RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FIGNL2A6NMB9 653 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 TTLL8A6PVC2 850 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 ATP5J2-PTCD1G3V325 749 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 LCE2CQ5TA81 110 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 FOXD4L5Q5VV16 416 aaPredicted RBP8.69□□□□□ -1.02
CD44-217ENST00000525348 PLPP7Q8NBV4 271 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 UCN2Q96RP3 112 aa8.69□□□□□ -1.02
CD44-217ENST00000525348 MAN1A2O60476 641 aa8.68□□□□□ -1.02
CD44-217ENST00000525348 OXLD1Q5BKU9 147 aa8.68□□□□□ -1.02
CD44-217ENST00000525348 HDGFL1Q5TGJ6 251 aa8.68□□□□□ -1.02
CD44-217ENST00000525348 STAU1O95793 577 aaKnown RBP8.67□□□□□ -1.02
CD44-217ENST00000525348 LCE2AQ5TA79 106 aaPredicted RBP8.67□□□□□ -1.02
CD44-217ENST00000525348 RNF217Q8TC41 542 aa8.67□□□□□ -1.02
CD44-217ENST00000525348 POLMQ9NP87 494 aaPredicted RBP8.67□□□□□ -1.02
CD44-217ENST00000525348 A0A1W2PRU2 124 aa8.66□□□□□ -1.02
CD44-217ENST00000525348 NFX1Q12986 1120 aaKnown RBP8.66□□□□□ -1.02
CD44-217ENST00000525348 CYP2U1Q7Z449 544 aa8.66□□□□□ -1.02
CD44-217ENST00000525348 ARHGEF10LQ9HCE6 1279 aa8.66□□□□□ -1.02
CD44-217ENST00000525348 RAB6BQ9NRW1 208 aa8.66□□□□□ -1.02
CD44-217ENST00000525348 GTF3C3Q9Y5Q9 886 aa8.66□□□□□ -1.02
CD44-217ENST00000525348 SKIP12755 728 aa8.65□□□□□ -1.02
CD44-217ENST00000525348 VEGFBP49765 207 aa8.65□□□□□ -1.02
CD44-217ENST00000525348 GLMNQ92990 594 aa8.65□□□□□ -1.02
CD44-217ENST00000525348 MEN1O00255 615 aa8.64□□□□□ -1.03
CD44-217ENST00000525348 TERTO14746 1132 aaKnown RBP8.64□□□□□ -1.03
CD44-217ENST00000525348 MYCP01106 439 aaPredicted RBP8.64□□□□□ -1.03
CD44-217ENST00000525348 IL2RAP01589 272 aa8.64□□□□□ -1.03
CD44-217ENST00000525348 MAP7D1Q3KQU3 841 aa8.64□□□□□ -1.03
CD44-217ENST00000525348 TBC1D9Q6ZT07 1266 aa8.64□□□□□ -1.03
CD44-217ENST00000525348 USP4Q13107 963 aa8.63□□□□□ -1.03
CD44-217ENST00000525348 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.63□□□□□ -1.03
CD44-217ENST00000525348 TREML4Q6UXN2 200 aa8.63□□□□□ -1.03
CD44-217ENST00000525348 NFATC2IPQ8NCF5 419 aa8.63□□□□□ -1.03
CD44-217ENST00000525348 TRIM52Q96A61 297 aa8.63□□□□□ -1.03
CD44-217ENST00000525348 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
CD44-217ENST00000525348 RNF144AP50876 292 aaPredicted RBP8.62□□□□□ -1.03
CD44-217ENST00000525348 CLN3Q13286 438 aa8.62□□□□□ -1.03
CD44-217ENST00000525348 DEPDC4Q8N2C3 294 aa8.62□□□□□ -1.03
CD44-217ENST00000525348 HRH3Q9Y5N1 445 aa8.62□□□□□ -1.03
CD44-217ENST00000525348 USP17L5A8MUK1 530 aa8.61□□□□□ -1.03
CD44-217ENST00000525348 GNRH1P01148 92 aa8.61□□□□□ -1.03
CD44-217ENST00000525348 PTSQ03393 145 aa8.61□□□□□ -1.03
CD44-217ENST00000525348 NCOA4Q13772 614 aa8.61□□□□□ -1.03
CD44-217ENST00000525348 ESF1Q9H501 851 aaKnown RBP8.61□□□□□ -1.03
CD44-217ENST00000525348 ETNK1Q9HBU6 452 aa8.61□□□□□ -1.03
CD44-217ENST00000525348 SENP3-EIF4A1A0A087X0R7 540 aa8.6□□□□□ -1.03
CD44-217ENST00000525348 H3BM21 787 aa8.6□□□□□ -1.03
CD44-217ENST00000525348 WFS1O76024 890 aa8.6□□□□□ -1.03
CD44-217ENST00000525348 SCNN1DP51172 638 aa8.6□□□□□ -1.03
CD44-217ENST00000525348 PPFIA3O75145 1194 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 RHOQP17081 205 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 PRICKLE2Q7Z3G6 844 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 CNKSR1Q969H4 720 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 XAGE2Q96GT9 111 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 ESYT1Q9BSJ8 1104 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 GRIP2Q9C0E4 1043 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 ZNF777Q9ULD5 760 aaPredicted RBP8.59□□□□□ -1.03
CD44-217ENST00000525348 PCDHGA11Q9Y5H2 935 aa8.59□□□□□ -1.03
CD44-217ENST00000525348 ERBB4Q15303 1308 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 SLC35F4A4IF30 521 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 ATP9BO43861 1147 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 GPC1P35052 558 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 EML3Q32P44 896 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 LYSMD3Q7Z3D4 306 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 NLRP3Q96P20 1036 aa8.58□□□□□ -1.04
CD44-217ENST00000525348 FHDC1Q9C0D6 1143 aaPredicted RBP8.58□□□□□ -1.04
CD44-217ENST00000525348 USP17L3A6NCW0 530 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 USP17L4A6NCW7 530 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 CENPCQ03188 943 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 USP17L2Q6R6M4 530 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 USP17L1Q7RTZ2 530 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 PLEKHM2Q8IWE5 1019 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 NPAS3Q8IXF0 933 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 SIRT1Q96EB6 747 aa8.57□□□□□ -1.04
CD44-217ENST00000525348 TMEM229AB2RXF0 380 aa8.56□□□□□ -1.04
CD44-217ENST00000525348 GDF10P55107 478 aa8.56□□□□□ -1.04
CD44-217ENST00000525348 GTF2IP78347 998 aa8.56□□□□□ -1.04
CD44-217ENST00000525348 CCDC155Q8N6L0 562 aa8.56□□□□□ -1.04
CD44-217ENST00000525348 CALR3Q96L12 384 aaKnown RBP8.56□□□□□ -1.04
CD44-217ENST00000525348 ZMYND15Q9H091 742 aa8.56□□□□□ -1.04
CD44-217ENST00000525348 TFIP11Q9UBB9 837 aaKnown RBP8.56□□□□□ -1.04
CD44-217ENST00000525348 POU4F2Q12837 409 aa8.55□□□□□ -1.04
CD44-217ENST00000525348 SLC27A3Q5K4L6 730 aa8.55□□□□□ -1.04
CD44-217ENST00000525348 KIAA1024Q9UPX6 916 aa8.55□□□□□ -1.04
CD44-217ENST00000525348 NOD1Q9Y239 953 aa8.55□□□□□ -1.04
CD44-217ENST00000525348 MAFBQ9Y5Q3 323 aaPredicted RBP8.55□□□□□ -1.04
CD44-217ENST00000525348 PALM3A6NDB9 673 aaPredicted RBP8.54□□□□□ -1.04
CD44-217ENST00000525348 LZTS3O60299 673 aaPredicted RBP8.54□□□□□ -1.04
CD44-217ENST00000525348 INHAP05111 366 aa8.54□□□□□ -1.04
CD44-217ENST00000525348 PPP1R12CQ9BZL4 782 aa8.54□□□□□ -1.04
CD44-217ENST00000525348 SPATA31C2B4DYI2 1134 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 ZBTB7BO15156 539 aaPredicted RBP8.53□□□□□ -1.04
CD44-217ENST00000525348 VSIG8P0DPA2 414 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 CLDN10P78369 228 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 ESCO1Q5FWF5 840 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 NBPF10Q6P3W6 841 aaKnown RBP8.53□□□□□ -1.04
CD44-217ENST00000525348 NBPF15Q8N660 670 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 SLC16A10Q8TF71 515 aa8.53□□□□□ -1.04
CD44-217ENST00000525348 CUEDC1Q9NWM3 386 aaPredicted RBP8.53□□□□□ -1.04
CD44-217ENST00000525348 WASLO00401 505 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms