□□ 0.24
SSBP3-210ENST00000525990 AMER1Q5JTC6 1135 aaPredicted RBP16.53■□□□□ 0.24
SSBP3-210ENST00000525990 KNSTRNQ9Y448 316 aa16.53■□□□□ 0.24
SSBP3-210ENST00000525990 AEBP1Q8IUX7 1158 aa16.52■□□□□ 0.24
SSBP3-210ENST00000525990 PIGBQ92521 554 aa16.52■□□□□ 0.24
SSBP3-210ENST00000525990 FHDC1Q9C0D6 1143 aaPredicted RBP16.52■□□□□ 0.24
SSBP3-210ENST00000525990 TFCP2L1Q9NZI6 479 aa16.52■□□□□ 0.24
SSBP3-210ENST00000525990 SPG7Q9UQ90 795 aa16.52■□□□□ 0.24
SSBP3-210ENST00000525990 PHKG2P15735 406 aa16.51■□□□□ 0.23
SSBP3-210ENST00000525990 NKX1-1Q15270 411 aaPredicted RBP16.51■□□□□ 0.23
SSBP3-210ENST00000525990 SMIM5Q71RC9 77 aa16.5■□□□□ 0.23
SSBP3-210ENST00000525990 SCN11AQ9UI33 1791 aa16.49■□□□□ 0.23
SSBP3-210ENST00000525990 PER1O15534 1290 aaPredicted RBP16.49■□□□□ 0.23
SSBP3-210ENST00000525990 AMIGO3Q86WK7 504 aa16.49■□□□□ 0.23
SSBP3-210ENST00000525990 SYT17Q9BSW7 474 aa16.49■□□□□ 0.23
SSBP3-210ENST00000525990 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.49■□□□□ 0.236e-7■■□□□ 12.6
SSBP3-210ENST00000525990 COL5A3P25940 1745 aaPredicted RBP16.48■□□□□ 0.23
SSBP3-210ENST00000525990 KDM6AO15550 1401 aaPredicted RBP16.48■□□□□ 0.23
SSBP3-210ENST00000525990 CNGB1Q14028 1251 aaPredicted RBP16.48■□□□□ 0.23
SSBP3-210ENST00000525990 COL23A1Q86Y22 540 aaPredicted RBP16.48■□□□□ 0.23
SSBP3-210ENST00000525990 IFNL2Q8IZJ0 200 aa16.48■□□□□ 0.23
SSBP3-210ENST00000525990 ARXQ96QS3 562 aa16.48■□□□□ 0.23
SSBP3-210ENST00000525990 ASAP1Q9ULH1 1129 aa16.48■□□□□ 0.23
SSBP3-210ENST00000525990 CC2D1BQ5T0F9 858 aaKnown RBP16.47■□□□□ 0.23
SSBP3-210ENST00000525990 MSH5O43196 834 aa16.46■□□□□ 0.23
SSBP3-210ENST00000525990 MSL1Q68DK7 614 aa16.46■□□□□ 0.23
SSBP3-210ENST00000525990 TMOD3Q9NYL9 352 aa16.46■□□□□ 0.23
SSBP3-210ENST00000525990 IL13P35225 146 aa16.45■□□□□ 0.22
SSBP3-210ENST00000525990 CHD4Q14839 1912 aa16.45■□□□□ 0.22
SSBP3-210ENST00000525990 KDRP35968 1356 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 MTHFSP49914 203 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 ITPK1Q13572 414 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 SULT6B1Q6IMI4 303 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 ZNF530Q6P9A1 599 aaPredicted RBP16.44■□□□□ 0.22
SSBP3-210ENST00000525990 KLHL34Q8N239 644 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 LINC00116Q8NCU8 138 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 SLC16A10Q8TF71 515 aa16.44■□□□□ 0.22
SSBP3-210ENST00000525990 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 PLEKHG2Q9H7P9 1386 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 TJP1Q07157 1748 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 LOC102724428A0A0B4J2F2 783 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 SIK1P57059 783 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 SMARCC1Q92922 1105 aaPredicted RBP16.43■□□□□ 0.22
SSBP3-210ENST00000525990 ATG3Q9NT62 314 aa16.43■□□□□ 0.22
SSBP3-210ENST00000525990 MYH14Q7Z406 1995 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms